Wall clock time and date at job start Tue Mar 31 2020 18:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47051 * 2 1 4 4 H 1.09002 * 109.47238 * 54.99862 * 3 2 1 5 5 C 1.53003 * 109.47130 * 295.00216 * 3 2 1 6 6 C 1.53000 * 109.47365 * 175.00276 * 3 2 1 7 7 C 1.53002 * 109.47266 * 185.00026 * 6 3 2 8 8 C 1.50696 * 109.47127 * 179.97438 * 7 6 3 9 9 O 1.21278 * 119.99874 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99989 * 180.02562 * 8 7 6 11 11 C 1.47023 * 125.64968 * 0.02562 * 10 8 7 12 12 C 1.54318 * 107.27401 * 178.91014 * 11 10 8 13 13 H 1.09002 * 110.72246 * 96.34428 * 12 11 10 14 14 N 1.46496 * 110.72309 * 219.44799 * 12 11 10 15 15 C 1.36945 * 119.99718 * 271.15655 * 14 12 11 16 16 H 1.07997 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99878 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.55164 * 103.09977 * 337.89820 * 12 11 10 24 24 H 1.09002 * 111.00119 * 153.48589 * 23 12 11 25 25 N 1.46494 * 111.00259 * 277.33437 * 23 12 11 26 26 C 1.35315 * 125.86455 * 84.72143 * 25 23 12 27 27 C 1.35354 * 106.17651 * 179.90388 * 26 25 23 28 28 N 1.33775 * 106.49342 * 0.34724 * 27 26 25 29 29 N 1.28638 * 108.88386 * 359.77986 * 28 27 26 30 30 C 1.47431 * 125.64879 * 179.97438 * 10 8 7 31 31 H 1.08990 * 109.47037 * 299.99988 * 1 2 3 32 32 H 1.08997 * 109.47104 * 60.00496 * 1 2 3 33 33 H 1.09004 * 109.46717 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47474 * 240.00091 * 2 1 3 35 35 H 1.08996 * 109.47274 * 120.00030 * 2 1 3 36 36 H 1.08998 * 109.47066 * 179.97438 * 5 3 2 37 37 H 1.09002 * 109.46771 * 299.99932 * 5 3 2 38 38 H 1.09000 * 109.47408 * 59.99913 * 5 3 2 39 39 H 1.08998 * 109.47063 * 64.99769 * 6 3 2 40 40 H 1.08999 * 109.46804 * 304.99642 * 6 3 2 41 41 H 1.09001 * 109.46848 * 59.99619 * 7 6 3 42 42 H 1.08998 * 109.47265 * 299.99954 * 7 6 3 43 43 H 1.09000 * 109.88031 * 59.48840 * 11 10 8 44 44 H 1.09000 * 109.87914 * 298.33108 * 11 10 8 45 45 H 0.96996 * 120.00499 * 91.15386 * 14 12 11 46 46 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 47 47 H 1.08005 * 126.91412 * 0.02562 * 26 25 23 48 48 H 1.07996 * 126.75596 * 180.11919 * 27 26 25 49 49 H 1.09002 * 110.36661 * 323.00117 * 30 10 8 50 50 H 1.09001 * 110.36207 * 85.21158 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0645 2.8851 0.2511 8 6 5.5663 2.8869 0.3754 9 8 6.1768 1.8391 0.3653 10 7 6.2308 4.0529 0.4990 11 6 5.6186 5.3893 0.5274 12 6 6.7595 6.4122 0.7100 13 1 7.0701 6.8194 -0.2523 14 7 6.3518 7.4870 1.6181 15 6 5.7288 8.6017 1.1236 16 1 5.5385 8.6887 0.0641 17 6 5.3420 9.6198 1.9842 18 7 5.5744 9.5141 3.2754 19 14 4.4928 11.1408 1.3096 20 1 4.1841 12.0712 2.4250 21 1 5.3869 11.8155 0.3346 22 1 3.2317 10.7445 0.6329 23 6 7.8957 5.5633 1.3392 24 1 8.8733 5.9858 1.1072 25 7 7.7128 5.4319 2.7868 26 6 6.9401 4.5110 3.4079 27 6 7.0629 4.7487 4.7347 28 7 7.8878 5.7946 4.8584 29 7 8.2552 6.1760 3.6861 30 6 7.6920 4.1995 0.6291 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.9981 3.1543 -1.3071 37 1 2.0698 1.5875 -2.1492 38 1 0.5489 2.1253 -1.3969 39 1 4.0029 0.9837 -0.7597 40 1 3.8571 0.8802 1.0113 41 1 3.6263 3.3458 1.1364 42 1 3.7722 3.4494 -0.6345 43 1 4.9206 5.4596 1.3617 44 1 5.0977 5.5784 -0.4112 45 1 6.5230 7.4090 2.5697 46 1 5.3043 10.2257 3.8767 47 1 6.3465 3.7399 2.9393 48 1 6.5857 4.2039 5.5358 49 1 8.1021 3.3907 1.2339 50 1 8.1611 4.2118 -0.3548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130050247.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:54 Heat of formation + Delta-G solvation = 70.518356 kcal Electronic energy + Delta-G solvation = -30142.584645 eV Core-core repulsion = 26207.314662 eV Total energy + Delta-G solvation = -3935.269983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.85761 -40.13825 -38.12830 -37.10634 -34.31895 -33.56107 -32.45850 -31.34587 -30.54532 -29.81062 -28.69370 -27.73926 -26.11528 -24.38764 -23.69875 -22.48402 -22.18225 -21.52400 -20.18721 -20.03735 -19.17091 -17.69211 -17.50194 -17.00312 -16.10700 -15.67760 -15.51723 -15.29973 -14.79832 -14.63107 -14.52324 -14.22146 -13.79820 -13.70405 -13.64268 -13.35745 -13.16216 -12.84315 -12.67852 -12.59346 -12.24457 -12.15285 -11.94678 -11.85502 -11.65959 -11.28728 -11.17114 -11.11842 -11.00511 -10.93127 -10.77506 -10.72018 -10.62115 -10.45065 -10.28150 -9.97255 -9.89356 -9.59557 -9.14856 -8.89146 -8.66632 -7.27944 -5.92780 -3.29557 2.07154 2.59994 2.69001 2.89336 3.09706 3.32957 3.37616 3.40292 4.09949 4.41076 4.44050 4.55152 4.65117 4.65343 4.86705 4.89249 4.93096 5.01638 5.12280 5.20217 5.22143 5.30203 5.32736 5.35023 5.42668 5.45964 5.46565 5.52262 5.56808 5.60934 5.66936 5.73222 5.78273 5.82168 5.85085 5.87568 5.90220 6.01831 6.02936 6.18255 6.19574 6.22294 6.26668 6.34876 6.57742 7.03338 7.45492 7.50459 8.11631 8.19921 9.02810 9.32752 9.80527 10.14842 11.26716 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009462 B = 0.003560 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.340317 B = 7863.727494 C = 9518.451582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.094 4.094 4 H 0.071 0.929 5 C -0.152 4.152 6 C -0.097 4.097 7 C -0.138 4.138 8 C 0.528 3.472 9 O -0.548 6.548 10 N -0.619 5.619 11 C 0.067 3.933 12 C 0.167 3.833 13 H 0.091 0.909 14 N -0.707 5.707 15 C -0.268 4.268 16 H 0.075 0.925 17 C 0.001 3.999 18 N -0.915 5.915 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.112 3.888 24 H 0.133 0.867 25 N -0.268 5.268 26 C -0.046 4.046 27 C -0.058 4.058 28 N -0.271 5.271 29 N -0.064 5.064 30 C 0.104 3.896 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.394 0.606 46 H 0.261 0.739 47 H 0.175 0.825 48 H 0.182 0.818 49 H 0.087 0.913 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 -16.853 -8.116 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.113 4.113 4 H 0.090 0.910 5 C -0.209 4.209 6 C -0.135 4.135 7 C -0.178 4.178 8 C 0.318 3.682 9 O -0.426 6.426 10 N -0.354 5.354 11 C -0.059 4.059 12 C 0.052 3.948 13 H 0.109 0.891 14 N -0.348 5.348 15 C -0.399 4.399 16 H 0.092 0.908 17 C -0.197 4.197 18 N -0.559 5.559 19 Si 0.740 3.260 20 H -0.215 1.215 21 H -0.209 1.209 22 H -0.210 1.210 23 C 0.007 3.993 24 H 0.151 0.849 25 N -0.062 5.062 26 C -0.196 4.196 27 C -0.215 4.215 28 N -0.137 5.137 29 N -0.044 5.044 30 C -0.020 4.020 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.231 0.769 46 H 0.071 0.929 47 H 0.192 0.808 48 H 0.199 0.801 49 H 0.106 0.894 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.563 -16.075 -7.902 18.263 hybrid contribution -1.368 0.053 -0.347 1.412 sum -4.931 -16.023 -8.249 18.684 Atomic orbital electron populations 1.21829 0.96000 1.01384 1.01939 1.21556 0.95738 0.96325 1.02035 1.21208 0.95192 0.96263 0.98620 0.91016 1.21955 1.01280 1.00620 0.97068 1.21393 0.94235 0.94643 1.03242 1.21731 0.91330 1.00015 1.04683 1.20501 0.90166 0.81867 0.75672 1.90692 1.70114 1.30781 1.51007 1.48683 1.07108 1.07068 1.72580 1.23504 0.99397 0.80612 1.02406 1.21563 0.89453 0.88340 0.95478 0.89115 1.42424 1.69656 1.16259 1.06480 1.19117 1.32485 0.95353 0.92905 0.90753 1.24855 1.00765 0.98745 0.95354 1.69696 1.50369 1.34071 1.01802 0.86247 0.79338 0.82672 0.77697 1.21503 1.20946 1.21043 1.23368 1.03884 0.97762 0.74273 0.84932 1.47152 1.30316 1.20518 1.08210 1.23410 1.02742 0.99659 0.93838 1.23461 1.03199 0.99264 0.95598 1.75106 1.13042 1.10948 1.14612 1.78395 1.18791 1.15399 0.91816 1.22474 0.82868 0.95575 1.01131 0.92752 0.92522 0.93019 0.92051 0.91984 0.92396 0.92753 0.92546 0.91317 0.91266 0.88768 0.88651 0.90432 0.91064 0.76950 0.92947 0.80757 0.80069 0.89432 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.16 0.36 -0.71 16 2 C -0.12 -0.91 5.40 -26.73 -0.14 -1.06 16 3 C -0.09 -0.78 2.39 -90.62 -0.22 -0.99 16 4 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 5 C -0.15 -1.19 8.70 37.16 0.32 -0.87 16 6 C -0.10 -0.94 3.97 -26.73 -0.11 -1.05 16 7 C -0.14 -1.42 4.65 -27.88 -0.13 -1.55 16 8 C 0.53 6.85 7.62 -10.99 -0.08 6.77 16 9 O -0.55 -8.64 16.24 5.56 0.09 -8.55 16 10 N -0.62 -7.83 2.18 -170.40 -0.37 -8.20 16 11 C 0.07 0.95 5.87 -3.07 -0.02 0.94 16 12 C 0.17 2.76 3.46 -66.10 -0.23 2.53 16 13 H 0.09 1.40 8.11 -51.93 -0.42 0.97 16 14 N -0.71 -16.24 5.12 -51.65 -0.26 -16.51 16 15 C -0.27 -6.86 9.97 -15.06 -0.15 -7.01 16 16 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 17 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 18 N -0.91 -27.10 13.06 55.49 0.72 -26.38 16 19 Si 0.91 21.29 29.55 -169.99 -5.02 16.26 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.11 1.61 4.07 -65.68 -0.27 1.35 16 24 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 25 N -0.27 -4.65 2.44 -52.58 -0.13 -4.78 16 26 C -0.05 -0.73 10.02 -17.04 -0.17 -0.90 16 27 C -0.06 -0.99 12.05 -17.73 -0.21 -1.20 16 28 N -0.27 -5.61 12.41 30.24 0.38 -5.24 16 29 N -0.06 -1.34 12.23 60.35 0.74 -0.61 16 30 C 0.10 1.24 5.88 -2.42 -0.01 1.23 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 39 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 0.89 6.57 -51.93 -0.34 0.55 16 43 H 0.08 1.27 8.03 -51.93 -0.42 0.86 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.39 10.10 5.94 -40.82 -0.24 9.86 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.18 2.48 6.80 -52.48 -0.36 2.12 16 48 H 0.18 2.39 8.06 -52.49 -0.42 1.97 16 49 H 0.09 1.09 7.76 -51.93 -0.40 0.69 16 50 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 398.50 15.07 6.01 6.01 Total: -1.00 -32.61 398.50 -7.25 -39.86 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -8.24 Total: 10.72 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.16 Total: -2.59 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 1.07 Total: -61.71 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.61 -7.25 -39.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130050247.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.383 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds