Wall clock time and date at job start Tue Mar 31 2020 18:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47328 * 2 1 4 4 H 1.09004 * 109.47716 * 55.79811 * 3 2 1 5 5 C 1.50699 * 109.47502 * 175.80415 * 3 2 1 6 6 O 1.21280 * 120.00384 * 102.19063 * 5 3 2 7 7 N 1.34783 * 119.99661 * 282.18682 * 5 3 2 8 8 C 1.46492 * 119.99737 * 180.02562 * 7 5 3 9 9 C 1.50701 * 109.47058 * 180.02562 * 8 7 5 10 10 C 1.40072 * 126.12236 * 259.68648 * 9 8 7 11 11 N 1.31011 * 108.25388 * 179.97438 * 10 9 8 12 12 N 1.39750 * 108.17674 * 0.53508 * 11 10 9 13 13 C 1.34640 * 126.12886 * 79.99642 * 9 8 7 14 14 C 1.51041 * 127.90506 * 359.44727 * 13 9 8 15 15 N 1.47504 * 106.99354 * 169.57017 * 14 13 9 16 16 C 1.36943 * 121.00629 * 222.96924 * 15 14 13 17 17 H 1.08005 * 119.99141 * 152.84246 * 16 15 14 18 18 C 1.38805 * 120.00548 * 332.84491 * 16 15 14 19 19 N 1.31626 * 119.99842 * 347.44497 * 18 16 15 20 20 Si 1.86800 * 120.00396 * 167.44387 * 18 16 15 21 21 H 1.48504 * 109.46654 * 59.99706 * 20 18 16 22 22 H 1.48500 * 109.47030 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46830 * 300.00275 * 20 18 16 24 24 C 1.47078 * 117.98039 * 42.97182 * 15 14 13 25 25 C 1.46549 * 127.32506 * 179.23698 * 12 11 10 26 26 N 1.46904 * 109.47169 * 295.80139 * 3 2 1 27 27 C 1.46891 * 111.00389 * 185.14442 * 26 3 2 28 28 C 1.46905 * 110.99724 * 309.10132 * 26 3 2 29 29 H 1.09001 * 109.47209 * 55.89286 * 1 2 3 30 30 H 1.09000 * 109.47713 * 295.89237 * 1 2 3 31 31 H 1.09005 * 109.47209 * 175.89011 * 1 2 3 32 32 H 1.09003 * 109.47169 * 119.99373 * 2 1 3 33 33 H 1.09001 * 109.47622 * 239.99575 * 2 1 3 34 34 H 0.96995 * 119.99895 * 359.97438 * 7 5 3 35 35 H 1.08999 * 109.47105 * 299.99784 * 8 7 5 36 36 H 1.08999 * 109.47775 * 59.99836 * 8 7 5 37 37 H 1.07999 * 125.87645 * 0.09053 * 10 9 8 38 38 H 1.09000 * 109.94987 * 288.93572 * 14 13 9 39 39 H 1.08995 * 109.95004 * 50.19529 * 14 13 9 40 40 H 0.96997 * 119.99665 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.51681 * 176.51696 * 24 15 14 42 42 H 1.09006 * 109.50959 * 56.36997 * 24 15 14 43 43 H 1.09004 * 109.50355 * 281.39170 * 25 12 11 44 44 H 1.09003 * 109.51096 * 41.52517 * 25 12 11 45 45 H 1.09005 * 109.47433 * 66.83224 * 27 26 3 46 46 H 1.09007 * 109.47322 * 186.82976 * 27 26 3 47 47 H 1.09000 * 109.47563 * 306.83175 * 27 26 3 48 48 H 1.08996 * 109.47010 * 66.00305 * 28 26 3 49 49 H 1.09001 * 109.46731 * 186.00491 * 28 26 3 50 50 H 1.08994 * 109.46857 * 306.00191 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6165 1.9777 0.8499 5 6 3.5434 1.4438 0.1040 6 8 4.2194 1.6410 -0.8835 7 7 4.1367 1.2258 1.2944 8 6 5.5981 1.2277 1.3956 9 6 6.0032 0.9614 2.8225 10 6 6.4044 1.9217 3.7599 11 7 6.6754 1.3085 4.8854 12 7 6.4674 -0.0606 4.6969 13 6 6.0499 -0.2428 3.4229 14 6 5.7046 -1.5888 2.8310 15 7 6.1560 -2.6115 3.7933 16 6 6.8000 -3.7434 3.3697 17 1 7.4912 -4.2495 4.0274 18 6 6.5644 -4.2402 2.0952 19 7 5.5540 -3.7824 1.3867 20 14 7.6813 -5.5586 1.3853 21 1 7.6392 -6.7628 2.2533 22 1 7.2198 -5.9156 0.0197 23 1 9.0730 -5.0449 1.3186 24 6 5.8933 -2.3787 5.2216 25 6 6.6605 -1.1320 5.6779 26 7 1.6349 2.1051 -1.2469 27 6 2.2101 3.4536 -1.3375 28 6 2.0029 1.2961 -2.4166 29 1 -0.3634 0.5763 -0.8509 30 1 -0.3634 0.4487 0.9245 31 1 -0.3634 -1.0251 -0.0737 32 1 1.8933 -0.5137 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 3.5960 1.0685 2.0841 35 1 6.0079 0.4502 0.7508 36 1 5.9828 2.1986 1.0834 37 1 6.4762 2.9852 3.5855 38 1 4.6272 -1.6656 2.6849 39 1 6.2202 -1.7200 1.8797 40 1 5.3891 -4.1298 0.4962 41 1 6.2260 -3.2416 5.7984 42 1 4.8248 -2.2272 5.3753 43 1 7.7224 -1.3649 5.7582 44 1 6.2836 -0.8093 6.6485 45 1 3.2932 3.3808 -1.4368 46 1 1.7992 3.9664 -2.2073 47 1 1.9650 4.0146 -0.4357 48 1 1.4264 0.3711 -2.4145 49 1 1.7890 1.8556 -3.3272 50 1 3.0665 1.0614 -2.3758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128499626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:24 Heat of formation + Delta-G solvation = 76.577412 kcal Electronic energy + Delta-G solvation = -30500.962619 eV Core-core repulsion = 26565.955377 eV Total energy + Delta-G solvation = -3935.007243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.04277 -40.22134 -36.89034 -36.30359 -34.80672 -33.18858 -32.76092 -31.30725 -30.24692 -29.15645 -27.67995 -27.27283 -25.99179 -24.74514 -23.53954 -23.11830 -21.84678 -21.35183 -20.22644 -19.68005 -18.41418 -17.24327 -16.74654 -16.47253 -15.95589 -15.44889 -15.28583 -15.02364 -14.76106 -14.60080 -14.43318 -13.89875 -13.73768 -13.49847 -13.36166 -13.23035 -13.03261 -12.87160 -12.49636 -12.33651 -11.95795 -11.80362 -11.71353 -11.66620 -11.61746 -11.46750 -11.28707 -11.01333 -10.93730 -10.88911 -10.77460 -10.68485 -10.24801 -10.23519 -10.14871 -10.07697 -8.93337 -8.76493 -8.59059 -8.21680 -7.84383 -7.07442 -6.04703 -3.50810 2.38846 2.76808 2.91356 2.98573 3.26948 3.34141 3.34273 3.74012 3.96075 4.28544 4.82040 4.90789 4.93575 5.04347 5.04704 5.17241 5.21443 5.34681 5.40632 5.46857 5.51943 5.56089 5.57994 5.59654 5.67081 5.69293 5.80134 5.82562 5.89684 6.00408 6.04843 6.09674 6.13237 6.20057 6.22059 6.34023 6.38045 6.39367 6.50649 6.71633 6.87414 6.90956 6.99443 7.05004 7.10731 7.54009 7.57438 7.75148 8.07981 8.20181 8.41677 8.89141 9.50661 10.04639 11.06139 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.003994 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.383856 B = 7009.611345 C = 8636.997373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C 0.066 3.934 4 H 0.101 0.899 5 C 0.487 3.513 6 O -0.546 6.546 7 N -0.714 5.714 8 C 0.209 3.791 9 C -0.289 4.289 10 C 0.056 3.944 11 N -0.318 5.318 12 N -0.357 5.357 13 C 0.119 3.881 14 C 0.233 3.767 15 N -0.596 5.596 16 C -0.267 4.267 17 H 0.072 0.928 18 C 0.012 3.988 19 N -0.903 5.903 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.282 1.282 24 C 0.129 3.871 25 C 0.113 3.887 26 N -0.515 5.515 27 C 0.008 3.992 28 C 0.002 3.998 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.399 0.601 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.175 0.825 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.260 0.740 41 H 0.085 0.915 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.059 0.941 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.617 10.133 0.075 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.047 4.047 4 H 0.119 0.881 5 C 0.272 3.728 6 O -0.424 6.424 7 N -0.365 5.365 8 C 0.085 3.915 9 C -0.301 4.301 10 C -0.131 4.131 11 N -0.138 5.138 12 N -0.139 5.139 13 C -0.012 4.012 14 C 0.106 3.894 15 N -0.318 5.318 16 C -0.396 4.396 17 H 0.089 0.911 18 C -0.188 4.188 19 N -0.546 5.546 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.208 1.208 24 C 0.001 3.999 25 C -0.010 4.010 26 N -0.237 5.237 27 C -0.140 4.140 28 C -0.146 4.146 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.192 0.808 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.078 0.922 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.269 10.263 0.535 12.588 hybrid contribution 1.065 -0.789 -0.678 1.489 sum -6.204 9.474 -0.143 11.326 Atomic orbital electron populations 1.21668 0.94433 1.01478 1.02370 1.21598 0.97234 0.92995 1.03691 1.21971 0.89652 0.97885 0.95180 0.88086 1.21909 0.91547 0.76180 0.83202 1.90596 1.66149 1.49772 1.35917 1.46399 1.08137 1.71487 1.10475 1.19294 0.79205 1.01339 0.91641 1.19432 1.20651 0.92111 0.97938 1.23664 0.99415 0.99499 0.90522 1.77172 1.25479 0.87812 1.23314 1.48500 1.50772 1.04722 1.09864 1.22597 0.94011 0.99120 0.85503 1.19885 0.98608 0.77430 0.93449 1.44156 1.67896 1.20280 0.99476 1.19099 1.18460 1.02438 0.99563 0.91074 1.25101 0.96761 0.98332 0.98595 1.69905 1.27579 1.45074 1.12027 0.86266 0.80291 0.81299 0.78300 1.20636 1.21316 1.20794 1.21297 0.96612 0.93898 0.88123 1.22573 1.02376 0.85952 0.90137 1.62523 1.56872 1.02938 1.01389 1.22567 0.99952 0.89671 1.01798 1.22687 1.02106 0.97759 0.92017 0.91518 0.92942 0.92850 0.90628 0.90793 0.76690 0.90983 0.91536 0.80823 0.92544 0.87639 0.92990 0.89713 0.94584 0.90598 0.90200 0.92784 0.91673 0.92195 0.91525 0.92172 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.75 37.15 0.36 -1.08 16 2 C -0.12 -1.39 4.91 -26.74 -0.13 -1.52 16 3 C 0.07 0.79 2.32 -68.86 -0.16 0.63 16 4 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 5 C 0.49 7.09 6.29 -10.98 -0.07 7.02 16 6 O -0.55 -9.56 11.90 5.56 0.07 -9.49 16 7 N -0.71 -10.08 5.55 -61.48 -0.34 -10.42 16 8 C 0.21 3.30 5.95 -5.20 -0.03 3.27 16 9 C -0.29 -4.91 5.46 -105.21 -0.57 -5.49 16 10 C 0.06 0.90 11.97 -17.21 -0.21 0.69 16 11 N -0.32 -5.80 12.61 30.70 0.39 -5.41 16 12 N -0.36 -6.75 4.03 -56.89 -0.23 -6.98 16 13 C 0.12 2.32 6.71 -82.17 -0.55 1.77 16 14 C 0.23 5.13 5.07 -4.48 -0.02 5.11 16 15 N -0.60 -13.62 3.00 -172.92 -0.52 -14.14 16 16 C -0.27 -6.73 9.65 -15.06 -0.15 -6.88 16 17 H 0.07 1.75 7.86 -52.48 -0.41 1.33 16 18 C 0.01 0.31 5.05 -17.43 -0.09 0.22 16 19 N -0.90 -24.09 11.12 55.49 0.62 -23.47 16 20 Si 0.91 20.57 29.57 -169.99 -5.03 15.55 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.13 2.37 6.50 -3.56 -0.02 2.35 16 25 C 0.11 1.90 7.45 -3.84 -0.03 1.87 16 26 N -0.51 -6.22 4.43 -244.58 -1.08 -7.30 16 27 C 0.01 0.10 9.01 60.06 0.54 0.64 16 28 C 0.00 0.03 8.54 60.07 0.51 0.54 16 29 H 0.07 0.69 7.56 -51.93 -0.39 0.29 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.97 6.19 -51.93 -0.32 0.65 16 34 H 0.40 5.12 8.46 -40.82 -0.35 4.77 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.11 2.64 6.60 -51.93 -0.34 2.29 16 40 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.08 1.44 7.94 -51.93 -0.41 1.02 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.75 5.82 -51.93 -0.30 0.44 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 48 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 49 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 50 H 0.06 0.98 5.51 -51.93 -0.29 0.70 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -29.30 392.59 -9.02 -38.33 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.19 Total: 8.28 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -0.61 Total: 9.13 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -1.17 Total: -67.71 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.30 -9.02 -38.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128499626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.905 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds