Wall clock time and date at job start Tue Mar 31 2020 18:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46715 * 2 1 4 4 H 1.08996 * 109.46871 * 55.00429 * 3 2 1 5 5 C 1.52994 * 109.47196 * 295.00133 * 3 2 1 6 6 C 1.53001 * 109.46540 * 175.00098 * 3 2 1 7 7 C 1.53003 * 109.46818 * 184.99921 * 6 3 2 8 8 C 1.50698 * 109.47068 * 179.97438 * 7 6 3 9 9 O 1.21279 * 120.00258 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00136 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00081 * 180.02562 * 10 8 7 12 12 H 1.08991 * 110.64235 * 31.85615 * 11 10 8 13 13 C 1.54323 * 110.86922 * 268.60430 * 11 10 8 14 14 N 1.47027 * 107.27082 * 219.37525 * 13 11 10 15 15 C 1.36939 * 125.64582 * 178.90131 * 14 13 11 16 16 H 1.08001 * 119.99660 * 180.02562 * 15 14 13 17 17 C 1.38808 * 120.00131 * 0.02562 * 15 14 13 18 18 N 1.31623 * 120.00119 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00042 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47018 * 60.00102 * 19 17 15 21 21 H 1.48493 * 109.47091 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46799 * 300.00274 * 19 17 15 23 23 C 1.47419 * 108.70268 * 358.93878 * 14 13 11 24 24 C 1.54905 * 104.83334 * 24.13300 * 23 14 13 25 25 H 1.09007 * 111.03992 * 204.90016 * 24 23 14 26 26 N 1.46500 * 111.00683 * 81.06150 * 24 23 14 27 27 C 1.35312 * 125.86582 * 332.80197 * 26 24 23 28 28 C 1.35359 * 106.17441 * 179.77310 * 27 26 24 29 29 N 1.33772 * 106.49554 * 0.22938 * 28 27 26 30 30 N 1.28640 * 108.88426 * 359.97438 * 29 28 27 31 31 H 1.08996 * 109.47005 * 59.99830 * 1 2 3 32 32 H 1.08996 * 109.46694 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46935 * 299.99400 * 1 2 3 34 34 H 1.09004 * 109.46935 * 240.00600 * 2 1 3 35 35 H 1.08996 * 109.47005 * 120.00170 * 2 1 3 36 36 H 1.09005 * 109.46919 * 180.02562 * 5 3 2 37 37 H 1.09005 * 109.47272 * 299.99990 * 5 3 2 38 38 H 1.08999 * 109.47461 * 60.00303 * 5 3 2 39 39 H 1.08997 * 109.47601 * 65.00526 * 6 3 2 40 40 H 1.09000 * 109.47466 * 305.00122 * 6 3 2 41 41 H 1.09007 * 109.47183 * 60.00388 * 7 6 3 42 42 H 1.08991 * 109.47476 * 300.00213 * 7 6 3 43 43 H 0.97001 * 120.00011 * 359.97438 * 10 8 7 44 44 H 1.08995 * 109.88326 * 338.79043 * 13 11 10 45 45 H 1.09002 * 109.87943 * 99.95690 * 13 11 10 46 46 H 0.96993 * 119.99704 * 179.97438 * 18 17 15 47 47 H 1.08996 * 110.37153 * 265.29327 * 23 14 13 48 48 H 1.09004 * 110.36502 * 142.96724 * 23 14 13 49 49 H 1.08002 * 126.91567 * 0.04325 * 27 26 24 50 50 H 1.07994 * 126.74720 * 180.25253 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 4.0644 2.8851 0.2511 8 6 5.5663 2.8868 0.3755 9 8 6.1770 1.8391 0.3645 10 7 6.2309 4.0528 0.4991 11 6 7.6909 4.0546 0.6195 12 1 8.1232 3.2218 0.0649 13 6 8.1204 4.0057 2.1010 14 7 9.2807 4.8965 2.2487 15 6 9.9487 5.1498 3.4169 16 1 10.7930 5.8233 3.4210 17 6 9.5408 4.5410 4.5958 18 7 8.5122 3.7198 4.5907 19 14 10.4516 4.8872 6.1896 20 1 10.3833 6.3391 6.4934 21 1 9.8241 4.1196 7.2950 22 1 11.8719 4.4775 6.0470 23 6 9.6053 5.4725 0.9310 24 6 8.2804 5.4042 0.1312 25 1 8.4717 5.3816 -0.9417 26 7 7.3978 6.5200 0.4809 27 6 7.3826 7.1784 1.6630 28 6 6.4259 8.1296 1.5524 29 7 5.9061 8.0048 0.3262 30 7 6.5017 7.0406 -0.2824 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.9988 3.1542 -1.3074 37 1 2.0698 1.5876 -2.1492 38 1 0.5488 2.1253 -1.3969 39 1 4.0030 0.9837 -0.7597 40 1 3.8571 0.8800 1.0113 41 1 3.6264 3.3458 1.1366 42 1 3.7722 3.4494 -0.6344 43 1 5.7425 4.8909 0.5075 44 1 7.3043 4.3518 2.7351 45 1 8.3979 2.9873 2.3730 46 1 8.2274 3.2942 5.4144 47 1 10.3768 4.8811 0.4381 48 1 9.9303 6.5073 1.0390 49 1 8.0106 6.9867 2.5204 50 1 6.1391 8.8481 2.3059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129337620.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:08 Heat of formation + Delta-G solvation = 59.140492 kcal Electronic energy + Delta-G solvation = -30151.342930 eV Core-core repulsion = 26215.579566 eV Total energy + Delta-G solvation = -3935.763364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.25255 -41.09622 -39.46821 -37.98500 -35.78873 -34.82395 -33.51123 -33.19127 -31.84212 -30.67724 -29.72247 -29.00254 -26.99619 -26.32849 -24.20887 -23.63562 -23.43027 -22.15326 -21.49007 -21.26926 -20.75498 -19.25456 -18.56165 -18.34883 -17.24148 -16.87611 -16.77010 -16.35196 -15.97032 -15.88526 -15.68525 -15.38140 -15.09053 -14.97566 -14.51764 -14.36147 -14.27006 -13.99849 -13.89116 -13.43594 -13.33803 -13.06889 -12.83293 -12.80256 -12.71387 -12.65434 -12.54718 -12.50161 -12.26741 -12.09515 -11.88820 -11.88295 -11.82486 -11.49347 -11.40435 -11.31789 -11.14199 -10.93218 -10.74121 -10.25437 -10.15605 -9.00978 -7.86933 -5.26228 0.66542 1.34014 1.49528 1.50804 1.57053 1.57394 1.65606 2.06452 2.47650 3.15551 3.33834 3.40789 3.52170 3.66958 3.76325 3.78033 3.92260 3.94546 4.11670 4.20012 4.26194 4.29947 4.41419 4.43810 4.46800 4.54401 4.60919 4.68016 4.71564 4.75193 4.80191 4.85160 4.89501 5.05906 5.09753 5.12292 5.18594 5.23035 5.24956 5.30963 5.33050 5.42318 5.50370 5.56403 5.58408 5.67985 5.73870 6.08727 6.37316 7.00823 7.14720 7.55295 7.68624 8.28288 9.21344 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010877 B = 0.003363 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.632239 B = 8324.429463 C = 9793.091431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.088 4.088 4 H 0.073 0.927 5 C -0.150 4.150 6 C -0.093 4.093 7 C -0.133 4.133 8 C 0.509 3.491 9 O -0.577 6.577 10 N -0.713 5.713 11 C 0.120 3.880 12 H 0.111 0.889 13 C 0.190 3.810 14 N -0.614 5.614 15 C -0.238 4.238 16 H 0.095 0.905 17 C -0.056 4.056 18 N -0.946 5.946 19 Si 0.973 3.027 20 H -0.271 1.271 21 H -0.304 1.304 22 H -0.280 1.280 23 C 0.127 3.873 24 C 0.127 3.873 25 H 0.156 0.844 26 N -0.273 5.273 27 C -0.019 4.019 28 C -0.064 4.064 29 N -0.291 5.291 30 N -0.111 5.111 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.401 0.599 44 H 0.023 0.977 45 H 0.005 0.995 46 H 0.244 0.756 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.186 0.814 50 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.630 1.481 -10.768 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.207 4.207 6 C -0.131 4.131 7 C -0.172 4.172 8 C 0.298 3.702 9 O -0.457 6.457 10 N -0.364 5.364 11 C 0.012 3.988 12 H 0.129 0.871 13 C 0.063 3.937 14 N -0.342 5.342 15 C -0.366 4.366 16 H 0.113 0.887 17 C -0.250 4.250 18 N -0.594 5.594 19 Si 0.802 3.198 20 H -0.197 1.197 21 H -0.231 1.231 22 H -0.207 1.207 23 C 0.001 3.999 24 C 0.023 3.977 25 H 0.173 0.827 26 N -0.067 5.067 27 C -0.171 4.171 28 C -0.220 4.220 29 N -0.158 5.158 30 N -0.089 5.089 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.119 0.881 42 H 0.136 0.864 43 H 0.237 0.763 44 H 0.041 0.959 45 H 0.024 0.976 46 H 0.054 0.946 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.203 0.797 50 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -10.874 0.625 -11.976 16.188 hybrid contribution 1.110 0.003 2.527 2.760 sum -9.765 0.628 -9.449 13.602 Atomic orbital electron populations 1.21804 0.94835 1.01906 1.02227 1.21570 0.96704 0.95898 1.01728 1.21161 0.93287 0.96878 0.99342 0.90816 1.21943 1.01945 1.00475 0.96305 1.21334 0.95835 0.93940 1.01967 1.21775 0.88715 1.00996 1.05716 1.21456 0.91801 0.82682 0.74278 1.90679 1.71049 1.32476 1.51480 1.45877 1.06733 1.09473 1.74332 1.22522 0.81334 0.96689 0.98268 0.87147 1.21130 0.89495 0.93099 0.89965 1.44593 1.33991 1.51778 1.03804 1.19344 1.10020 1.22802 0.84474 0.88741 1.25573 0.99046 0.99328 1.01008 1.70173 1.28818 1.33925 1.26499 0.85233 0.77717 0.77710 0.79120 1.19690 1.23106 1.20655 1.22135 0.92285 0.99772 0.85739 1.23358 0.89735 0.81462 1.03104 0.82680 1.47307 1.25250 1.23918 1.10210 1.24060 1.04051 0.96394 0.92546 1.23990 0.98278 1.02991 0.96780 1.75018 1.22298 1.11613 1.06833 1.78196 1.02648 1.08255 1.19843 0.91784 0.92483 0.92731 0.92052 0.92834 0.92213 0.92745 0.91391 0.92106 0.93335 0.88078 0.86448 0.76266 0.95910 0.97638 0.94639 0.90644 0.91008 0.79675 0.77055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 71.98 0.70 -1.41 16 2 C -0.12 -2.09 5.40 30.60 0.17 -1.93 16 3 C -0.09 -1.59 2.39 -10.79 -0.03 -1.62 16 4 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.15 -2.28 8.70 71.98 0.63 -1.65 16 6 C -0.09 -2.21 3.97 30.60 0.12 -2.09 16 7 C -0.13 -3.22 5.45 29.85 0.16 -3.05 16 8 C 0.51 17.07 7.83 87.66 0.69 17.76 16 9 O -0.58 -23.93 15.63 -3.03 -0.05 -23.98 16 10 N -0.71 -23.37 5.08 -436.92 -2.22 -25.59 16 11 C 0.12 4.19 3.18 46.18 0.15 4.34 16 12 H 0.11 3.94 7.55 -2.39 -0.02 3.93 16 13 C 0.19 8.65 4.75 86.73 0.41 9.06 16 14 N -0.61 -26.65 2.23 -692.01 -1.55 -28.20 16 15 C -0.24 -11.57 10.06 84.03 0.85 -10.72 16 16 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 17 C -0.06 -2.90 5.49 84.86 0.47 -2.43 16 18 N -0.95 -53.94 10.31 21.65 0.22 -53.72 16 19 Si 0.97 42.71 29.55 68.60 2.03 44.74 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 C 0.13 4.06 6.21 86.85 0.54 4.60 16 24 C 0.13 3.67 4.05 46.38 0.19 3.85 16 25 H 0.16 3.47 8.14 -2.38 -0.02 3.45 16 26 N -0.27 -8.35 2.44 -320.57 -0.78 -9.13 16 27 C -0.02 -0.60 10.01 83.49 0.84 0.23 16 28 C -0.06 -1.85 12.05 83.73 1.01 -0.84 16 29 N -0.29 -9.26 12.41 -58.25 -0.72 -9.99 16 30 N -0.11 -3.47 12.26 37.02 0.45 -3.02 16 31 H 0.06 0.80 6.56 -2.39 -0.02 0.78 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 0.88 6.56 -2.38 -0.02 0.86 16 37 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.07 0.88 6.56 -2.39 -0.02 0.86 16 39 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 40 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 41 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 42 H 0.12 2.29 6.56 -2.39 -0.02 2.28 16 43 H 0.40 12.54 6.80 -92.71 -0.63 11.91 16 44 H 0.02 1.19 7.27 -2.39 -0.02 1.17 16 45 H 0.01 0.30 7.51 -2.39 -0.02 0.28 16 46 H 0.24 13.97 8.31 -92.71 -0.77 13.20 16 47 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.07 2.17 7.86 -2.39 -0.02 2.15 16 49 H 0.19 6.75 6.81 -2.91 -0.02 6.73 16 50 H 0.21 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -65.11 394.19 4.57 -60.54 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.31 Total: 34.24 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 6.88 Total: 14.10 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -4.59 Total: -129.64 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -65.11 4.57 -60.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129337620.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.676 kcal (2) G-P(sol) polarization free energy of solvation -65.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds