Wall clock time and date at job start Tue Mar 31 2020 19:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47174 * 2 1 4 4 N 1.46500 * 109.47177 * 120.00107 * 2 1 3 5 5 C 1.34810 * 126.59496 * 275.26584 * 4 2 1 6 6 C 1.36598 * 106.83678 * 180.15196 * 5 4 2 7 7 C 1.47523 * 125.76911 * 179.90245 * 6 5 4 8 8 O 1.21597 * 120.00002 * 359.71721 * 7 6 5 9 9 N 1.34772 * 120.00213 * 179.71628 * 7 6 5 10 10 C 1.46501 * 120.00156 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47074 * 176.26094 * 10 9 7 12 12 N 1.46499 * 109.47079 * 54.66410 * 11 10 9 13 13 C 1.36935 * 120.00144 * 63.15979 * 12 11 10 14 14 H 1.08005 * 119.99749 * 353.79648 * 13 12 11 15 15 C 1.38807 * 120.00197 * 173.52152 * 13 12 11 16 16 N 1.31618 * 119.99771 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00076 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47254 * 89.99850 * 17 15 13 19 19 H 1.48504 * 109.47485 * 209.99822 * 17 15 13 20 20 H 1.48503 * 109.47262 * 330.00045 * 17 15 13 21 21 C 1.52994 * 109.47245 * 174.66793 * 11 10 9 22 22 C 1.53002 * 109.47245 * 180.02562 * 21 11 10 23 23 C 1.53001 * 109.47287 * 299.99819 * 22 21 11 24 24 C 1.52994 * 109.46830 * 59.99927 * 23 22 21 25 25 C 1.53001 * 109.47287 * 294.66612 * 11 10 9 26 26 N 1.34396 * 108.46165 * 359.63789 * 6 5 4 27 27 N 1.28764 * 109.52136 * 0.22822 * 26 6 5 28 28 H 1.09003 * 109.47143 * 299.99844 * 1 2 3 29 29 H 1.08998 * 109.47108 * 59.99273 * 1 2 3 30 30 H 1.08996 * 109.46943 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47036 * 240.00357 * 2 1 3 32 32 H 1.09000 * 109.47246 * 300.00635 * 3 2 1 33 33 H 1.09003 * 109.46958 * 60.00043 * 3 2 1 34 34 H 1.08999 * 109.47154 * 179.97438 * 3 2 1 35 35 H 1.07996 * 126.58389 * 0.02562 * 5 4 2 36 36 H 0.96999 * 119.99947 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.46923 * 56.26533 * 10 9 7 38 38 H 1.08999 * 109.47630 * 296.25767 * 10 9 7 39 39 H 0.96997 * 120.00157 * 243.15029 * 12 11 10 40 40 H 0.97007 * 119.99739 * 180.02562 * 16 15 13 41 41 H 1.09007 * 109.46966 * 299.99920 * 21 11 10 42 42 H 1.08996 * 109.47701 * 59.99762 * 21 11 10 43 43 H 1.08999 * 109.47048 * 179.97438 * 22 21 11 44 44 H 1.08998 * 109.47285 * 60.00016 * 22 21 11 45 45 H 1.09003 * 109.46436 * 300.00259 * 23 22 21 46 46 H 1.08993 * 109.47035 * 179.97438 * 23 22 21 47 47 H 1.09007 * 109.46966 * 180.02562 * 24 23 22 48 48 H 1.08996 * 109.47701 * 60.00337 * 24 23 22 49 49 H 1.08998 * 109.47119 * 300.00299 * 25 11 10 50 50 H 1.08999 * 109.47147 * 59.99975 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1926 -0.1527 2.4199 6 6 2.6643 -1.1490 3.2266 7 6 3.0006 -1.0142 4.6566 8 8 2.8687 0.0586 5.2137 9 7 3.4539 -2.0801 5.3457 10 6 3.7883 -1.9461 6.7657 11 6 4.1857 -3.3127 7.3272 12 7 5.2673 -3.8779 6.5167 13 6 6.4786 -3.2425 6.4524 14 1 6.6064 -2.2754 6.9161 15 6 7.5438 -3.8437 5.7963 16 7 8.7079 -3.2327 5.7340 17 14 7.3252 -5.5200 5.0016 18 1 6.8794 -5.3470 3.5957 19 1 8.6176 -6.2511 5.0246 20 1 6.3049 -6.2947 5.7527 21 6 4.6619 -3.1515 8.7722 22 6 5.0600 -4.5181 9.3335 23 6 3.8519 -5.4562 9.2964 24 6 3.3757 -5.6174 7.8514 25 6 2.9773 -4.2504 7.2902 26 7 2.7648 -2.2743 2.4986 27 7 2.3900 -2.0394 1.2894 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.9986 0.8702 2.7070 36 1 3.5594 -2.9358 4.9013 37 1 2.9222 -1.5680 7.3089 38 1 4.6202 -1.2509 6.8791 39 1 5.1255 -4.7023 6.0257 40 1 9.4522 -3.6527 5.2752 41 1 5.5229 -2.4835 8.7986 42 1 3.8573 -2.7310 9.3753 43 1 5.3997 -4.4031 10.3628 44 1 5.8649 -4.9382 8.7305 45 1 3.0470 -5.0360 9.8995 46 1 4.1356 -6.4298 9.6959 47 1 2.5147 -6.2855 7.8250 48 1 4.1805 -6.0375 7.2483 49 1 2.1725 -3.8298 7.8932 50 1 2.6380 -4.3653 6.2608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115795290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:44 Heat of formation + Delta-G solvation = 56.517556 kcal Electronic energy + Delta-G solvation = -30135.027427 eV Core-core repulsion = 26199.150324 eV Total energy + Delta-G solvation = -3935.877103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.19266 -39.44051 -38.29326 -36.68787 -34.47390 -33.24419 -31.66347 -31.35272 -30.65825 -30.26981 -29.05581 -27.89703 -25.76905 -24.04138 -23.40480 -23.08520 -22.08024 -20.93678 -20.55124 -19.94202 -18.42064 -17.83494 -17.69200 -16.22741 -16.06994 -15.57813 -15.12248 -15.00558 -14.61718 -14.55175 -14.35019 -14.20792 -13.72488 -13.55191 -13.41963 -13.18117 -13.04451 -12.84181 -12.53796 -12.23024 -12.16579 -12.13993 -11.99240 -11.88718 -11.67213 -11.59577 -11.20597 -11.12868 -10.90316 -10.77307 -10.54402 -10.40213 -10.20977 -10.00433 -9.88329 -9.67090 -9.58434 -9.30340 -9.23120 -8.82845 -8.40464 -7.23995 -5.71625 -3.08152 1.16841 1.90373 1.93136 3.41899 3.44637 3.50793 3.56204 3.68952 3.99908 4.27044 4.29254 4.47948 4.64024 4.79828 4.92213 4.94584 5.05656 5.09386 5.13174 5.16736 5.21682 5.23796 5.35922 5.41143 5.57051 5.58956 5.60769 5.68980 5.78789 5.89025 5.93416 5.99767 6.08549 6.12652 6.18220 6.25653 6.34679 6.40425 6.50211 6.56064 6.68556 6.77079 6.78614 6.98839 7.05580 7.15152 7.89108 8.04195 8.15957 8.46917 8.64044 9.24488 9.96723 10.15841 11.46411 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.003435 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.567204 B = 8148.873106 C = 9070.656004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 C -0.169 4.169 4 N -0.359 5.359 5 C 0.088 3.912 6 C -0.092 4.092 7 C 0.598 3.402 8 O -0.554 6.554 9 N -0.684 5.684 10 C 0.116 3.884 11 C 0.197 3.803 12 N -0.736 5.736 13 C -0.234 4.234 14 H 0.091 0.909 15 C 0.010 3.990 16 N -0.932 5.932 17 Si 0.874 3.126 18 H -0.284 1.284 19 H -0.294 1.294 20 H -0.275 1.275 21 C -0.114 4.114 22 C -0.110 4.110 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.119 4.119 26 N -0.200 5.200 27 N -0.070 5.070 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.200 0.800 36 H 0.408 0.592 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.362 0.638 40 H 0.258 0.742 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.357 5.289 -6.870 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.043 3.957 3 C -0.228 4.228 4 N -0.146 5.146 5 C -0.068 4.068 6 C -0.231 4.231 7 C 0.381 3.619 8 O -0.433 6.433 9 N -0.332 5.332 10 C -0.010 4.010 11 C 0.106 3.894 12 N -0.379 5.379 13 C -0.364 4.364 14 H 0.109 0.891 15 C -0.186 4.186 16 N -0.580 5.580 17 Si 0.705 3.295 18 H -0.211 1.211 19 H -0.221 1.221 20 H -0.201 1.201 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.151 4.151 24 C -0.154 4.154 25 C -0.157 4.157 26 N -0.074 5.074 27 N -0.050 5.050 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.217 0.783 36 H 0.245 0.755 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.195 0.805 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.083 0.917 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.089 4.855 -7.208 20.069 hybrid contribution 0.056 -0.580 -0.600 0.836 sum -18.033 4.275 -7.808 20.111 Atomic orbital electron populations 1.22252 0.92649 1.03779 1.03700 1.21592 0.95521 0.93436 0.85195 1.22270 1.02892 0.93345 1.04245 1.50721 1.44913 1.09944 1.08974 1.23206 0.98029 1.01027 0.84564 1.21618 1.13421 0.90545 0.97536 1.16723 0.77677 0.84395 0.83101 1.90760 1.56059 1.26996 1.69472 1.45563 1.63412 1.12653 1.11612 1.21928 0.99572 0.99894 0.79630 1.19774 0.88124 0.90356 0.91152 1.42816 1.11078 1.28137 1.55854 1.18915 0.85767 1.01678 1.30000 0.89125 1.24623 0.95408 0.97651 1.00938 1.69698 1.01551 1.38791 1.47965 0.86712 0.76885 0.85988 0.79928 1.21103 1.22080 1.20074 1.21762 1.00592 0.97590 0.95387 1.21370 0.98075 0.95525 0.99749 1.21494 0.98258 0.99141 0.96244 1.21503 1.00421 0.96670 0.96844 1.21764 0.97441 0.95784 1.00670 1.74673 1.10570 1.23496 0.98653 1.81981 1.18610 0.91703 1.12681 0.91464 0.89819 0.91261 0.86906 0.89411 0.91031 0.90966 0.78310 0.75518 0.92379 0.91020 0.80466 0.93235 0.91087 0.93419 0.93407 0.90221 0.92912 0.93014 0.93034 0.91483 0.91739 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 9.52 37.16 0.35 -0.52 16 2 C 0.14 0.99 3.96 -67.93 -0.27 0.72 16 3 C -0.17 -0.85 8.85 37.16 0.33 -0.52 16 4 N -0.36 -4.13 3.54 -54.56 -0.19 -4.33 16 5 C 0.09 1.11 10.40 -16.84 -0.18 0.93 16 6 C -0.09 -1.50 6.99 -83.55 -0.58 -2.08 16 7 C 0.60 11.02 7.82 -12.48 -0.10 10.92 16 8 O -0.55 -11.13 16.86 5.28 0.09 -11.04 16 9 N -0.68 -12.59 5.09 -61.35 -0.31 -12.91 16 10 C 0.12 2.11 4.37 -4.04 -0.02 2.10 16 11 C 0.20 3.50 0.41 -131.82 -0.05 3.45 16 12 N -0.74 -15.83 3.18 -47.23 -0.15 -15.98 16 13 C -0.23 -6.14 9.18 -15.06 -0.14 -6.28 16 14 H 0.09 2.61 7.01 -52.48 -0.37 2.24 16 15 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 16 N -0.93 -28.89 13.97 55.49 0.78 -28.12 16 17 Si 0.87 21.84 27.67 -169.99 -4.70 17.14 16 18 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 20 H -0.27 -6.38 6.62 56.52 0.37 -6.00 16 21 C -0.11 -1.95 4.51 -26.73 -0.12 -2.07 16 22 C -0.11 -1.83 5.77 -26.73 -0.15 -1.98 16 23 C -0.11 -1.63 5.92 -26.73 -0.16 -1.79 16 24 C -0.12 -1.73 5.75 -26.71 -0.15 -1.88 16 25 C -0.12 -1.79 4.65 -26.70 -0.12 -1.92 16 26 N -0.20 -3.47 12.04 32.85 0.40 -3.07 16 27 N -0.07 -1.08 13.78 60.35 0.83 -0.24 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.33 7.23 -51.93 -0.38 -0.04 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.20 1.89 7.35 -52.49 -0.39 1.50 16 36 H 0.41 7.61 7.08 -40.82 -0.29 7.32 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.51 7.51 -51.93 -0.39 1.12 16 39 H 0.36 7.87 4.58 -40.82 -0.19 7.68 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.07 1.38 7.23 -51.93 -0.38 1.01 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.59 7.60 -51.93 -0.39 1.19 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.07 1.13 6.92 -51.93 -0.36 0.78 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.06 0.89 7.29 -51.93 -0.38 0.51 16 LS Contribution 394.53 15.07 5.95 5.95 Total: -1.00 -33.42 394.53 -6.94 -40.37 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -8.16 Total: 12.98 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -1.46 Total: -0.75 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: 1.35 Total: -64.65 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.70 Total: 17.14 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.42 -6.94 -40.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115795290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.885 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds