Wall clock time and date at job start Tue Mar 31 2020 18:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 H 1.09004 * 109.47066 * 54.99931 * 3 2 1 5 5 C 1.53000 * 109.47166 * 294.99927 * 3 2 1 6 6 C 1.50702 * 109.47159 * 174.99728 * 3 2 1 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 3 2 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 3 10 10 H 1.09004 * 107.87991 * 325.00403 * 9 8 6 11 11 C 1.50958 * 108.02807 * 81.55077 * 9 8 6 12 12 C 1.53671 * 110.96499 * 194.29887 * 11 9 8 13 13 C 1.51891 * 106.89588 * 280.90875 * 12 11 9 14 14 N 1.29902 * 127.80789 * 245.11976 * 13 12 11 15 15 N 1.29034 * 109.22017 * 179.74693 * 14 13 12 16 16 C 1.30970 * 109.71056 * 0.06809 * 15 14 13 17 17 C 1.50699 * 126.61319 * 180.13084 * 16 15 14 18 18 N 1.46502 * 109.46897 * 269.96918 * 17 16 15 19 19 C 1.36938 * 119.99783 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00149 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00153 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99696 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00225 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47289 * 89.99883 * 23 21 19 25 25 H 1.48508 * 109.47091 * 210.00042 * 23 21 19 26 26 H 1.48498 * 109.47299 * 329.99776 * 23 21 19 27 27 N 1.34599 * 124.57306 * 65.07673 * 13 12 11 28 28 C 1.47496 * 125.03572 * 0.53000 * 27 13 12 29 29 C 1.50860 * 108.03000 * 208.45404 * 9 8 6 30 30 H 1.09001 * 109.47091 * 60.00619 * 1 2 3 31 31 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47103 * 299.99907 * 1 2 3 33 33 H 1.09005 * 109.47761 * 239.99871 * 2 1 3 34 34 H 1.09000 * 109.47436 * 120.00075 * 2 1 3 35 35 H 1.08996 * 109.46783 * 299.99412 * 5 3 2 36 36 H 1.08994 * 109.47175 * 59.99981 * 5 3 2 37 37 H 1.09001 * 109.46739 * 179.97438 * 5 3 2 38 38 H 0.97000 * 120.00317 * 0.28382 * 8 6 3 39 39 H 1.09001 * 109.17834 * 314.68256 * 11 9 8 40 40 H 1.09004 * 109.17708 * 73.96361 * 11 9 8 41 41 H 1.08998 * 109.96850 * 40.25184 * 12 11 9 42 42 H 1.08996 * 109.96852 * 161.56458 * 12 11 9 43 43 H 1.08993 * 109.47265 * 29.97253 * 17 16 15 44 44 H 1.09004 * 109.47413 * 149.97577 * 17 16 15 45 45 H 0.96999 * 120.00366 * 0.02562 * 18 17 16 46 46 H 0.97000 * 120.00263 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.93507 * 53.41700 * 28 27 13 48 48 H 1.08995 * 109.93159 * 174.55122 * 28 27 13 49 49 H 1.09005 * 109.14675 * 285.98516 * 29 9 8 50 50 H 1.08995 * 109.15280 * 45.14522 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 8 4.1451 0.3951 0.2038 8 7 4.2153 2.6116 0.1398 9 6 5.6758 2.6132 0.2541 10 1 5.9619 1.7830 0.8999 11 6 6.2522 2.3582 -1.1176 12 6 7.7426 1.9947 -1.0289 13 6 8.5040 3.2956 -0.8420 14 7 9.3515 3.8465 -1.6579 15 7 9.7809 4.9493 -1.1436 16 6 9.2200 5.1397 0.0245 17 6 9.4462 6.3069 0.9506 18 7 10.5540 6.0017 1.8594 19 6 10.9438 6.9208 2.7966 20 1 10.4343 7.8706 2.8661 21 6 11.9938 6.6319 3.6574 22 7 12.6150 5.4746 3.5724 23 14 12.5251 7.8853 4.9364 24 1 11.7627 7.6654 6.1916 25 1 13.9774 7.7323 5.2060 26 1 12.2576 9.2548 4.4283 27 7 8.4020 4.0919 0.2384 28 6 7.5480 3.8234 1.4106 29 6 6.0897 3.8959 0.9319 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0699 1.5875 -2.1491 36 1 0.5490 2.1252 -1.3969 37 1 1.9982 3.1543 -1.3071 38 1 3.7330 3.4508 0.0756 39 1 5.7105 1.5368 -1.5865 40 1 6.1387 3.2555 -1.7261 41 1 7.9152 1.3368 -0.1771 42 1 8.0618 1.5055 -1.9491 43 1 9.6902 7.1933 0.3651 44 1 8.5415 6.4918 1.5299 45 1 11.0118 5.1488 1.7967 46 1 13.3485 5.2725 4.1741 47 1 7.7607 2.8300 1.8056 48 1 7.7258 4.5748 2.1798 49 1 5.9844 4.7220 0.2287 50 1 5.4407 4.0727 1.7896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127943518.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:55 Heat of formation + Delta-G solvation = 37.380675 kcal Electronic energy + Delta-G solvation = -29351.576241 eV Core-core repulsion = 25414.869300 eV Total energy + Delta-G solvation = -3936.706941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.00696 -40.56491 -37.87004 -35.78038 -35.20102 -34.60029 -33.46053 -31.53252 -31.40946 -29.97649 -29.33546 -26.57809 -25.94016 -25.39203 -24.25372 -22.87992 -22.31691 -21.26947 -20.58756 -20.26722 -19.84183 -17.66067 -17.34865 -17.07781 -16.63252 -15.90079 -15.71424 -15.11726 -14.96518 -14.81204 -14.76383 -14.21148 -14.04835 -13.94360 -13.57603 -13.30417 -13.15614 -12.93666 -12.82475 -12.63286 -12.56268 -12.38602 -12.12303 -12.04316 -11.93728 -11.74505 -11.52970 -11.29512 -11.13739 -11.11631 -11.05383 -10.92228 -10.87193 -10.19030 -10.11800 -9.94141 -9.91362 -9.81108 -9.47695 -9.01300 -8.68494 -7.08405 -5.84931 -3.17314 2.14027 2.30884 2.70405 2.72063 3.23173 3.38574 3.44536 3.46593 4.08520 4.20735 4.29386 4.34268 4.42505 4.46768 4.51806 4.56219 4.76866 4.83354 4.87887 4.91525 4.93998 5.03485 5.07767 5.08561 5.13134 5.30205 5.32172 5.35846 5.41103 5.41840 5.50393 5.52486 5.64371 5.66864 5.72525 5.77546 5.79759 5.88355 5.92538 5.95041 6.09185 6.18552 6.29001 6.53492 6.57826 7.10719 7.15929 7.59716 7.87529 8.30151 9.13392 9.42719 9.93501 10.29728 11.37083 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018599 B = 0.002301 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.130404 B =12163.228602 C =12958.105822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.112 4.112 4 H 0.097 0.903 5 C -0.146 4.146 6 C 0.517 3.483 7 O -0.535 6.535 8 N -0.730 5.730 9 C 0.143 3.857 10 H 0.087 0.913 11 C -0.124 4.124 12 C -0.023 4.023 13 C 0.159 3.841 14 N -0.297 5.297 15 N -0.294 5.294 16 C 0.193 3.807 17 C 0.237 3.763 18 N -0.724 5.724 19 C -0.247 4.247 20 H 0.075 0.925 21 C -0.009 4.009 22 N -0.928 5.928 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 N -0.462 5.462 28 C 0.110 3.890 29 C -0.142 4.142 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.399 0.601 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.057 0.943 44 H 0.036 0.964 45 H 0.387 0.613 46 H 0.257 0.743 47 H 0.097 0.903 48 H 0.117 0.883 49 H 0.079 0.921 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.296 -8.725 -6.846 29.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.133 4.133 4 H 0.115 0.885 5 C -0.204 4.204 6 C 0.303 3.697 7 O -0.411 6.411 8 N -0.382 5.382 9 C 0.039 3.961 10 H 0.105 0.895 11 C -0.163 4.163 12 C -0.064 4.064 13 C -0.109 4.109 14 N -0.136 5.136 15 N -0.134 5.134 16 C -0.075 4.075 17 C 0.107 3.893 18 N -0.370 5.370 19 C -0.378 4.378 20 H 0.093 0.907 21 C -0.206 4.206 22 N -0.575 5.575 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 N -0.153 5.153 28 C -0.013 4.013 29 C -0.181 4.181 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.234 0.766 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.122 0.878 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.221 0.779 46 H 0.067 0.933 47 H 0.115 0.885 48 H 0.135 0.865 49 H 0.098 0.902 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -25.965 -9.098 -7.901 28.625 hybrid contribution -0.406 0.630 1.852 1.998 sum -26.372 -8.468 -6.048 28.350 Atomic orbital electron populations 1.21848 0.95444 1.02006 1.01853 1.21345 0.95379 0.94061 1.03594 1.21374 0.91725 0.99609 1.00591 0.88528 1.21835 1.02494 1.00157 0.95868 1.20738 0.90020 0.83559 0.75386 1.90719 1.70313 1.31304 1.48805 1.46281 1.07414 1.08925 1.75560 1.20377 0.79645 0.98877 0.97238 0.89495 1.21684 0.94879 1.02958 0.96804 1.20361 0.91852 0.89463 1.04681 1.24621 1.01594 0.97801 0.86877 1.74194 1.10428 1.03999 1.25015 1.74574 1.21192 1.10786 1.06807 1.25248 0.92580 0.92888 0.96768 1.19051 0.92934 0.88865 0.88437 1.42297 1.36825 1.20038 1.37873 1.19176 1.12973 0.96988 1.08674 0.90737 1.24798 0.98456 0.97302 0.99998 1.69682 1.25174 1.22196 1.40474 0.86128 0.77763 0.80532 0.81334 1.21642 1.21666 1.20564 1.46039 1.34295 1.18234 1.16750 1.22305 0.87370 1.04986 0.86644 1.21930 0.96238 0.97926 1.01981 0.92436 0.92404 0.92699 0.91268 0.91077 0.91953 0.91087 0.92200 0.76626 0.89878 0.91243 0.89401 0.87813 0.92581 0.94603 0.77922 0.93299 0.88452 0.86472 0.90230 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.67 37.16 0.36 -0.36 16 2 C -0.11 -0.68 4.75 -26.73 -0.13 -0.81 16 3 C -0.11 -0.63 2.73 -91.77 -0.25 -0.88 16 4 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 5 C -0.15 -0.63 8.84 37.16 0.33 -0.30 16 6 C 0.52 4.36 6.81 -10.98 -0.07 4.29 16 7 O -0.54 -6.65 15.24 5.55 0.08 -6.56 16 8 N -0.73 -4.93 4.83 -55.86 -0.27 -5.20 16 9 C 0.14 1.19 1.91 -70.03 -0.13 1.06 16 10 H 0.09 0.85 7.01 -51.93 -0.36 0.49 16 11 C -0.12 -1.17 5.12 -27.41 -0.14 -1.31 16 12 C -0.02 -0.26 6.02 -26.95 -0.16 -0.42 16 13 C 0.16 2.49 7.02 -155.73 -1.09 1.40 16 14 N -0.30 -5.84 12.23 32.85 0.40 -5.44 16 15 N -0.29 -6.33 12.24 32.71 0.40 -5.93 16 16 C 0.19 3.70 7.45 -155.39 -1.16 2.55 16 17 C 0.24 4.75 6.48 -5.19 -0.03 4.72 16 18 N -0.72 -18.16 5.59 -61.08 -0.34 -18.50 16 19 C -0.25 -6.70 9.99 -15.06 -0.15 -6.85 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 23 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 N -0.46 -7.12 2.72 -109.58 -0.30 -7.42 16 28 C 0.11 1.25 6.47 -3.16 -0.02 1.23 16 29 C -0.14 -1.14 5.07 -27.46 -0.14 -1.28 16 30 H 0.06 0.23 6.57 -51.93 -0.34 -0.11 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.56 7.96 -51.93 -0.41 0.14 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.24 6.56 -51.93 -0.34 -0.11 16 37 H 0.06 0.20 7.56 -51.93 -0.39 -0.19 16 38 H 0.40 1.75 7.98 -40.82 -0.33 1.42 16 39 H 0.08 0.81 7.54 -51.93 -0.39 0.41 16 40 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 41 H 0.09 0.91 7.89 -51.93 -0.41 0.50 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.64 7.46 -51.93 -0.39 0.25 16 45 H 0.39 10.66 7.66 -40.82 -0.31 10.34 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.10 1.01 7.87 -51.93 -0.41 0.60 16 48 H 0.12 1.40 7.16 -51.93 -0.37 1.02 16 49 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 50 H 0.10 0.58 8.12 -51.93 -0.42 0.16 16 LS Contribution 397.10 15.07 5.98 5.98 Total: -1.00 -35.34 397.10 -9.45 -44.78 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.22 Total: 5.91 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -2.89 Total: 2.68 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: 0.62 Total: -69.67 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: 0.08 Total: -6.56 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.34 -9.45 -44.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127943518.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.165 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds