Wall clock time and date at job start Tue Mar 31 2020 19:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47174 * 2 1 4 4 N 1.46500 * 109.47177 * 120.00107 * 2 1 3 5 5 C 1.34810 * 126.59496 * 275.26584 * 4 2 1 6 6 C 1.36598 * 106.83678 * 180.15196 * 5 4 2 7 7 C 1.47523 * 125.76911 * 179.90245 * 6 5 4 8 8 O 1.21597 * 120.00002 * 359.71721 * 7 6 5 9 9 N 1.34772 * 120.00213 * 179.71628 * 7 6 5 10 10 C 1.46501 * 120.00156 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47074 * 176.26094 * 10 9 7 12 12 N 1.46499 * 109.47079 * 54.66410 * 11 10 9 13 13 C 1.36935 * 120.00144 * 63.15979 * 12 11 10 14 14 H 1.08005 * 119.99749 * 353.79648 * 13 12 11 15 15 C 1.38807 * 120.00197 * 173.52152 * 13 12 11 16 16 N 1.31618 * 119.99771 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00076 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47254 * 89.99850 * 17 15 13 19 19 H 1.48504 * 109.47485 * 209.99822 * 17 15 13 20 20 H 1.48503 * 109.47262 * 330.00045 * 17 15 13 21 21 C 1.52994 * 109.47245 * 174.66793 * 11 10 9 22 22 C 1.53002 * 109.47245 * 180.02562 * 21 11 10 23 23 C 1.53001 * 109.47287 * 299.99819 * 22 21 11 24 24 C 1.52994 * 109.46830 * 59.99927 * 23 22 21 25 25 C 1.53001 * 109.47287 * 294.66612 * 11 10 9 26 26 N 1.34396 * 108.46165 * 359.63789 * 6 5 4 27 27 N 1.28764 * 109.52136 * 0.22822 * 26 6 5 28 28 H 1.09003 * 109.47143 * 299.99844 * 1 2 3 29 29 H 1.08998 * 109.47108 * 59.99273 * 1 2 3 30 30 H 1.08996 * 109.46943 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47036 * 240.00357 * 2 1 3 32 32 H 1.09000 * 109.47246 * 300.00635 * 3 2 1 33 33 H 1.09003 * 109.46958 * 60.00043 * 3 2 1 34 34 H 1.08999 * 109.47154 * 179.97438 * 3 2 1 35 35 H 1.07996 * 126.58389 * 0.02562 * 5 4 2 36 36 H 0.96999 * 119.99947 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.46923 * 56.26533 * 10 9 7 38 38 H 1.08999 * 109.47630 * 296.25767 * 10 9 7 39 39 H 0.96997 * 120.00157 * 243.15029 * 12 11 10 40 40 H 0.97007 * 119.99739 * 180.02562 * 16 15 13 41 41 H 1.09007 * 109.46966 * 299.99920 * 21 11 10 42 42 H 1.08996 * 109.47701 * 59.99762 * 21 11 10 43 43 H 1.08999 * 109.47048 * 179.97438 * 22 21 11 44 44 H 1.08998 * 109.47285 * 60.00016 * 22 21 11 45 45 H 1.09003 * 109.46436 * 300.00259 * 23 22 21 46 46 H 1.08993 * 109.47035 * 179.97438 * 23 22 21 47 47 H 1.09007 * 109.46966 * 180.02562 * 24 23 22 48 48 H 1.08996 * 109.47701 * 60.00337 * 24 23 22 49 49 H 1.08998 * 109.47119 * 300.00299 * 25 11 10 50 50 H 1.08999 * 109.47147 * 59.99975 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1926 -0.1527 2.4199 6 6 2.6643 -1.1490 3.2266 7 6 3.0006 -1.0142 4.6566 8 8 2.8687 0.0586 5.2137 9 7 3.4539 -2.0801 5.3457 10 6 3.7883 -1.9461 6.7657 11 6 4.1857 -3.3127 7.3272 12 7 5.2673 -3.8779 6.5167 13 6 6.4786 -3.2425 6.4524 14 1 6.6064 -2.2754 6.9161 15 6 7.5438 -3.8437 5.7963 16 7 8.7079 -3.2327 5.7340 17 14 7.3252 -5.5200 5.0016 18 1 6.8794 -5.3470 3.5957 19 1 8.6176 -6.2511 5.0246 20 1 6.3049 -6.2947 5.7527 21 6 4.6619 -3.1515 8.7722 22 6 5.0600 -4.5181 9.3335 23 6 3.8519 -5.4562 9.2964 24 6 3.3757 -5.6174 7.8514 25 6 2.9773 -4.2504 7.2902 26 7 2.7648 -2.2743 2.4986 27 7 2.3900 -2.0394 1.2894 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.9986 0.8702 2.7070 36 1 3.5594 -2.9358 4.9013 37 1 2.9222 -1.5680 7.3089 38 1 4.6202 -1.2509 6.8791 39 1 5.1255 -4.7023 6.0257 40 1 9.4522 -3.6527 5.2752 41 1 5.5229 -2.4835 8.7986 42 1 3.8573 -2.7310 9.3753 43 1 5.3997 -4.4031 10.3628 44 1 5.8649 -4.9382 8.7305 45 1 3.0470 -5.0360 9.8995 46 1 4.1356 -6.4298 9.6959 47 1 2.5147 -6.2855 7.8250 48 1 4.1805 -6.0375 7.2483 49 1 2.1725 -3.8298 7.8932 50 1 2.6380 -4.3653 6.2608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115795290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:43 Heat of formation + Delta-G solvation = 33.029705 kcal Electronic energy + Delta-G solvation = -30136.045937 eV Core-core repulsion = 26199.150324 eV Total energy + Delta-G solvation = -3936.895613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.28457 -40.89584 -39.71848 -37.42743 -35.92998 -35.09190 -33.14658 -32.50643 -31.95209 -31.57402 -30.68309 -28.31200 -27.08058 -25.39409 -24.97370 -24.33784 -23.39921 -21.85888 -21.81307 -21.24183 -19.82007 -19.71584 -19.05076 -17.28924 -17.10911 -17.03481 -16.49320 -16.29725 -16.04374 -15.72380 -15.61545 -15.42344 -15.12856 -14.92294 -14.63652 -14.31806 -14.21130 -13.91504 -13.62480 -13.55651 -13.32995 -13.29267 -13.18737 -12.94027 -12.84816 -12.66160 -12.55493 -12.36101 -12.34817 -12.10196 -12.05889 -11.88895 -11.67515 -11.33501 -11.33330 -11.25727 -11.12843 -10.75952 -10.72468 -10.41640 -9.89156 -9.23260 -7.93663 -5.25394 0.13890 0.62300 1.07168 1.38950 1.41388 1.47313 2.19000 2.33504 2.53345 3.19311 3.33636 3.37868 3.56391 3.75687 3.79314 3.89444 3.92151 3.97321 3.99341 4.07618 4.22075 4.37282 4.45242 4.57391 4.60640 4.64140 4.65306 4.73105 4.75463 4.76515 4.78875 4.88899 4.91702 4.95867 5.05351 5.15350 5.17088 5.19430 5.23334 5.41227 5.43990 5.49421 5.50747 5.54432 5.64446 5.75926 5.90601 6.30451 6.51305 6.91205 7.17011 7.18967 7.92111 8.10842 9.28267 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.003435 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.567204 B = 8148.873106 C = 9070.656004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 C -0.166 4.166 4 N -0.342 5.342 5 C 0.109 3.891 6 C -0.123 4.123 7 C 0.596 3.404 8 O -0.576 6.576 9 N -0.687 5.687 10 C 0.122 3.878 11 C 0.194 3.806 12 N -0.733 5.733 13 C -0.194 4.194 14 H 0.056 0.944 15 C -0.061 4.061 16 N -0.987 5.987 17 Si 0.937 3.063 18 H -0.290 1.290 19 H -0.306 1.306 20 H -0.245 1.245 21 C -0.112 4.112 22 C -0.109 4.109 23 C -0.108 4.108 24 C -0.116 4.116 25 C -0.112 4.112 26 N -0.230 5.230 27 N -0.092 5.092 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.053 0.947 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.232 0.768 36 H 0.407 0.593 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.364 0.636 40 H 0.251 0.749 41 H 0.035 0.965 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.040 0.960 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.041 0.959 49 H 0.092 0.908 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.060 5.090 -7.296 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 C -0.224 4.224 4 N -0.128 5.128 5 C -0.049 4.049 6 C -0.263 4.263 7 C 0.381 3.619 8 O -0.456 6.456 9 N -0.335 5.335 10 C -0.004 4.004 11 C 0.104 3.896 12 N -0.376 5.376 13 C -0.325 4.325 14 H 0.074 0.926 15 C -0.252 4.252 16 N -0.639 5.639 17 Si 0.766 3.234 18 H -0.217 1.217 19 H -0.233 1.233 20 H -0.170 1.170 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.154 4.154 25 C -0.150 4.150 26 N -0.103 5.103 27 N -0.071 5.071 28 H 0.087 0.913 29 H 0.132 0.868 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.248 0.752 36 H 0.243 0.757 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.198 0.802 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.060 0.940 49 H 0.110 0.890 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.871 4.632 -7.642 23.626 hybrid contribution 1.103 -0.326 -0.499 1.254 sum -20.768 4.306 -8.140 22.718 Atomic orbital electron populations 1.22250 0.90910 1.03313 1.05299 1.22152 0.96829 0.94250 0.83526 1.22311 1.01994 0.91986 1.06102 1.51117 1.42929 1.08797 1.09914 1.23611 0.95746 1.01438 0.84135 1.21526 1.16018 0.91837 0.96938 1.17012 0.76974 0.83895 0.84000 1.90730 1.57098 1.27549 1.70257 1.45597 1.63534 1.12771 1.11622 1.21829 0.99021 0.99322 0.80218 1.20043 0.88230 0.90669 0.90684 1.42776 1.10413 1.27869 1.56521 1.18760 0.87188 0.99895 1.26637 0.92591 1.25291 0.95322 1.01514 1.03077 1.69877 1.02667 1.40808 1.50542 0.85671 0.76841 0.82075 0.78777 1.21659 1.23309 1.16952 1.21737 1.00260 0.97644 0.95493 1.21333 0.98341 0.95427 0.99526 1.21467 0.97511 0.99081 0.96439 1.21512 1.00712 0.96586 0.96578 1.21743 0.96278 0.95393 1.01588 1.74632 1.11704 1.24518 0.99430 1.81872 1.19361 0.93866 1.12024 0.91268 0.86802 0.92737 0.86227 0.86493 0.90283 0.92375 0.75190 0.75661 0.90245 0.94778 0.80210 0.93991 0.94619 0.90204 0.92250 0.94137 0.90361 0.91898 0.90163 0.93972 0.88989 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.52 71.98 0.69 -0.54 16 2 C 0.13 1.49 3.96 44.99 0.18 1.67 16 3 C -0.17 -1.16 8.85 71.98 0.64 -0.53 16 4 N -0.34 -7.37 3.54 -326.54 -1.16 -8.52 16 5 C 0.11 2.58 10.40 83.85 0.87 3.45 16 6 C -0.12 -4.01 6.99 40.82 0.29 -3.72 16 7 C 0.60 22.12 7.82 86.69 0.68 22.80 16 8 O -0.58 -23.15 16.86 -4.02 -0.07 -23.21 16 9 N -0.69 -25.52 5.09 -466.27 -2.37 -27.89 16 10 C 0.12 4.48 4.37 86.38 0.38 4.86 16 11 C 0.19 6.75 0.41 3.60 0.00 6.75 16 12 N -0.73 -31.86 3.18 -303.35 -0.97 -32.83 16 13 C -0.19 -10.60 9.18 84.03 0.77 -9.83 16 14 H 0.06 3.44 7.01 -2.91 -0.02 3.42 16 15 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 16 N -0.99 -64.30 13.97 21.65 0.30 -64.00 16 17 Si 0.94 46.49 27.67 68.60 1.90 48.39 16 18 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 19 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 20 H -0.25 -10.82 6.62 99.48 0.66 -10.16 16 21 C -0.11 -3.77 4.51 30.59 0.14 -3.63 16 22 C -0.11 -3.49 5.77 30.60 0.18 -3.31 16 23 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 24 C -0.12 -3.05 5.75 30.61 0.18 -2.88 16 25 C -0.11 -3.07 4.65 30.61 0.14 -2.92 16 26 N -0.23 -7.99 12.04 -50.00 -0.60 -8.59 16 27 N -0.09 -2.78 13.78 37.02 0.51 -2.26 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 29 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.08 0.46 7.23 -2.39 -0.02 0.45 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.23 3.79 7.35 -2.91 -0.02 3.77 16 36 H 0.41 15.29 7.08 -92.71 -0.66 14.63 16 37 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.03 1.50 7.51 -2.39 -0.02 1.48 16 39 H 0.36 15.67 4.58 -92.71 -0.42 15.24 16 40 H 0.25 15.86 8.31 -92.70 -0.77 15.09 16 41 H 0.03 1.44 7.23 -2.38 -0.02 1.42 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.04 1.61 7.60 -2.39 -0.02 1.59 16 45 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 48 H 0.04 1.32 6.92 -2.39 -0.02 1.30 16 49 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.06 1.68 7.29 -2.39 -0.02 1.66 16 Total: -1.00 -77.90 394.53 3.14 -74.76 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: -0.18 Total: 37.65 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 5.77 Total: 6.50 kcal Atomic # 7 Polarization: -139.81 SS G_CDS: -4.28 Total: -144.09 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.07 Total: -23.21 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.90 Total: 48.39 kcal Total: -77.90 3.14 -74.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115795290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.792 kcal (2) G-P(sol) polarization free energy of solvation -77.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds