Wall clock time and date at job start Tue Mar 31 2020 18:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 H 1.09004 * 109.47066 * 54.99931 * 3 2 1 5 5 C 1.53000 * 109.47166 * 294.99927 * 3 2 1 6 6 C 1.50702 * 109.47159 * 174.99728 * 3 2 1 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 3 2 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 3 10 10 H 1.09004 * 107.87991 * 325.00403 * 9 8 6 11 11 C 1.50958 * 108.02807 * 81.55077 * 9 8 6 12 12 C 1.53671 * 110.96499 * 194.29887 * 11 9 8 13 13 C 1.51891 * 106.89588 * 280.90875 * 12 11 9 14 14 N 1.29902 * 127.80789 * 245.11976 * 13 12 11 15 15 N 1.29034 * 109.22017 * 179.74693 * 14 13 12 16 16 C 1.30970 * 109.71056 * 0.06809 * 15 14 13 17 17 C 1.50699 * 126.61319 * 180.13084 * 16 15 14 18 18 N 1.46502 * 109.46897 * 269.96918 * 17 16 15 19 19 C 1.36938 * 119.99783 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00149 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00153 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99696 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00225 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47289 * 89.99883 * 23 21 19 25 25 H 1.48508 * 109.47091 * 210.00042 * 23 21 19 26 26 H 1.48498 * 109.47299 * 329.99776 * 23 21 19 27 27 N 1.34599 * 124.57306 * 65.07673 * 13 12 11 28 28 C 1.47496 * 125.03572 * 0.53000 * 27 13 12 29 29 C 1.50860 * 108.03000 * 208.45404 * 9 8 6 30 30 H 1.09001 * 109.47091 * 60.00619 * 1 2 3 31 31 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47103 * 299.99907 * 1 2 3 33 33 H 1.09005 * 109.47761 * 239.99871 * 2 1 3 34 34 H 1.09000 * 109.47436 * 120.00075 * 2 1 3 35 35 H 1.08996 * 109.46783 * 299.99412 * 5 3 2 36 36 H 1.08994 * 109.47175 * 59.99981 * 5 3 2 37 37 H 1.09001 * 109.46739 * 179.97438 * 5 3 2 38 38 H 0.97000 * 120.00317 * 0.28382 * 8 6 3 39 39 H 1.09001 * 109.17834 * 314.68256 * 11 9 8 40 40 H 1.09004 * 109.17708 * 73.96361 * 11 9 8 41 41 H 1.08998 * 109.96850 * 40.25184 * 12 11 9 42 42 H 1.08996 * 109.96852 * 161.56458 * 12 11 9 43 43 H 1.08993 * 109.47265 * 29.97253 * 17 16 15 44 44 H 1.09004 * 109.47413 * 149.97577 * 17 16 15 45 45 H 0.96999 * 120.00366 * 0.02562 * 18 17 16 46 46 H 0.97000 * 120.00263 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.93507 * 53.41700 * 28 27 13 48 48 H 1.08995 * 109.93159 * 174.55122 * 28 27 13 49 49 H 1.09005 * 109.14675 * 285.98516 * 29 9 8 50 50 H 1.08995 * 109.15280 * 45.14522 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 8 4.1451 0.3951 0.2038 8 7 4.2153 2.6116 0.1398 9 6 5.6758 2.6132 0.2541 10 1 5.9619 1.7830 0.8999 11 6 6.2522 2.3582 -1.1176 12 6 7.7426 1.9947 -1.0289 13 6 8.5040 3.2956 -0.8420 14 7 9.3515 3.8465 -1.6579 15 7 9.7809 4.9493 -1.1436 16 6 9.2200 5.1397 0.0245 17 6 9.4462 6.3069 0.9506 18 7 10.5540 6.0017 1.8594 19 6 10.9438 6.9208 2.7966 20 1 10.4343 7.8706 2.8661 21 6 11.9938 6.6319 3.6574 22 7 12.6150 5.4746 3.5724 23 14 12.5251 7.8853 4.9364 24 1 11.7627 7.6654 6.1916 25 1 13.9774 7.7323 5.2060 26 1 12.2576 9.2548 4.4283 27 7 8.4020 4.0919 0.2384 28 6 7.5480 3.8234 1.4106 29 6 6.0897 3.8959 0.9319 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0699 1.5875 -2.1491 36 1 0.5490 2.1252 -1.3969 37 1 1.9982 3.1543 -1.3071 38 1 3.7330 3.4508 0.0756 39 1 5.7105 1.5368 -1.5865 40 1 6.1387 3.2555 -1.7261 41 1 7.9152 1.3368 -0.1771 42 1 8.0618 1.5055 -1.9491 43 1 9.6902 7.1933 0.3651 44 1 8.5415 6.4918 1.5299 45 1 11.0118 5.1488 1.7967 46 1 13.3485 5.2725 4.1741 47 1 7.7607 2.8300 1.8056 48 1 7.7258 4.5748 2.1798 49 1 5.9844 4.7220 0.2287 50 1 5.4407 4.0727 1.7896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127943518.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:54 Heat of formation + Delta-G solvation = 14.074337 kcal Electronic energy + Delta-G solvation = -29352.586880 eV Core-core repulsion = 25414.869300 eV Total energy + Delta-G solvation = -3937.717579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.35283 -41.24343 -38.69116 -36.93075 -36.32977 -35.71738 -34.61198 -33.27879 -32.31603 -30.95068 -30.35492 -27.89437 -27.10210 -25.94640 -25.40577 -24.72909 -22.93200 -22.33205 -21.64639 -21.26207 -20.61517 -19.40010 -18.32954 -18.04324 -17.46948 -17.02930 -16.60373 -16.46908 -16.10030 -15.84459 -15.62408 -15.50559 -15.11596 -14.93390 -14.49838 -14.37813 -14.32944 -14.02377 -13.87283 -13.63552 -13.39782 -13.18588 -12.95596 -12.89510 -12.77590 -12.70301 -12.55403 -12.50440 -12.45523 -12.18639 -12.11751 -11.90731 -11.89504 -11.67267 -11.56820 -11.36436 -11.19217 -11.01165 -10.66896 -10.21288 -10.07671 -9.12161 -7.97317 -5.30255 0.80570 1.48971 1.51788 1.52274 1.60558 1.66860 1.78778 2.10823 2.56357 3.13937 3.35147 3.37774 3.45276 3.60748 3.69945 3.78042 3.86375 3.92653 4.00858 4.02516 4.06316 4.19219 4.26337 4.29608 4.41460 4.49753 4.56136 4.57592 4.64097 4.64932 4.75466 4.81659 4.86287 4.96472 5.00297 5.01254 5.05193 5.06402 5.09458 5.14802 5.18601 5.24308 5.39008 5.45569 5.48282 5.52591 5.91678 6.19511 6.56118 7.27436 7.27975 7.71529 7.92470 8.19636 9.25977 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018599 B = 0.002301 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.130404 B =12163.228602 C =12958.105822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.106 4.106 3 C -0.105 4.105 4 H 0.119 0.881 5 C -0.143 4.143 6 C 0.514 3.486 7 O -0.580 6.580 8 N -0.716 5.716 9 C 0.146 3.854 10 H 0.077 0.923 11 C -0.113 4.113 12 C -0.022 4.022 13 C 0.178 3.822 14 N -0.338 5.338 15 N -0.336 5.336 16 C 0.181 3.819 17 C 0.242 3.758 18 N -0.737 5.737 19 C -0.244 4.244 20 H 0.090 0.910 21 C -0.074 4.074 22 N -0.971 5.971 23 Si 0.981 3.019 24 H -0.282 1.282 25 H -0.302 1.302 26 H -0.266 1.266 27 N -0.454 5.454 28 C 0.101 3.899 29 C -0.128 4.128 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.415 0.585 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.370 0.630 46 H 0.251 0.749 47 H 0.107 0.893 48 H 0.114 0.886 49 H 0.080 0.920 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.338 -7.716 -6.100 31.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C -0.126 4.126 4 H 0.137 0.863 5 C -0.201 4.201 6 C 0.302 3.698 7 O -0.459 6.459 8 N -0.368 5.368 9 C 0.041 3.959 10 H 0.095 0.905 11 C -0.152 4.152 12 C -0.062 4.062 13 C -0.091 4.091 14 N -0.178 5.178 15 N -0.176 5.176 16 C -0.088 4.088 17 C 0.113 3.887 18 N -0.380 5.380 19 C -0.375 4.375 20 H 0.108 0.892 21 C -0.267 4.267 22 N -0.621 5.621 23 Si 0.809 3.191 24 H -0.208 1.208 25 H -0.229 1.229 26 H -0.190 1.190 27 N -0.144 5.144 28 C -0.021 4.021 29 C -0.166 4.166 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.252 0.748 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.128 0.872 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.201 0.799 46 H 0.060 0.940 47 H 0.126 0.874 48 H 0.132 0.868 49 H 0.098 0.902 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -29.085 -8.032 -7.167 31.013 hybrid contribution 0.459 0.247 1.551 1.636 sum -28.626 -7.784 -5.616 30.193 Atomic orbital electron populations 1.21817 0.93815 1.02261 1.02793 1.21318 0.96743 0.94474 1.01899 1.21393 0.89581 0.99391 1.02280 0.86331 1.21842 1.03410 1.00466 0.94354 1.21269 0.91154 0.83109 0.74318 1.90705 1.71349 1.32932 1.50911 1.46117 1.06673 1.09361 1.74668 1.20228 0.80619 0.98734 0.96288 0.90457 1.21575 0.93362 1.02723 0.97552 1.20595 0.92508 0.87481 1.05606 1.25323 0.99796 0.98163 0.85849 1.74098 1.12565 1.04354 1.26740 1.74455 1.22655 1.12179 1.08319 1.24950 0.93694 0.93840 0.96344 1.19090 0.92449 0.89088 0.88040 1.42449 1.38010 1.19067 1.38514 1.19649 1.12297 0.97481 1.08119 0.89228 1.25674 0.99136 0.99231 1.02634 1.69859 1.26017 1.24434 1.41795 0.85039 0.76429 0.78713 0.78905 1.20823 1.22860 1.19050 1.46221 1.33710 1.16906 1.17579 1.22669 0.88648 1.05418 0.85326 1.21833 0.94224 0.97521 1.02995 0.91361 0.92608 0.91791 0.92899 0.92952 0.93228 0.89644 0.90809 0.74809 0.89802 0.91600 0.88104 0.87175 0.93045 0.91273 0.79852 0.94021 0.87446 0.86776 0.90166 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 71.98 0.70 -0.41 16 2 C -0.11 -1.27 4.75 30.59 0.15 -1.13 16 3 C -0.11 -0.95 2.73 -11.54 -0.03 -0.98 16 4 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 5 C -0.14 -0.83 8.84 71.98 0.64 -0.20 16 6 C 0.51 7.75 6.81 87.66 0.60 8.34 16 7 O -0.58 -14.02 15.24 -3.04 -0.05 -14.06 16 8 N -0.72 -7.69 4.83 -449.04 -2.17 -9.86 16 9 C 0.15 2.10 1.91 43.63 0.08 2.18 16 10 H 0.08 1.35 7.01 -2.39 -0.02 1.33 16 11 C -0.11 -1.94 5.12 30.16 0.15 -1.78 16 12 C -0.02 -0.46 6.02 30.46 0.18 -0.28 16 13 C 0.18 5.50 7.02 138.83 0.98 6.47 16 14 N -0.34 -13.52 12.23 -49.99 -0.61 -14.13 16 15 N -0.34 -14.78 12.24 -50.43 -0.62 -15.40 16 16 C 0.18 6.94 7.45 138.12 1.03 7.97 16 17 C 0.24 9.54 6.48 85.63 0.55 10.09 16 18 N -0.74 -37.00 5.59 -347.17 -1.94 -38.94 16 19 C -0.24 -13.08 9.99 84.03 0.84 -12.24 16 20 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 21 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 22 N -0.97 -59.48 13.06 21.65 0.28 -59.20 16 23 Si 0.98 44.91 29.55 68.60 2.03 46.94 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 N -0.45 -13.61 2.72 -500.59 -1.36 -14.97 16 28 C 0.10 2.09 6.47 86.41 0.56 2.65 16 29 C -0.13 -1.66 5.07 30.12 0.15 -1.51 16 30 H 0.07 0.37 6.57 -2.39 -0.02 0.35 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.05 0.81 7.96 -2.39 -0.02 0.79 16 35 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.08 0.28 6.56 -2.39 -0.02 0.27 16 37 H 0.07 0.24 7.56 -2.39 -0.02 0.22 16 38 H 0.41 2.07 7.98 -92.71 -0.74 1.33 16 39 H 0.08 1.50 7.54 -2.39 -0.02 1.48 16 40 H 0.07 1.21 7.91 -2.38 -0.02 1.19 16 41 H 0.10 1.94 7.89 -2.39 -0.02 1.92 16 42 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.07 2.30 7.46 -2.38 -0.02 2.28 16 45 H 0.37 20.84 7.66 -92.71 -0.71 20.13 16 46 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 47 H 0.11 2.03 7.87 -2.39 -0.02 2.02 16 48 H 0.11 2.48 7.16 -2.39 -0.02 2.47 16 49 H 0.08 1.12 8.08 -2.38 -0.02 1.10 16 50 H 0.12 0.99 8.12 -2.39 -0.02 0.97 16 Total: -1.00 -78.97 397.10 2.11 -76.86 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -0.49 Total: 27.31 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 7.04 Total: 15.46 kcal Atomic # 7 Polarization: -146.08 SS G_CDS: -6.42 Total: -152.50 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.05 Total: -14.06 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -78.97 2.11 -76.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127943518.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.931 kcal (2) G-P(sol) polarization free energy of solvation -78.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds