Wall clock time and date at job start Tue Mar 31 2020 18:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46715 * 2 1 4 4 H 1.08996 * 109.46871 * 55.00429 * 3 2 1 5 5 C 1.52994 * 109.47196 * 295.00133 * 3 2 1 6 6 C 1.53001 * 109.46540 * 175.00098 * 3 2 1 7 7 C 1.53003 * 109.46818 * 184.99921 * 6 3 2 8 8 C 1.50698 * 109.47068 * 179.97438 * 7 6 3 9 9 O 1.21279 * 120.00258 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00136 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00081 * 180.02562 * 10 8 7 12 12 H 1.08991 * 110.64235 * 31.85615 * 11 10 8 13 13 C 1.54323 * 110.86922 * 268.60430 * 11 10 8 14 14 N 1.47027 * 107.27082 * 219.37525 * 13 11 10 15 15 C 1.36939 * 125.64582 * 178.90131 * 14 13 11 16 16 H 1.08001 * 119.99660 * 180.02562 * 15 14 13 17 17 C 1.38808 * 120.00131 * 0.02562 * 15 14 13 18 18 N 1.31623 * 120.00119 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00042 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47018 * 60.00102 * 19 17 15 21 21 H 1.48493 * 109.47091 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46799 * 300.00274 * 19 17 15 23 23 C 1.47419 * 108.70268 * 358.93878 * 14 13 11 24 24 C 1.54905 * 104.83334 * 24.13300 * 23 14 13 25 25 H 1.09007 * 111.03992 * 204.90016 * 24 23 14 26 26 N 1.46500 * 111.00683 * 81.06150 * 24 23 14 27 27 C 1.35312 * 125.86582 * 332.80197 * 26 24 23 28 28 C 1.35359 * 106.17441 * 179.77310 * 27 26 24 29 29 N 1.33772 * 106.49554 * 0.22938 * 28 27 26 30 30 N 1.28640 * 108.88426 * 359.97438 * 29 28 27 31 31 H 1.08996 * 109.47005 * 59.99830 * 1 2 3 32 32 H 1.08996 * 109.46694 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46935 * 299.99400 * 1 2 3 34 34 H 1.09004 * 109.46935 * 240.00600 * 2 1 3 35 35 H 1.08996 * 109.47005 * 120.00170 * 2 1 3 36 36 H 1.09005 * 109.46919 * 180.02562 * 5 3 2 37 37 H 1.09005 * 109.47272 * 299.99990 * 5 3 2 38 38 H 1.08999 * 109.47461 * 60.00303 * 5 3 2 39 39 H 1.08997 * 109.47601 * 65.00526 * 6 3 2 40 40 H 1.09000 * 109.47466 * 305.00122 * 6 3 2 41 41 H 1.09007 * 109.47183 * 60.00388 * 7 6 3 42 42 H 1.08991 * 109.47476 * 300.00213 * 7 6 3 43 43 H 0.97001 * 120.00011 * 359.97438 * 10 8 7 44 44 H 1.08995 * 109.88326 * 338.79043 * 13 11 10 45 45 H 1.09002 * 109.87943 * 99.95690 * 13 11 10 46 46 H 0.96993 * 119.99704 * 179.97438 * 18 17 15 47 47 H 1.08996 * 110.37153 * 265.29327 * 23 14 13 48 48 H 1.09004 * 110.36502 * 142.96724 * 23 14 13 49 49 H 1.08002 * 126.91567 * 0.04325 * 27 26 24 50 50 H 1.07994 * 126.74720 * 180.25253 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 4.0644 2.8851 0.2511 8 6 5.5663 2.8868 0.3755 9 8 6.1770 1.8391 0.3645 10 7 6.2309 4.0528 0.4991 11 6 7.6909 4.0546 0.6195 12 1 8.1232 3.2218 0.0649 13 6 8.1204 4.0057 2.1010 14 7 9.2807 4.8965 2.2487 15 6 9.9487 5.1498 3.4169 16 1 10.7930 5.8233 3.4210 17 6 9.5408 4.5410 4.5958 18 7 8.5122 3.7198 4.5907 19 14 10.4516 4.8872 6.1896 20 1 10.3833 6.3391 6.4934 21 1 9.8241 4.1196 7.2950 22 1 11.8719 4.4775 6.0470 23 6 9.6053 5.4725 0.9310 24 6 8.2804 5.4042 0.1312 25 1 8.4717 5.3816 -0.9417 26 7 7.3978 6.5200 0.4809 27 6 7.3826 7.1784 1.6630 28 6 6.4259 8.1296 1.5524 29 7 5.9061 8.0048 0.3262 30 7 6.5017 7.0406 -0.2824 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.9988 3.1542 -1.3074 37 1 2.0698 1.5876 -2.1492 38 1 0.5488 2.1253 -1.3969 39 1 4.0030 0.9837 -0.7597 40 1 3.8571 0.8800 1.0113 41 1 3.6264 3.3458 1.1366 42 1 3.7722 3.4494 -0.6344 43 1 5.7425 4.8909 0.5075 44 1 7.3043 4.3518 2.7351 45 1 8.3979 2.9873 2.3730 46 1 8.2274 3.2942 5.4144 47 1 10.3768 4.8811 0.4381 48 1 9.9303 6.5073 1.0390 49 1 8.0106 6.9867 2.5204 50 1 6.1391 8.8481 2.3059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129337620.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:09 Heat of formation + Delta-G solvation = 75.686546 kcal Electronic energy + Delta-G solvation = -30150.625439 eV Core-core repulsion = 26215.579566 eV Total energy + Delta-G solvation = -3935.045873 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.94271 -39.70977 -38.05399 -37.05283 -34.16728 -33.39693 -32.35910 -31.72272 -30.53931 -29.32097 -28.58128 -27.58661 -25.87798 -24.83029 -22.98735 -22.38466 -22.18286 -20.67617 -20.14520 -19.92949 -19.84125 -17.69556 -17.17229 -16.85796 -15.80940 -15.67687 -15.43987 -15.00361 -14.87809 -14.47003 -14.32303 -14.11385 -13.87734 -13.56475 -13.43177 -13.35805 -12.94689 -12.70767 -12.44526 -12.31254 -12.11293 -11.89210 -11.77282 -11.70207 -11.37507 -11.33021 -11.10835 -11.01497 -10.86051 -10.68120 -10.64999 -10.60482 -10.55456 -10.51520 -10.27304 -10.00483 -9.77961 -9.55053 -8.96053 -8.85439 -8.66738 -7.16046 -5.92712 -3.32341 1.99967 2.64687 2.92372 2.93116 3.28316 3.33342 3.35745 3.40188 4.28568 4.50987 4.61457 4.72621 4.74671 4.76363 4.97379 5.03954 5.08665 5.12668 5.25347 5.29227 5.30687 5.41191 5.42246 5.44022 5.59619 5.61673 5.65786 5.73916 5.78504 5.81215 5.83477 5.87386 5.93149 5.96456 5.99686 6.05514 6.14384 6.15760 6.18823 6.32379 6.37463 6.53590 6.60237 7.05032 7.28325 7.31511 7.60184 7.73942 7.96361 8.49290 8.86096 8.94396 9.54420 10.14021 11.16934 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010877 B = 0.003363 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.632239 B = 8324.429463 C = 9793.091431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.070 0.930 5 C -0.151 4.151 6 C -0.097 4.097 7 C -0.141 4.141 8 C 0.515 3.485 9 O -0.539 6.539 10 N -0.718 5.718 11 C 0.110 3.890 12 H 0.111 0.889 13 C 0.169 3.831 14 N -0.601 5.601 15 C -0.247 4.247 16 H 0.082 0.918 17 C 0.003 3.997 18 N -0.912 5.912 19 Si 0.915 3.085 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.128 3.872 24 C 0.113 3.887 25 H 0.118 0.882 26 N -0.275 5.275 27 C -0.005 4.005 28 C -0.076 4.076 29 N -0.278 5.278 30 N -0.110 5.110 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.397 0.603 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.257 0.743 47 H 0.054 0.946 48 H 0.059 0.941 49 H 0.204 0.796 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.069 -0.327 -9.155 13.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.209 4.209 6 C -0.135 4.135 7 C -0.181 4.181 8 C 0.302 3.698 9 O -0.415 6.415 10 N -0.370 5.370 11 C 0.003 3.997 12 H 0.129 0.871 13 C 0.043 3.957 14 N -0.329 5.329 15 C -0.374 4.374 16 H 0.100 0.900 17 C -0.195 4.195 18 N -0.557 5.557 19 Si 0.744 3.256 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.210 1.210 23 C 0.000 4.000 24 C 0.009 3.991 25 H 0.136 0.864 26 N -0.069 5.069 27 C -0.157 4.157 28 C -0.233 4.233 29 N -0.145 5.145 30 N -0.089 5.089 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.232 0.768 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.220 0.780 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.323 -1.234 -10.324 14.652 hybrid contribution 0.898 0.549 2.052 2.307 sum -9.425 -0.685 -8.272 12.558 Atomic orbital electron populations 1.21827 0.96091 1.01348 1.01805 1.21564 0.95621 0.96387 1.02169 1.21206 0.95386 0.96229 0.98425 0.91154 1.21953 1.01092 1.00597 0.97213 1.21380 0.93964 0.94706 1.03472 1.21728 0.92051 1.00164 1.04154 1.20660 0.90146 0.83440 0.75543 1.90696 1.69897 1.31183 1.49752 1.45896 1.07200 1.09157 1.74706 1.22830 0.80380 0.95065 1.01405 0.87117 1.21629 0.90366 0.96146 0.87555 1.44473 1.34260 1.51693 1.02489 1.18944 1.10514 1.24245 0.83681 0.89972 1.24852 0.97981 0.98629 0.98056 1.69937 1.26826 1.32087 1.26875 0.86172 0.78999 0.77692 0.82690 1.20916 1.21513 1.20997 1.21929 0.91065 0.99157 0.87824 1.23362 0.91196 0.83086 1.01463 0.86379 1.47272 1.25232 1.23982 1.10375 1.24202 1.03339 0.95421 0.92705 1.23545 0.99557 1.03319 0.96849 1.75008 1.21920 1.11319 1.06221 1.78214 1.02694 1.08193 1.19843 0.92581 0.93029 0.92834 0.92002 0.91883 0.92493 0.92707 0.92644 0.91242 0.91045 0.89128 0.88965 0.76785 0.92431 0.92344 0.93274 0.92862 0.92303 0.77957 0.79875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 37.16 0.36 -0.83 16 2 C -0.12 -1.08 5.40 -26.73 -0.14 -1.22 16 3 C -0.09 -0.90 2.39 -90.62 -0.22 -1.12 16 4 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.15 -1.31 8.70 37.15 0.32 -0.99 16 6 C -0.10 -1.16 3.97 -26.73 -0.11 -1.27 16 7 C -0.14 -1.77 5.45 -27.88 -0.15 -1.92 16 8 C 0.52 8.59 7.83 -10.99 -0.09 8.50 16 9 O -0.54 -10.80 15.63 5.56 0.09 -10.72 16 10 N -0.72 -11.89 5.08 -52.03 -0.26 -12.16 16 11 C 0.11 1.94 3.18 -66.09 -0.21 1.73 16 12 H 0.11 1.98 7.55 -51.93 -0.39 1.59 16 13 C 0.17 3.71 4.75 -3.06 -0.01 3.70 16 14 N -0.60 -13.02 2.23 -170.08 -0.38 -13.40 16 15 C -0.25 -5.99 10.06 -15.06 -0.15 -6.14 16 16 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 17 C 0.00 0.07 5.49 -17.43 -0.10 -0.02 16 18 N -0.91 -24.81 10.31 55.49 0.57 -24.24 16 19 Si 0.91 20.45 29.55 -169.99 -5.02 15.42 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.13 2.17 6.21 -2.53 -0.02 2.16 16 24 C 0.11 1.75 4.05 -65.78 -0.27 1.49 16 25 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 26 N -0.28 -4.49 2.44 -52.68 -0.13 -4.62 16 27 C -0.01 -0.08 10.01 -17.04 -0.17 -0.26 16 28 C -0.08 -1.18 12.05 -17.73 -0.21 -1.40 16 29 N -0.28 -4.76 12.41 30.24 0.38 -4.39 16 30 N -0.11 -1.87 12.26 60.35 0.74 -1.13 16 31 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.43 6.56 -51.93 -0.34 0.09 16 39 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 40 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.01 6.56 -51.93 -0.34 0.66 16 43 H 0.40 6.43 6.80 -40.82 -0.28 6.15 16 44 H 0.06 1.43 7.27 -51.93 -0.38 1.05 16 45 H 0.06 1.53 7.51 -51.93 -0.39 1.14 16 46 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.06 0.97 7.86 -51.93 -0.41 0.56 16 49 H 0.20 3.73 6.81 -52.49 -0.36 3.38 16 50 H 0.18 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 394.19 15.07 5.94 5.94 Total: -1.00 -28.87 394.19 -7.42 -36.30 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -8.18 Total: 10.57 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.16 Total: 2.41 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.91 Total: -59.92 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.87 -7.42 -36.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129337620.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.982 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds