Wall clock time and date at job start Tue Mar 31 2020 19:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46852 * 2 1 4 4 N 1.46904 * 109.47236 * 179.97438 * 3 2 1 5 5 C 1.46901 * 110.99588 * 293.95559 * 4 3 2 6 6 C 1.46899 * 110.99892 * 169.99964 * 4 3 2 7 7 C 1.50702 * 109.46611 * 190.00115 * 6 4 3 8 8 O 1.21279 * 120.00343 * 0.02562 * 7 6 4 9 9 N 1.34778 * 119.99604 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99861 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47033 * 180.02562 * 10 9 7 12 12 C 1.40071 * 126.12777 * 259.87623 * 11 10 9 13 13 N 1.31008 * 108.25933 * 179.83696 * 12 11 10 14 14 N 1.39752 * 108.17587 * 0.36260 * 13 12 11 15 15 C 1.34642 * 126.12436 * 80.00440 * 11 10 9 16 16 C 1.51035 * 127.91038 * 359.68600 * 15 11 10 17 17 N 1.47502 * 107.00120 * 169.72279 * 16 15 11 18 18 C 1.36940 * 121.01057 * 222.89486 * 17 16 15 19 19 H 1.08000 * 119.99632 * 155.91392 * 18 17 16 20 20 C 1.38810 * 120.00291 * 335.92287 * 18 17 16 21 21 N 1.31616 * 119.99791 * 344.44867 * 20 18 17 22 22 Si 1.86801 * 120.00237 * 164.45215 * 20 18 17 23 23 H 1.48499 * 109.46896 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46773 * 119.99548 * 22 20 18 25 25 H 1.48494 * 109.47008 * 239.99575 * 22 20 18 26 26 C 1.47090 * 117.97851 * 42.91837 * 17 16 15 27 27 C 1.46544 * 127.31949 * 179.45101 * 14 13 12 28 28 H 1.09009 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47761 * 299.99541 * 1 2 3 30 30 H 1.09002 * 109.47342 * 60.00131 * 1 2 3 31 31 H 1.08991 * 109.47565 * 240.00200 * 2 1 3 32 32 H 1.09002 * 109.47342 * 119.99868 * 2 1 3 33 33 H 1.09002 * 109.47101 * 60.00253 * 3 2 1 34 34 H 1.09002 * 109.47040 * 300.00053 * 3 2 1 35 35 H 1.08994 * 109.47470 * 296.03965 * 5 4 3 36 36 H 1.08990 * 109.47413 * 56.04674 * 5 4 3 37 37 H 1.09007 * 109.46484 * 176.04727 * 5 4 3 38 38 H 1.08997 * 109.46717 * 70.00621 * 6 4 3 39 39 H 1.08991 * 109.47056 * 310.00095 * 6 4 3 40 40 H 0.96995 * 120.00250 * 359.97438 * 9 7 6 41 41 H 1.08996 * 109.47393 * 60.00295 * 10 9 7 42 42 H 1.09004 * 109.47674 * 300.00146 * 10 9 7 43 43 H 1.08007 * 125.86781 * 0.03833 * 12 11 10 44 44 H 1.09005 * 109.94596 * 289.08950 * 16 15 11 45 45 H 1.08995 * 109.95446 * 50.34958 * 16 15 11 46 46 H 0.97001 * 120.00162 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.51221 * 56.33698 * 26 17 16 48 48 H 1.08996 * 109.51216 * 176.48957 * 26 17 16 49 49 H 1.09003 * 109.51603 * 41.61815 * 27 14 13 50 50 H 1.09004 * 109.51358 * 281.47209 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4427 0.0006 5 6 4.0348 0.8860 1.2543 6 6 4.0354 2.7933 -0.2375 7 6 5.5218 2.7184 -0.4742 8 8 6.0868 1.6456 -0.4477 9 7 6.2230 3.8436 -0.7165 10 6 7.6681 3.7709 -0.9460 11 6 8.2081 5.1564 -1.1905 12 6 8.5073 5.7180 -2.4383 13 7 8.9497 6.9358 -2.2450 14 7 8.9541 7.1849 -0.8699 15 6 8.4918 6.0755 -0.2482 16 6 8.3358 5.9485 1.2487 17 7 9.0081 7.1142 1.8528 18 6 9.8000 6.9757 2.9613 19 1 10.5729 7.7015 3.1669 20 6 9.6095 5.9024 3.8207 21 7 8.5001 5.1971 3.7569 22 14 10.9276 5.4591 5.0680 23 1 12.0694 6.3994 4.9368 24 1 10.3636 5.5526 6.4385 25 1 11.3977 4.0726 4.8196 26 6 8.8016 8.4299 1.2285 27 6 9.3803 8.4114 -0.1905 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.7434 1.5265 2.0867 36 1 3.6292 -0.1141 1.4061 37 1 5.1222 0.8328 1.2001 38 1 3.8371 3.4190 0.6326 39 1 3.5492 3.2235 -1.1130 40 1 5.7710 4.7015 -0.7388 41 1 7.8668 3.1445 -1.8156 42 1 8.1541 3.3413 -0.0700 43 1 8.3900 5.2317 -3.3956 44 1 7.2785 5.9504 1.5138 45 1 8.8054 5.0278 1.5948 46 1 8.3668 4.4473 4.3577 47 1 7.7346 8.6482 1.1837 48 1 9.3062 9.1956 1.8177 49 1 9.0178 9.2784 -0.7427 50 1 10.4688 8.4402 -0.1400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128560695.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:07 Heat of formation + Delta-G solvation = 51.042630 kcal Electronic energy + Delta-G solvation = -29445.775922 eV Core-core repulsion = 25509.661408 eV Total energy + Delta-G solvation = -3936.114514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.42549 -40.72925 -38.32138 -37.95562 -36.02817 -34.62935 -34.05129 -32.93376 -31.83325 -30.66473 -29.08620 -27.93277 -27.67234 -26.15147 -25.13895 -23.96852 -23.27331 -21.65149 -21.57976 -21.24994 -19.95221 -18.54928 -18.23734 -17.59171 -17.06132 -16.88452 -16.73974 -16.46169 -16.22799 -15.78495 -15.52560 -15.42074 -15.16200 -15.01273 -14.91760 -14.69033 -14.17996 -14.11215 -13.92065 -13.64346 -13.36177 -13.15524 -12.99585 -12.90164 -12.78335 -12.71287 -12.63313 -12.60843 -12.33972 -12.31935 -12.03748 -11.92340 -11.89436 -11.61192 -11.42963 -10.82028 -10.76572 -10.06474 -9.96157 -9.41043 -9.25919 -8.95858 -7.99991 -5.43188 0.93324 1.43626 1.47699 1.55285 1.59253 1.65863 1.76134 2.41755 2.44320 3.09839 3.19414 3.42639 3.61238 3.82471 3.89708 3.99394 4.15982 4.16304 4.19750 4.23965 4.31729 4.36527 4.38214 4.48125 4.51649 4.55352 4.59097 4.71896 4.76613 4.80121 4.85759 4.87674 4.91120 4.94338 5.02444 5.11929 5.24421 5.25479 5.32311 5.36720 5.45457 5.54827 5.58036 5.76376 5.93868 6.09474 6.12565 6.19399 6.69956 6.80703 6.98322 7.38245 7.64565 8.15556 9.09229 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.003090 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.667332 B = 9060.731479 C =10878.313507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.055 3.945 4 N -0.540 5.540 5 C 0.021 3.979 6 C 0.040 3.960 7 C 0.509 3.491 8 O -0.569 6.569 9 N -0.713 5.713 10 C 0.219 3.781 11 C -0.273 4.273 12 C 0.067 3.933 13 N -0.326 5.326 14 N -0.367 5.367 15 C 0.095 3.905 16 C 0.251 3.749 17 N -0.616 5.616 18 C -0.265 4.265 19 H 0.079 0.921 20 C -0.043 4.043 21 N -0.930 5.930 22 Si 0.964 3.036 23 H -0.265 1.265 24 H -0.290 1.290 25 H -0.295 1.295 26 C 0.128 3.872 27 C 0.117 3.883 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.089 0.911 35 H 0.023 0.977 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.408 0.592 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.215 0.785 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.252 0.748 47 H 0.041 0.959 48 H 0.099 0.901 49 H 0.112 0.888 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.547 -1.578 -9.887 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.072 4.072 4 N -0.264 5.264 5 C -0.127 4.127 6 C -0.091 4.091 7 C 0.296 3.704 8 O -0.448 6.448 9 N -0.365 5.365 10 C 0.095 3.905 11 C -0.285 4.285 12 C -0.119 4.119 13 N -0.146 5.146 14 N -0.149 5.149 15 C -0.037 4.037 16 C 0.124 3.876 17 N -0.340 5.340 18 C -0.395 4.395 19 H 0.097 0.903 20 C -0.239 4.239 21 N -0.575 5.575 22 Si 0.793 3.207 23 H -0.189 1.189 24 H -0.217 1.217 25 H -0.222 1.222 26 C 0.002 3.998 27 C -0.006 4.006 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.041 0.959 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.243 0.757 41 H 0.100 0.900 42 H 0.058 0.942 43 H 0.231 0.769 44 H 0.053 0.947 45 H 0.089 0.911 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.117 0.883 49 H 0.130 0.870 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.499 -1.503 -10.626 15.729 hybrid contribution 0.171 -0.228 2.049 2.069 sum -11.329 -1.731 -8.576 14.314 Atomic orbital electron populations 1.21704 0.94184 1.02280 1.02226 1.21516 0.96401 0.95703 1.02163 1.22293 0.85056 0.98231 1.01652 1.61668 1.08630 1.20316 1.35821 1.22482 1.01226 1.00095 0.88897 1.22023 0.91149 0.91652 1.04276 1.21012 0.90273 0.83451 0.75639 1.90640 1.72433 1.29837 1.51885 1.46070 1.08547 1.09757 1.72133 1.19089 0.79702 0.91406 1.00307 1.19539 1.18329 0.98293 0.92389 1.24248 0.97208 0.91330 0.99152 1.77166 1.25733 1.18743 0.93006 1.48683 1.49625 1.12776 1.03773 1.22211 0.95809 0.88206 0.97460 1.19330 0.95706 0.91785 0.80781 1.44452 1.56420 1.02240 1.30855 1.19510 1.09677 1.10464 0.99809 0.90325 1.25705 0.98320 1.00194 0.99694 1.70087 1.24808 1.21877 1.40715 0.85257 0.79355 0.77576 0.78559 1.18948 1.21677 1.22240 1.21437 0.98923 0.88736 0.90746 1.22534 1.00474 0.83647 0.93916 0.92045 0.92569 0.91945 0.91914 0.92520 0.94379 0.89296 0.95889 0.90316 0.92300 0.90972 0.85107 0.75706 0.90038 0.94181 0.76882 0.94681 0.91137 0.93915 0.94095 0.88276 0.86958 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.07 16 2 C -0.12 -1.96 5.87 30.59 0.18 -1.78 16 3 C 0.05 0.96 4.96 86.30 0.43 1.39 16 4 N -0.54 -12.99 4.50 -927.05 -4.17 -17.17 16 5 C 0.02 0.56 9.01 127.69 1.15 1.71 16 6 C 0.04 0.89 5.45 85.56 0.47 1.36 16 7 C 0.51 15.31 7.55 87.66 0.66 15.98 16 8 O -0.57 -21.77 14.31 -3.03 -0.04 -21.81 16 9 N -0.71 -20.12 5.55 -466.79 -2.59 -22.71 16 10 C 0.22 7.03 5.95 85.63 0.51 7.54 16 11 C -0.27 -9.09 5.46 -20.24 -0.11 -9.20 16 12 C 0.07 1.98 11.97 85.26 1.02 3.00 16 13 N -0.33 -11.09 12.61 -56.79 -0.72 -11.80 16 14 N -0.37 -13.32 4.03 -334.04 -1.35 -14.66 16 15 C 0.09 3.67 6.71 41.30 0.28 3.95 16 16 C 0.25 11.49 5.11 85.55 0.44 11.93 16 17 N -0.62 -28.53 3.01 -701.13 -2.11 -30.64 16 18 C -0.27 -13.52 9.66 84.03 0.81 -12.71 16 19 H 0.08 3.84 7.88 -2.91 -0.02 3.82 16 20 C -0.04 -2.27 5.00 84.86 0.42 -1.85 16 21 N -0.93 -51.89 11.07 21.65 0.24 -51.66 16 22 Si 0.96 43.30 29.58 68.60 2.03 45.33 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 26 C 0.13 4.57 6.49 86.35 0.56 5.14 16 27 C 0.12 3.69 7.44 86.46 0.64 4.33 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 0.99 6.47 -2.39 -0.02 0.98 16 33 H 0.04 0.65 8.12 -2.39 -0.02 0.63 16 34 H 0.09 1.29 7.93 -2.39 -0.02 1.27 16 35 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.08 1.85 6.30 -2.39 -0.02 1.83 16 37 H 0.06 1.96 5.88 -2.38 -0.01 1.95 16 38 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 39 H 0.13 2.11 7.93 -2.39 -0.02 2.09 16 40 H 0.41 9.94 8.46 -92.71 -0.78 9.16 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.21 4.47 8.06 -2.91 -0.02 4.45 16 44 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.07 3.75 6.46 -2.39 -0.02 3.74 16 46 H 0.25 13.84 8.31 -92.71 -0.77 13.06 16 47 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.10 3.19 7.94 -2.39 -0.02 3.18 16 49 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 50 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -67.28 399.98 -0.39 -67.67 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.15 Total: 27.74 kcal Atomic # 6 Polarization: 21.54 SS G_CDS: 8.18 Total: 29.71 kcal Atomic # 7 Polarization: -137.94 SS G_CDS: -10.70 Total: -148.64 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.04 Total: -21.81 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -67.28 -0.39 -67.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128560695.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.713 kcal (2) G-P(sol) polarization free energy of solvation -67.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds