Wall clock time and date at job start Tue Mar 31 2020 19:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46852 * 2 1 4 4 N 1.46904 * 109.47236 * 179.97438 * 3 2 1 5 5 C 1.46901 * 110.99588 * 293.95559 * 4 3 2 6 6 C 1.46899 * 110.99892 * 169.99964 * 4 3 2 7 7 C 1.50702 * 109.46611 * 190.00115 * 6 4 3 8 8 O 1.21279 * 120.00343 * 0.02562 * 7 6 4 9 9 N 1.34778 * 119.99604 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99861 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47033 * 180.02562 * 10 9 7 12 12 C 1.40071 * 126.12777 * 259.87623 * 11 10 9 13 13 N 1.31008 * 108.25933 * 179.83696 * 12 11 10 14 14 N 1.39752 * 108.17587 * 0.36260 * 13 12 11 15 15 C 1.34642 * 126.12436 * 80.00440 * 11 10 9 16 16 C 1.51035 * 127.91038 * 359.68600 * 15 11 10 17 17 N 1.47502 * 107.00120 * 169.72279 * 16 15 11 18 18 C 1.36940 * 121.01057 * 222.89486 * 17 16 15 19 19 H 1.08000 * 119.99632 * 155.91392 * 18 17 16 20 20 C 1.38810 * 120.00291 * 335.92287 * 18 17 16 21 21 N 1.31616 * 119.99791 * 344.44867 * 20 18 17 22 22 Si 1.86801 * 120.00237 * 164.45215 * 20 18 17 23 23 H 1.48499 * 109.46896 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46773 * 119.99548 * 22 20 18 25 25 H 1.48494 * 109.47008 * 239.99575 * 22 20 18 26 26 C 1.47090 * 117.97851 * 42.91837 * 17 16 15 27 27 C 1.46544 * 127.31949 * 179.45101 * 14 13 12 28 28 H 1.09009 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47761 * 299.99541 * 1 2 3 30 30 H 1.09002 * 109.47342 * 60.00131 * 1 2 3 31 31 H 1.08991 * 109.47565 * 240.00200 * 2 1 3 32 32 H 1.09002 * 109.47342 * 119.99868 * 2 1 3 33 33 H 1.09002 * 109.47101 * 60.00253 * 3 2 1 34 34 H 1.09002 * 109.47040 * 300.00053 * 3 2 1 35 35 H 1.08994 * 109.47470 * 296.03965 * 5 4 3 36 36 H 1.08990 * 109.47413 * 56.04674 * 5 4 3 37 37 H 1.09007 * 109.46484 * 176.04727 * 5 4 3 38 38 H 1.08997 * 109.46717 * 70.00621 * 6 4 3 39 39 H 1.08991 * 109.47056 * 310.00095 * 6 4 3 40 40 H 0.96995 * 120.00250 * 359.97438 * 9 7 6 41 41 H 1.08996 * 109.47393 * 60.00295 * 10 9 7 42 42 H 1.09004 * 109.47674 * 300.00146 * 10 9 7 43 43 H 1.08007 * 125.86781 * 0.03833 * 12 11 10 44 44 H 1.09005 * 109.94596 * 289.08950 * 16 15 11 45 45 H 1.08995 * 109.95446 * 50.34958 * 16 15 11 46 46 H 0.97001 * 120.00162 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.51221 * 56.33698 * 26 17 16 48 48 H 1.08996 * 109.51216 * 176.48957 * 26 17 16 49 49 H 1.09003 * 109.51603 * 41.61815 * 27 14 13 50 50 H 1.09004 * 109.51358 * 281.47209 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4427 0.0006 5 6 4.0348 0.8860 1.2543 6 6 4.0354 2.7933 -0.2375 7 6 5.5218 2.7184 -0.4742 8 8 6.0868 1.6456 -0.4477 9 7 6.2230 3.8436 -0.7165 10 6 7.6681 3.7709 -0.9460 11 6 8.2081 5.1564 -1.1905 12 6 8.5073 5.7180 -2.4383 13 7 8.9497 6.9358 -2.2450 14 7 8.9541 7.1849 -0.8699 15 6 8.4918 6.0755 -0.2482 16 6 8.3358 5.9485 1.2487 17 7 9.0081 7.1142 1.8528 18 6 9.8000 6.9757 2.9613 19 1 10.5729 7.7015 3.1669 20 6 9.6095 5.9024 3.8207 21 7 8.5001 5.1971 3.7569 22 14 10.9276 5.4591 5.0680 23 1 12.0694 6.3994 4.9368 24 1 10.3636 5.5526 6.4385 25 1 11.3977 4.0726 4.8196 26 6 8.8016 8.4299 1.2285 27 6 9.3803 8.4114 -0.1905 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.7434 1.5265 2.0867 36 1 3.6292 -0.1141 1.4061 37 1 5.1222 0.8328 1.2001 38 1 3.8371 3.4190 0.6326 39 1 3.5492 3.2235 -1.1130 40 1 5.7710 4.7015 -0.7388 41 1 7.8668 3.1445 -1.8156 42 1 8.1541 3.3413 -0.0700 43 1 8.3900 5.2317 -3.3956 44 1 7.2785 5.9504 1.5138 45 1 8.8054 5.0278 1.5948 46 1 8.3668 4.4473 4.3577 47 1 7.7346 8.6482 1.1837 48 1 9.3062 9.1956 1.8177 49 1 9.0178 9.2784 -0.7427 50 1 10.4688 8.4402 -0.1400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128560695.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:08 Heat of formation + Delta-G solvation = 71.708560 kcal Electronic energy + Delta-G solvation = -29444.879780 eV Core-core repulsion = 25509.661408 eV Total energy + Delta-G solvation = -3935.218372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.00033 -39.54850 -37.34990 -36.32485 -34.69853 -33.28354 -33.00076 -31.34334 -30.24331 -29.32821 -27.90072 -27.05000 -26.00948 -24.79824 -23.57469 -22.97372 -21.77089 -20.85731 -20.21491 -19.99597 -18.41198 -17.02857 -16.74656 -16.27463 -15.93919 -15.72434 -15.43772 -15.20479 -14.77195 -14.62011 -14.24965 -14.11786 -13.86554 -13.64949 -13.40675 -13.22900 -13.19875 -12.78674 -12.70754 -12.46350 -12.18264 -11.94393 -11.75416 -11.71628 -11.63329 -11.41143 -11.24616 -11.22900 -11.01131 -10.89792 -10.74574 -10.71781 -10.20009 -10.18815 -10.10404 -9.55596 -8.93293 -8.69297 -8.56953 -8.34872 -7.92387 -7.10964 -6.04137 -3.46689 2.40774 2.90347 2.95152 3.00241 3.27096 3.35678 3.36944 3.54827 4.10420 4.29365 4.72121 4.86066 4.93052 4.96810 5.04151 5.13112 5.18879 5.25642 5.28215 5.32010 5.36479 5.40271 5.53363 5.53671 5.56226 5.59827 5.66110 5.66687 5.71140 5.81692 5.85726 5.96866 6.07343 6.14976 6.20349 6.26828 6.36590 6.39131 6.54121 6.77490 6.88610 6.89087 7.01442 7.08003 7.12652 7.55480 7.59031 7.85646 8.06734 8.22315 8.56150 8.89517 9.51918 10.04391 11.06767 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.003090 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.667332 B = 9060.731479 C =10878.313507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.054 3.946 4 N -0.525 5.525 5 C 0.015 3.985 6 C 0.035 3.965 7 C 0.513 3.487 8 O -0.529 6.529 9 N -0.721 5.721 10 C 0.212 3.788 11 C -0.287 4.287 12 C 0.056 3.944 13 N -0.318 5.318 14 N -0.358 5.358 15 C 0.119 3.881 16 C 0.232 3.768 17 N -0.597 5.597 18 C -0.263 4.263 19 H 0.074 0.926 20 C 0.008 3.992 21 N -0.903 5.903 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.286 1.286 26 C 0.129 3.871 27 C 0.114 3.886 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.021 0.979 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.398 0.602 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.176 0.824 44 H 0.056 0.944 45 H 0.109 0.891 46 H 0.259 0.741 47 H 0.036 0.964 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.645 -2.725 -8.182 14.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.074 4.074 4 N -0.249 5.249 5 C -0.132 4.132 6 C -0.097 4.097 7 C 0.299 3.701 8 O -0.405 6.405 9 N -0.373 5.373 10 C 0.088 3.912 11 C -0.300 4.300 12 C -0.130 4.130 13 N -0.138 5.138 14 N -0.139 5.139 15 C -0.013 4.013 16 C 0.105 3.895 17 N -0.319 5.319 18 C -0.392 4.392 19 H 0.092 0.908 20 C -0.191 4.191 21 N -0.546 5.546 22 Si 0.738 3.262 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.212 1.212 26 C 0.001 3.999 27 C -0.010 4.010 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.231 0.769 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.193 0.807 44 H 0.073 0.927 45 H 0.127 0.873 46 H 0.069 0.931 47 H 0.054 0.946 48 H 0.103 0.897 49 H 0.098 0.902 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.589 -2.713 -8.905 14.098 hybrid contribution -0.105 0.109 1.584 1.591 sum -10.693 -2.604 -7.320 13.218 Atomic orbital electron populations 1.21741 0.95725 1.01697 1.01696 1.21534 0.95119 0.96356 1.02933 1.22206 0.86994 0.97482 1.00695 1.61677 1.06852 1.19976 1.36376 1.22623 1.03231 0.99170 0.88219 1.21988 0.93585 0.91464 1.02628 1.20370 0.88869 0.84149 0.76745 1.90653 1.71359 1.28358 1.50146 1.46186 1.09302 1.09249 1.72567 1.19272 0.78828 0.91869 1.01204 1.19443 1.19599 0.98677 0.92236 1.23681 0.98968 0.92162 0.98237 1.77171 1.25274 1.17722 0.93650 1.48497 1.49416 1.12585 1.03436 1.22579 0.93417 0.86657 0.98662 1.19906 0.97438 0.93285 0.78876 1.44220 1.56434 1.00293 1.30989 1.19198 1.09564 1.10782 0.99609 0.90829 1.25037 0.96726 0.99714 0.97672 1.69947 1.23302 1.21507 1.39877 0.86137 0.81080 0.78386 0.80641 1.20182 1.21461 1.21222 1.21273 0.98251 0.90597 0.89808 1.22543 1.00533 0.83065 0.94864 0.92591 0.92899 0.92713 0.91049 0.91809 0.94871 0.90884 0.96015 0.91426 0.89040 0.91798 0.88216 0.76854 0.91394 0.90979 0.80749 0.92671 0.87323 0.93132 0.94641 0.89730 0.90200 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -1.07 5.87 -26.73 -0.16 -1.23 16 3 C 0.05 0.52 4.96 -3.82 -0.02 0.50 16 4 N -0.52 -6.52 4.50 -244.37 -1.10 -7.62 16 5 C 0.02 0.20 9.01 60.07 0.54 0.74 16 6 C 0.03 0.41 5.45 -4.98 -0.03 0.38 16 7 C 0.51 7.71 7.55 -10.98 -0.08 7.63 16 8 O -0.53 -9.83 14.31 5.56 0.08 -9.75 16 9 N -0.72 -10.26 5.55 -61.47 -0.34 -10.60 16 10 C 0.21 3.38 5.95 -5.20 -0.03 3.35 16 11 C -0.29 -4.91 5.46 -105.21 -0.57 -5.48 16 12 C 0.06 0.91 11.97 -17.22 -0.21 0.70 16 13 N -0.32 -5.82 12.61 30.70 0.39 -5.43 16 14 N -0.36 -6.78 4.03 -56.94 -0.23 -7.01 16 15 C 0.12 2.31 6.71 -82.17 -0.55 1.76 16 16 C 0.23 5.13 5.11 -4.48 -0.02 5.11 16 17 N -0.60 -13.69 3.01 -172.96 -0.52 -14.21 16 18 C -0.26 -6.65 9.66 -15.06 -0.15 -6.79 16 19 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 20 C 0.01 0.20 5.00 -17.43 -0.09 0.12 16 21 N -0.90 -24.25 11.07 55.49 0.61 -23.64 16 22 Si 0.91 20.68 29.58 -169.99 -5.03 15.65 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.13 2.37 6.49 -3.59 -0.02 2.35 16 27 C 0.11 1.91 7.44 -3.88 -0.03 1.88 16 28 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.58 6.47 -51.93 -0.34 0.25 16 33 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 34 H 0.07 0.63 7.93 -51.93 -0.41 0.22 16 35 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.78 6.30 -51.93 -0.33 0.45 16 37 H 0.09 1.45 5.88 -51.92 -0.31 1.14 16 38 H 0.06 0.72 8.12 -51.93 -0.42 0.29 16 39 H 0.10 0.94 7.93 -51.93 -0.41 0.53 16 40 H 0.40 5.03 8.46 -40.82 -0.35 4.69 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.18 2.20 8.06 -52.48 -0.42 1.78 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.11 2.73 6.46 -51.93 -0.34 2.39 16 46 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 49 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -30.39 399.98 -9.51 -39.90 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -8.35 Total: 6.36 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -1.05 Total: 10.32 kcal Atomic # 7 Polarization: -67.32 SS G_CDS: -1.19 Total: -68.51 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.39 -9.51 -39.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128560695.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.612 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds