Wall clock time and date at job start Tue Mar 31 2020 18:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47328 * 2 1 4 4 H 1.09004 * 109.47716 * 55.79811 * 3 2 1 5 5 C 1.50699 * 109.47502 * 175.80415 * 3 2 1 6 6 O 1.21280 * 120.00384 * 102.19063 * 5 3 2 7 7 N 1.34783 * 119.99661 * 282.18682 * 5 3 2 8 8 C 1.46492 * 119.99737 * 180.02562 * 7 5 3 9 9 C 1.50701 * 109.47058 * 180.02562 * 8 7 5 10 10 C 1.40072 * 126.12236 * 259.68648 * 9 8 7 11 11 N 1.31011 * 108.25388 * 179.97438 * 10 9 8 12 12 N 1.39750 * 108.17674 * 0.53508 * 11 10 9 13 13 C 1.34640 * 126.12886 * 79.99642 * 9 8 7 14 14 C 1.51041 * 127.90506 * 359.44727 * 13 9 8 15 15 N 1.47504 * 106.99354 * 169.57017 * 14 13 9 16 16 C 1.36943 * 121.00629 * 222.96924 * 15 14 13 17 17 H 1.08005 * 119.99141 * 152.84246 * 16 15 14 18 18 C 1.38805 * 120.00548 * 332.84491 * 16 15 14 19 19 N 1.31626 * 119.99842 * 347.44497 * 18 16 15 20 20 Si 1.86800 * 120.00396 * 167.44387 * 18 16 15 21 21 H 1.48504 * 109.46654 * 59.99706 * 20 18 16 22 22 H 1.48500 * 109.47030 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46830 * 300.00275 * 20 18 16 24 24 C 1.47078 * 117.98039 * 42.97182 * 15 14 13 25 25 C 1.46549 * 127.32506 * 179.23698 * 12 11 10 26 26 N 1.46904 * 109.47169 * 295.80139 * 3 2 1 27 27 C 1.46891 * 111.00389 * 185.14442 * 26 3 2 28 28 C 1.46905 * 110.99724 * 309.10132 * 26 3 2 29 29 H 1.09001 * 109.47209 * 55.89286 * 1 2 3 30 30 H 1.09000 * 109.47713 * 295.89237 * 1 2 3 31 31 H 1.09005 * 109.47209 * 175.89011 * 1 2 3 32 32 H 1.09003 * 109.47169 * 119.99373 * 2 1 3 33 33 H 1.09001 * 109.47622 * 239.99575 * 2 1 3 34 34 H 0.96995 * 119.99895 * 359.97438 * 7 5 3 35 35 H 1.08999 * 109.47105 * 299.99784 * 8 7 5 36 36 H 1.08999 * 109.47775 * 59.99836 * 8 7 5 37 37 H 1.07999 * 125.87645 * 0.09053 * 10 9 8 38 38 H 1.09000 * 109.94987 * 288.93572 * 14 13 9 39 39 H 1.08995 * 109.95004 * 50.19529 * 14 13 9 40 40 H 0.96997 * 119.99665 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.51681 * 176.51696 * 24 15 14 42 42 H 1.09006 * 109.50959 * 56.36997 * 24 15 14 43 43 H 1.09004 * 109.50355 * 281.39170 * 25 12 11 44 44 H 1.09003 * 109.51096 * 41.52517 * 25 12 11 45 45 H 1.09005 * 109.47433 * 66.83224 * 27 26 3 46 46 H 1.09007 * 109.47322 * 186.82976 * 27 26 3 47 47 H 1.09000 * 109.47563 * 306.83175 * 27 26 3 48 48 H 1.08996 * 109.47010 * 66.00305 * 28 26 3 49 49 H 1.09001 * 109.46731 * 186.00491 * 28 26 3 50 50 H 1.08994 * 109.46857 * 306.00191 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6165 1.9777 0.8499 5 6 3.5434 1.4438 0.1040 6 8 4.2194 1.6410 -0.8835 7 7 4.1367 1.2258 1.2944 8 6 5.5981 1.2277 1.3956 9 6 6.0032 0.9614 2.8225 10 6 6.4044 1.9217 3.7599 11 7 6.6754 1.3085 4.8854 12 7 6.4674 -0.0606 4.6969 13 6 6.0499 -0.2428 3.4229 14 6 5.7046 -1.5888 2.8310 15 7 6.1560 -2.6115 3.7933 16 6 6.8000 -3.7434 3.3697 17 1 7.4912 -4.2495 4.0274 18 6 6.5644 -4.2402 2.0952 19 7 5.5540 -3.7824 1.3867 20 14 7.6813 -5.5586 1.3853 21 1 7.6392 -6.7628 2.2533 22 1 7.2198 -5.9156 0.0197 23 1 9.0730 -5.0449 1.3186 24 6 5.8933 -2.3787 5.2216 25 6 6.6605 -1.1320 5.6779 26 7 1.6349 2.1051 -1.2469 27 6 2.2101 3.4536 -1.3375 28 6 2.0029 1.2961 -2.4166 29 1 -0.3634 0.5763 -0.8509 30 1 -0.3634 0.4487 0.9245 31 1 -0.3634 -1.0251 -0.0737 32 1 1.8933 -0.5137 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 3.5960 1.0685 2.0841 35 1 6.0079 0.4502 0.7508 36 1 5.9828 2.1986 1.0834 37 1 6.4762 2.9852 3.5855 38 1 4.6272 -1.6656 2.6849 39 1 6.2202 -1.7200 1.8797 40 1 5.3891 -4.1298 0.4962 41 1 6.2260 -3.2416 5.7984 42 1 4.8248 -2.2272 5.3753 43 1 7.7224 -1.3649 5.7582 44 1 6.2836 -0.8093 6.6485 45 1 3.2932 3.3808 -1.4368 46 1 1.7992 3.9664 -2.2073 47 1 1.9650 4.0146 -0.4357 48 1 1.4264 0.3711 -2.4145 49 1 1.7890 1.8556 -3.3272 50 1 3.0665 1.0614 -2.3758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128499626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:23 Heat of formation + Delta-G solvation = 56.795081 kcal Electronic energy + Delta-G solvation = -30501.820446 eV Core-core repulsion = 26565.955377 eV Total energy + Delta-G solvation = -3935.865069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.45560 -41.37195 -38.07503 -37.84613 -36.10283 -34.69308 -33.88070 -32.86716 -31.83038 -30.52739 -28.81860 -28.25630 -27.66607 -26.13077 -25.13167 -24.09728 -23.35704 -22.47141 -21.61888 -20.84762 -19.93180 -18.54384 -18.41076 -17.70156 -17.30181 -16.80748 -16.58436 -16.29150 -16.19743 -15.77544 -15.65190 -15.47512 -15.24491 -14.96977 -14.73825 -14.49176 -14.22101 -13.99483 -13.95489 -13.35235 -13.28952 -13.15599 -13.00289 -12.89212 -12.73935 -12.70486 -12.62267 -12.58413 -12.41747 -12.38613 -12.06711 -11.92970 -11.88185 -11.64663 -11.62192 -11.25499 -10.78020 -10.08518 -10.01786 -9.51467 -9.06789 -8.91136 -7.99773 -5.46803 0.91736 1.45006 1.47793 1.52904 1.57050 1.60238 1.65436 2.43518 2.52972 2.98090 3.20179 3.42590 3.58996 3.78063 3.83157 3.89236 4.09403 4.13462 4.17715 4.22728 4.29595 4.36543 4.44413 4.50402 4.60753 4.67498 4.70695 4.73290 4.77480 4.86362 4.88314 4.91861 4.95685 5.00293 5.07669 5.11345 5.20380 5.22773 5.26397 5.34970 5.50692 5.52238 5.57335 5.73812 5.91881 6.00821 6.07721 6.21127 6.59368 6.78799 6.98644 7.25535 7.63880 8.16365 9.09040 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.003994 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.383856 B = 7009.611345 C = 8636.997373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 C 0.072 3.928 4 H 0.126 0.874 5 C 0.484 3.516 6 O -0.577 6.577 7 N -0.708 5.708 8 C 0.218 3.782 9 C -0.276 4.276 10 C 0.067 3.933 11 N -0.326 5.326 12 N -0.366 5.366 13 C 0.096 3.904 14 C 0.253 3.747 15 N -0.615 5.615 16 C -0.272 4.272 17 H 0.077 0.923 18 C -0.037 4.037 19 N -0.929 5.929 20 Si 0.965 3.035 21 H -0.270 1.270 22 H -0.295 1.295 23 H -0.283 1.283 24 C 0.129 3.871 25 C 0.117 3.883 26 N -0.509 5.509 27 C 0.010 3.990 28 C 0.006 3.994 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.407 0.593 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.214 0.786 38 H 0.037 0.963 39 H 0.067 0.933 40 H 0.253 0.747 41 H 0.099 0.901 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.029 0.971 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.267 11.611 1.512 14.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.153 4.153 3 C -0.040 4.040 4 H 0.144 0.856 5 C 0.270 3.730 6 O -0.457 6.457 7 N -0.359 5.359 8 C 0.093 3.907 9 C -0.288 4.288 10 C -0.120 4.120 11 N -0.146 5.146 12 N -0.148 5.148 13 C -0.036 4.036 14 C 0.126 3.874 15 N -0.338 5.338 16 C -0.402 4.402 17 H 0.094 0.906 18 C -0.234 4.234 19 N -0.573 5.573 20 Si 0.793 3.207 21 H -0.196 1.196 22 H -0.222 1.222 23 H -0.209 1.209 24 C 0.002 3.998 25 C -0.006 4.006 26 N -0.231 5.231 27 C -0.138 4.138 28 C -0.142 4.142 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.242 0.758 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.230 0.770 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.117 0.883 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.130 0.870 45 H 0.048 0.952 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.926 11.740 2.027 14.309 hybrid contribution 1.281 -1.199 -1.099 2.070 sum -6.645 10.541 0.928 12.496 Atomic orbital electron populations 1.21610 0.92606 1.01828 1.03102 1.21565 0.98699 0.92642 1.02391 1.22055 0.87540 0.98286 0.96131 0.85638 1.22472 0.92692 0.75261 0.82579 1.90597 1.67121 1.51107 1.36904 1.46301 1.07455 1.71217 1.10909 1.19105 0.80239 1.00851 0.90493 1.19538 1.19363 0.91683 0.98195 1.24232 0.97604 1.00967 0.89180 1.77166 1.25901 0.87353 1.24225 1.48685 1.50984 1.05410 1.09720 1.22228 0.96313 0.98479 0.86547 1.19303 0.96823 0.79098 0.92193 1.44386 1.68065 1.19949 1.01447 1.19430 1.18289 1.02744 0.99691 0.90564 1.25762 0.98008 1.00433 0.99187 1.70054 1.29089 1.46346 1.11817 0.85387 0.78508 0.79579 0.77244 1.19560 1.22157 1.20878 1.21451 0.97242 0.95451 0.85674 1.22560 1.02191 0.84850 0.90994 1.62591 1.56310 1.03138 1.01104 1.22583 0.98382 0.89517 1.03290 1.22628 1.00194 0.98428 0.92938 0.91412 0.91573 0.92652 0.91487 0.92638 0.75757 0.94218 0.90118 0.76950 0.94549 0.91471 0.93834 0.88311 0.94094 0.90588 0.86988 0.95240 0.90258 0.90636 0.90998 0.90861 0.94697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.75 71.98 0.70 -1.82 16 2 C -0.11 -2.70 4.91 30.59 0.15 -2.55 16 3 C 0.07 1.67 2.32 44.17 0.10 1.77 16 4 H 0.13 2.31 8.14 -2.38 -0.02 2.30 16 5 C 0.48 14.17 6.29 87.66 0.55 14.72 16 6 O -0.58 -20.80 11.90 -3.03 -0.04 -20.83 16 7 N -0.71 -19.92 5.55 -466.80 -2.59 -22.51 16 8 C 0.22 6.91 5.95 85.63 0.51 7.42 16 9 C -0.28 -9.14 5.46 -20.24 -0.11 -9.25 16 10 C 0.07 1.96 11.97 85.26 1.02 2.98 16 11 N -0.33 -11.09 12.61 -56.80 -0.72 -11.80 16 12 N -0.37 -13.30 4.03 -333.92 -1.35 -14.65 16 13 C 0.10 3.71 6.71 41.31 0.28 3.99 16 14 C 0.25 11.54 5.07 85.55 0.43 11.97 16 15 N -0.62 -28.47 3.00 -701.00 -2.10 -30.57 16 16 C -0.27 -13.88 9.65 84.03 0.81 -13.07 16 17 H 0.08 3.72 7.86 -2.91 -0.02 3.70 16 18 C -0.04 -1.96 5.05 84.86 0.43 -1.53 16 19 N -0.93 -51.53 11.12 21.65 0.24 -51.28 16 20 Si 0.96 43.03 29.57 68.60 2.03 45.06 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 C 0.13 4.60 6.50 86.38 0.56 5.16 16 25 C 0.12 3.69 7.45 86.48 0.64 4.34 16 26 N -0.51 -11.70 4.43 -927.73 -4.11 -15.81 16 27 C 0.01 0.22 9.01 127.69 1.15 1.37 16 28 C 0.01 0.15 8.54 127.69 1.09 1.24 16 29 H 0.07 1.27 7.56 -2.39 -0.02 1.25 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.50 6.19 -2.39 -0.01 1.49 16 34 H 0.41 10.18 8.46 -92.71 -0.78 9.39 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.21 4.45 8.06 -2.91 -0.02 4.42 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 3.56 6.60 -2.39 -0.02 3.55 16 40 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 41 H 0.10 3.20 7.94 -2.39 -0.02 3.19 16 42 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 44 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 45 H 0.03 0.80 5.82 -2.38 -0.01 0.78 16 46 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 47 H 0.07 1.39 8.11 -2.39 -0.02 1.37 16 48 H 0.07 1.68 6.36 -2.39 -0.02 1.66 16 49 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 50 H 0.03 1.09 5.51 -2.39 -0.01 1.08 16 Total: -1.00 -64.60 392.59 -0.16 -64.76 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.16 Total: 30.89 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: 8.32 Total: 26.77 kcal Atomic # 7 Polarization: -136.01 SS G_CDS: -10.63 Total: -146.63 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.04 Total: -20.83 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -64.60 -0.16 -64.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128499626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.554 kcal (2) G-P(sol) polarization free energy of solvation -64.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds