Wall clock time and date at job start Tue Mar 31 2020 19:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47032 * 2 1 4 4 N 1.46501 * 109.46947 * 180.02562 * 3 2 1 5 5 C 1.34807 * 126.59760 * 125.00387 * 4 3 2 6 6 C 1.36596 * 106.84292 * 179.97438 * 5 4 3 7 7 C 1.47527 * 125.76815 * 180.02562 * 6 5 4 8 8 O 1.21591 * 120.00455 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99415 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99981 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47565 * 175.98387 * 10 9 7 12 12 N 1.46506 * 109.46848 * 305.25126 * 11 10 9 13 13 C 1.36933 * 120.00106 * 300.07204 * 12 11 10 14 14 H 1.08000 * 119.99835 * 354.07925 * 13 12 11 15 15 C 1.38811 * 120.00122 * 174.07265 * 13 12 11 16 16 N 1.31621 * 119.99832 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99842 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47356 * 90.00294 * 17 15 13 19 19 H 1.48507 * 109.47127 * 209.99980 * 17 15 13 20 20 H 1.48500 * 109.47489 * 329.99895 * 17 15 13 21 21 C 1.53000 * 109.47526 * 185.25086 * 11 10 9 22 22 C 1.52994 * 109.47006 * 180.02562 * 21 11 10 23 23 C 1.52998 * 109.47375 * 59.99977 * 22 21 11 24 24 C 1.52996 * 109.47204 * 299.99645 * 23 22 21 25 25 C 1.53003 * 109.47210 * 60.00060 * 24 23 22 26 26 N 1.34395 * 108.45667 * 359.97438 * 6 5 4 27 27 N 1.28759 * 109.52638 * 0.02562 * 26 6 5 28 28 H 1.09001 * 109.47401 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47610 * 299.99890 * 1 2 3 30 30 H 1.09009 * 109.47289 * 59.99770 * 1 2 3 31 31 H 1.09004 * 109.47130 * 240.00332 * 2 1 3 32 32 H 1.08997 * 109.47127 * 119.99820 * 2 1 3 33 33 H 1.09000 * 109.46429 * 60.00266 * 3 2 1 34 34 H 1.08997 * 109.47017 * 299.99887 * 3 2 1 35 35 H 1.07999 * 126.57720 * 0.02562 * 5 4 3 36 36 H 0.97003 * 120.00440 * 0.02562 * 9 7 6 37 37 H 1.09004 * 109.46788 * 295.98701 * 10 9 7 38 38 H 1.09000 * 109.46693 * 55.97899 * 10 9 7 39 39 H 0.97005 * 119.99974 * 120.08163 * 12 11 10 40 40 H 0.97004 * 119.99420 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.46505 * 300.00014 * 21 11 10 42 42 H 1.08994 * 109.47010 * 59.99659 * 21 11 10 43 43 H 1.09000 * 109.47425 * 299.99358 * 22 21 11 44 44 H 1.09002 * 109.46659 * 179.97438 * 22 21 11 45 45 H 1.09005 * 109.47045 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.46947 * 60.00199 * 23 22 21 47 47 H 1.09000 * 109.46714 * 300.00079 * 24 23 22 48 48 H 1.09003 * 109.47236 * 180.02562 * 24 23 22 49 49 H 1.08994 * 109.47342 * 179.97438 * 25 24 23 50 50 H 1.09001 * 109.46762 * 59.99556 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3083 2.0635 -0.8874 6 6 5.5940 1.7991 -0.5095 7 6 6.8099 2.2788 -1.1935 8 8 6.7147 2.9741 -2.1865 9 7 8.0263 1.9464 -0.7177 10 6 9.2338 2.4223 -1.3973 11 6 10.4690 1.9912 -0.6041 12 7 10.3487 2.4587 0.7791 13 6 10.2362 3.7979 1.0419 14 1 10.3318 4.5153 0.2403 15 6 9.9990 4.2333 2.3384 16 7 9.8828 3.3590 3.3153 17 14 9.8447 6.0601 2.6966 18 1 8.4244 6.4725 2.5633 19 1 10.3122 6.3347 4.0792 20 1 10.6750 6.8255 1.7322 21 6 11.7212 2.5977 -1.2404 22 6 12.9563 2.1660 -0.4476 23 6 13.0646 0.6399 -0.4630 24 6 11.8125 0.0333 0.1734 25 6 10.5772 0.4650 -0.6195 26 7 5.5641 1.0289 0.5915 27 7 4.3412 0.7974 0.9216 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9954 2.6570 -1.7337 36 1 8.1023 1.3915 0.0742 37 1 9.2785 1.9961 -2.3995 38 1 9.2073 3.5098 -1.4659 39 1 10.3490 1.8197 1.5089 40 1 9.7174 3.6633 4.2214 41 1 11.8105 2.2498 -2.2696 42 1 11.6438 3.6849 -1.2299 43 1 12.8672 2.5136 0.5817 44 1 13.8484 2.5978 -0.9012 45 1 13.9449 0.3324 0.1016 46 1 13.1538 0.2924 -1.4923 47 1 11.7234 0.3809 1.2027 48 1 11.8898 -1.0539 0.1628 49 1 9.6852 0.0325 -0.1664 50 1 10.6664 0.1175 -1.6487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115795237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:40 Heat of formation + Delta-G solvation = 28.150048 kcal Electronic energy + Delta-G solvation = -29836.134021 eV Core-core repulsion = 25899.026810 eV Total energy + Delta-G solvation = -3937.107211 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.20800 -40.79535 -39.62952 -36.91625 -35.86627 -35.02999 -33.60251 -32.84290 -31.84882 -31.52166 -30.21135 -28.07317 -26.80622 -25.67549 -24.41932 -23.65158 -23.31176 -22.46754 -21.75170 -21.11128 -19.82663 -19.19265 -18.87681 -17.29475 -17.17859 -17.02068 -16.64471 -16.17788 -16.02422 -15.69907 -15.65348 -15.47699 -15.27301 -14.90805 -14.51782 -14.44425 -14.28989 -13.67193 -13.51190 -13.36708 -13.23661 -13.18370 -12.95793 -12.90327 -12.83403 -12.56698 -12.47529 -12.46080 -12.20396 -12.03431 -11.89741 -11.74440 -11.66105 -11.26475 -11.24242 -11.16834 -11.10957 -10.70987 -10.66716 -10.37527 -9.83101 -8.87505 -7.84861 -5.08986 0.16746 0.66778 1.13759 1.43095 1.45271 1.51223 2.23709 2.39789 2.59754 3.24733 3.38329 3.48639 3.82400 3.83136 3.84399 3.93945 3.98001 4.06516 4.16002 4.16276 4.23363 4.42262 4.45819 4.49850 4.54089 4.68290 4.72178 4.78528 4.79856 4.83775 4.84473 4.95328 4.99813 5.09581 5.10741 5.17700 5.20610 5.24536 5.32922 5.46655 5.51027 5.52122 5.53522 5.59174 5.61744 5.72481 5.82981 6.37132 6.56359 6.95138 7.23392 7.45717 8.20619 8.44960 9.37836 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.003298 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.483781 B = 8488.381729 C = 9730.173875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.348 5.348 5 C 0.108 3.892 6 C -0.126 4.126 7 C 0.595 3.405 8 O -0.579 6.579 9 N -0.684 5.684 10 C 0.121 3.879 11 C 0.187 3.813 12 N -0.710 5.710 13 C -0.203 4.203 14 H 0.065 0.935 15 C -0.069 4.069 16 N -0.961 5.961 17 Si 0.946 3.054 18 H -0.302 1.302 19 H -0.299 1.299 20 H -0.273 1.273 21 C -0.113 4.113 22 C -0.107 4.107 23 C -0.106 4.106 24 C -0.113 4.113 25 C -0.109 4.109 26 N -0.229 5.229 27 N -0.091 5.091 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.143 0.857 35 H 0.240 0.760 36 H 0.407 0.593 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.375 0.625 40 H 0.244 0.756 41 H 0.077 0.923 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.040 0.960 48 H 0.073 0.927 49 H 0.052 0.948 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.271 -8.545 -12.198 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C -0.009 4.009 4 N -0.133 5.133 5 C -0.050 4.050 6 C -0.266 4.266 7 C 0.380 3.620 8 O -0.459 6.459 9 N -0.331 5.331 10 C -0.005 4.005 11 C 0.097 3.903 12 N -0.350 5.350 13 C -0.335 4.335 14 H 0.083 0.917 15 C -0.261 4.261 16 N -0.613 5.613 17 Si 0.778 3.222 18 H -0.230 1.230 19 H -0.226 1.226 20 H -0.198 1.198 21 C -0.153 4.153 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.151 4.151 25 C -0.147 4.147 26 N -0.102 5.102 27 N -0.071 5.071 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.161 0.839 35 H 0.256 0.744 36 H 0.243 0.757 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.208 0.792 40 H 0.053 0.947 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.059 0.941 48 H 0.092 0.908 49 H 0.071 0.929 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.313 -8.762 -11.640 19.735 hybrid contribution -0.158 1.553 0.751 1.732 sum -13.471 -7.209 -10.888 18.761 Atomic orbital electron populations 1.21675 0.92055 1.03153 1.03303 1.21782 0.98306 0.94121 1.02977 1.22677 0.69879 1.00804 1.07566 1.50886 1.10109 1.33733 1.18600 1.23825 0.88897 0.96032 0.96245 1.21593 0.95499 1.09813 0.99669 1.17016 0.82553 0.79440 0.82993 1.90712 1.87288 1.40511 1.27424 1.45615 1.04875 1.51696 1.30963 1.21866 0.84792 0.98394 0.95453 1.20087 0.91624 0.93691 0.84934 1.42503 1.86854 1.03846 1.01817 1.19228 1.36970 0.85130 0.92202 0.91688 1.25205 1.04717 0.99616 0.96546 1.69779 1.58892 1.33011 0.99597 0.85528 0.76917 0.83035 0.76686 1.23023 1.22616 1.19796 1.21787 0.95004 0.99620 0.98898 1.21314 0.96745 0.96404 0.99967 1.21444 0.97109 0.94613 1.01187 1.21437 0.94680 1.00061 0.98879 1.21676 0.98121 0.93427 1.01497 1.74682 1.13812 1.11152 1.10569 1.81867 0.93428 1.18679 1.13126 0.91701 0.91619 0.90712 0.91551 0.92140 0.87280 0.83912 0.74384 0.75707 0.90801 0.94107 0.79161 0.94704 0.90463 0.94093 0.94151 0.92068 0.92119 0.90541 0.94094 0.90813 0.92947 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.91 71.98 0.71 -0.22 16 2 C -0.13 -1.51 6.14 30.60 0.19 -1.32 16 3 C 0.11 1.23 6.54 86.38 0.56 1.80 16 4 N -0.35 -7.80 3.69 -347.09 -1.28 -9.08 16 5 C 0.11 2.63 11.27 83.85 0.95 3.57 16 6 C -0.13 -4.30 6.99 40.82 0.29 -4.02 16 7 C 0.60 23.04 7.82 86.69 0.68 23.72 16 8 O -0.58 -23.80 16.86 -4.00 -0.07 -23.87 16 9 N -0.68 -26.75 5.13 -466.28 -2.39 -29.14 16 10 C 0.12 4.52 4.32 86.38 0.37 4.89 16 11 C 0.19 6.79 0.40 3.60 0.00 6.79 16 12 N -0.71 -32.87 3.56 -303.34 -1.08 -33.95 16 13 C -0.20 -10.81 8.72 84.03 0.73 -10.07 16 14 H 0.07 3.47 6.75 -2.91 -0.02 3.45 16 15 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 16 N -0.96 -58.57 13.07 21.65 0.28 -58.29 16 17 Si 0.95 47.78 29.55 68.60 2.03 49.81 16 18 H -0.30 -15.52 7.11 99.48 0.71 -14.82 16 19 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 20 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 21 C -0.11 -3.78 4.56 30.59 0.14 -3.64 16 22 C -0.11 -3.44 5.76 30.59 0.18 -3.27 16 23 C -0.11 -2.84 5.92 30.59 0.18 -2.66 16 24 C -0.11 -3.33 5.75 30.59 0.18 -3.15 16 25 C -0.11 -3.32 4.65 30.60 0.14 -3.17 16 26 N -0.23 -8.52 12.04 -50.00 -0.60 -9.12 16 27 N -0.09 -2.91 13.65 37.02 0.51 -2.40 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 34 H 0.14 0.55 8.08 -2.39 -0.02 0.53 16 35 H 0.24 3.73 8.06 -2.91 -0.02 3.71 16 36 H 0.41 16.68 6.96 -92.71 -0.65 16.03 16 37 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.04 1.75 7.58 -2.39 -0.02 1.73 16 39 H 0.37 19.09 6.53 -92.70 -0.61 18.49 16 40 H 0.24 14.79 8.31 -92.71 -0.77 14.01 16 41 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.04 1.54 7.16 -2.39 -0.02 1.52 16 43 H 0.04 1.63 7.61 -2.39 -0.02 1.61 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.04 1.48 6.86 -2.39 -0.02 1.46 16 48 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.05 1.68 7.11 -2.39 -0.02 1.66 16 50 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -73.45 400.00 2.85 -70.59 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: -0.30 Total: 39.66 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 5.76 Total: 5.79 kcal Atomic # 7 Polarization: -137.42 SS G_CDS: -4.57 Total: -141.98 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.07 Total: -23.87 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -73.45 2.85 -70.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115795237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.741 kcal (2) G-P(sol) polarization free energy of solvation -73.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds