Wall clock time and date at job start Tue Mar 31 2020 18:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47051 * 2 1 4 4 H 1.09002 * 109.47238 * 54.99862 * 3 2 1 5 5 C 1.53003 * 109.47130 * 295.00216 * 3 2 1 6 6 C 1.53000 * 109.47365 * 175.00276 * 3 2 1 7 7 C 1.53002 * 109.47266 * 185.00026 * 6 3 2 8 8 C 1.50696 * 109.47127 * 179.97438 * 7 6 3 9 9 O 1.21278 * 119.99874 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99989 * 180.02562 * 8 7 6 11 11 C 1.47023 * 125.64968 * 0.02562 * 10 8 7 12 12 C 1.54318 * 107.27401 * 178.91014 * 11 10 8 13 13 H 1.09002 * 110.72246 * 96.34428 * 12 11 10 14 14 N 1.46496 * 110.72309 * 219.44799 * 12 11 10 15 15 C 1.36945 * 119.99718 * 271.15655 * 14 12 11 16 16 H 1.07997 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99878 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.55164 * 103.09977 * 337.89820 * 12 11 10 24 24 H 1.09002 * 111.00119 * 153.48589 * 23 12 11 25 25 N 1.46494 * 111.00259 * 277.33437 * 23 12 11 26 26 C 1.35315 * 125.86455 * 84.72143 * 25 23 12 27 27 C 1.35354 * 106.17651 * 179.90388 * 26 25 23 28 28 N 1.33775 * 106.49342 * 0.34724 * 27 26 25 29 29 N 1.28638 * 108.88386 * 359.77986 * 28 27 26 30 30 C 1.47431 * 125.64879 * 179.97438 * 10 8 7 31 31 H 1.08990 * 109.47037 * 299.99988 * 1 2 3 32 32 H 1.08997 * 109.47104 * 60.00496 * 1 2 3 33 33 H 1.09004 * 109.46717 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47474 * 240.00091 * 2 1 3 35 35 H 1.08996 * 109.47274 * 120.00030 * 2 1 3 36 36 H 1.08998 * 109.47066 * 179.97438 * 5 3 2 37 37 H 1.09002 * 109.46771 * 299.99932 * 5 3 2 38 38 H 1.09000 * 109.47408 * 59.99913 * 5 3 2 39 39 H 1.08998 * 109.47063 * 64.99769 * 6 3 2 40 40 H 1.08999 * 109.46804 * 304.99642 * 6 3 2 41 41 H 1.09001 * 109.46848 * 59.99619 * 7 6 3 42 42 H 1.08998 * 109.47265 * 299.99954 * 7 6 3 43 43 H 1.09000 * 109.88031 * 59.48840 * 11 10 8 44 44 H 1.09000 * 109.87914 * 298.33108 * 11 10 8 45 45 H 0.96996 * 120.00499 * 91.15386 * 14 12 11 46 46 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 47 47 H 1.08005 * 126.91412 * 0.02562 * 26 25 23 48 48 H 1.07996 * 126.75596 * 180.11919 * 27 26 25 49 49 H 1.09002 * 110.36661 * 323.00117 * 30 10 8 50 50 H 1.09001 * 110.36207 * 85.21158 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0645 2.8851 0.2511 8 6 5.5663 2.8869 0.3754 9 8 6.1768 1.8391 0.3653 10 7 6.2308 4.0529 0.4990 11 6 5.6186 5.3893 0.5274 12 6 6.7595 6.4122 0.7100 13 1 7.0701 6.8194 -0.2523 14 7 6.3518 7.4870 1.6181 15 6 5.7288 8.6017 1.1236 16 1 5.5385 8.6887 0.0641 17 6 5.3420 9.6198 1.9842 18 7 5.5744 9.5141 3.2754 19 14 4.4928 11.1408 1.3096 20 1 4.1841 12.0712 2.4250 21 1 5.3869 11.8155 0.3346 22 1 3.2317 10.7445 0.6329 23 6 7.8957 5.5633 1.3392 24 1 8.8733 5.9858 1.1072 25 7 7.7128 5.4319 2.7868 26 6 6.9401 4.5110 3.4079 27 6 7.0629 4.7487 4.7347 28 7 7.8878 5.7946 4.8584 29 7 8.2552 6.1760 3.6861 30 6 7.6920 4.1995 0.6291 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.9981 3.1543 -1.3071 37 1 2.0698 1.5875 -2.1492 38 1 0.5489 2.1253 -1.3969 39 1 4.0029 0.9837 -0.7597 40 1 3.8571 0.8802 1.0113 41 1 3.6263 3.3458 1.1364 42 1 3.7722 3.4494 -0.6345 43 1 4.9206 5.4596 1.3617 44 1 5.0977 5.5784 -0.4112 45 1 6.5230 7.4090 2.5697 46 1 5.3043 10.2257 3.8767 47 1 6.3465 3.7399 2.9393 48 1 6.5857 4.2039 5.5358 49 1 8.1021 3.3907 1.2339 50 1 8.1611 4.2118 -0.3548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130050247.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:53 Heat of formation + Delta-G solvation = 50.806722 kcal Electronic energy + Delta-G solvation = -30143.439406 eV Core-core repulsion = 26207.314662 eV Total energy + Delta-G solvation = -3936.124744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.23309 -41.24203 -39.24529 -37.90224 -35.96162 -34.89530 -33.25857 -33.06763 -31.90629 -30.97110 -29.52236 -29.10397 -26.91557 -25.87402 -25.04760 -23.58797 -23.44471 -22.70784 -21.48376 -20.73996 -20.23594 -19.40024 -18.76669 -18.15531 -17.13642 -17.08707 -16.70265 -16.32505 -16.12202 -15.94203 -15.46916 -15.37586 -15.22337 -14.90479 -14.61967 -14.37735 -14.35679 -13.93504 -13.71103 -13.62576 -13.36676 -13.08029 -12.91849 -12.77643 -12.73242 -12.61373 -12.59421 -12.47365 -12.41969 -12.14274 -11.91171 -11.83357 -11.78784 -11.46231 -11.38155 -11.28135 -11.19124 -10.91693 -10.86661 -10.27579 -9.76247 -9.15754 -7.95375 -5.30118 0.71069 1.43351 1.48896 1.51144 1.57440 1.57846 1.69489 1.84704 2.53480 2.98934 3.25668 3.49371 3.59231 3.67206 3.70503 3.84036 3.97419 4.03772 4.10272 4.15077 4.20541 4.27247 4.31455 4.34460 4.42327 4.50007 4.56254 4.59033 4.65968 4.74486 4.77587 4.83446 4.90666 4.92770 5.00976 5.08016 5.11911 5.15422 5.20248 5.26172 5.27275 5.28169 5.36528 5.50487 5.59285 5.60226 5.72542 6.20399 6.39049 7.08105 7.29527 7.60793 7.98331 8.19525 9.25779 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009462 B = 0.003560 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.340317 B = 7863.727494 C = 9518.451582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.090 4.090 4 H 0.071 0.929 5 C -0.151 4.151 6 C -0.091 4.091 7 C -0.134 4.134 8 C 0.530 3.470 9 O -0.575 6.575 10 N -0.615 5.615 11 C 0.085 3.915 12 C 0.157 3.843 13 H 0.111 0.889 14 N -0.728 5.728 15 C -0.250 4.250 16 H 0.093 0.907 17 C -0.069 4.069 18 N -0.964 5.964 19 Si 0.973 3.027 20 H -0.305 1.305 21 H -0.276 1.276 22 H -0.272 1.272 23 C 0.108 3.892 24 H 0.146 0.854 25 N -0.263 5.263 26 C -0.037 4.037 27 C -0.064 4.064 28 N -0.309 5.309 29 N -0.106 5.106 30 C 0.112 3.888 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.057 0.943 44 H 0.092 0.908 45 H 0.378 0.622 46 H 0.249 0.751 47 H 0.195 0.805 48 H 0.214 0.786 49 H 0.086 0.914 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 -18.148 -10.557 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.109 4.109 4 H 0.089 0.911 5 C -0.208 4.208 6 C -0.129 4.129 7 C -0.174 4.174 8 C 0.321 3.679 9 O -0.454 6.454 10 N -0.349 5.349 11 C -0.040 4.040 12 C 0.045 3.955 13 H 0.129 0.871 14 N -0.368 5.368 15 C -0.381 4.381 16 H 0.110 0.890 17 C -0.262 4.262 18 N -0.613 5.613 19 Si 0.802 3.198 20 H -0.232 1.232 21 H -0.202 1.202 22 H -0.197 1.197 23 C 0.005 3.995 24 H 0.164 0.836 25 N -0.057 5.057 26 C -0.189 4.189 27 C -0.222 4.222 28 N -0.174 5.174 29 N -0.085 5.085 30 C -0.012 4.012 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.075 0.925 44 H 0.110 0.890 45 H 0.212 0.788 46 H 0.057 0.943 47 H 0.212 0.788 48 H 0.230 0.770 49 H 0.105 0.895 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.462 -17.400 -10.419 20.766 hybrid contribution -1.048 0.304 0.332 1.141 sum -5.510 -17.096 -10.087 20.600 Atomic orbital electron populations 1.21819 0.95356 1.01813 1.02043 1.21553 0.96294 0.95921 1.01911 1.21168 0.94028 0.96715 0.98950 0.91074 1.21950 1.01713 1.00487 0.96694 1.21325 0.95199 0.94053 1.02305 1.21776 0.89414 1.00627 1.05553 1.20890 0.91012 0.81208 0.74777 1.90692 1.70860 1.31579 1.52300 1.48629 1.07353 1.06477 1.72468 1.23048 0.97791 0.80579 1.02625 1.21890 0.90639 0.87705 0.95260 0.87134 1.42597 1.70081 1.17452 1.06642 1.19632 1.29638 0.95357 0.93478 0.88960 1.25646 1.02986 1.02036 0.95577 1.69890 1.53467 1.34717 1.03256 0.85229 0.78808 0.79227 0.76524 1.23232 1.20169 1.19747 1.23609 1.03822 0.99105 0.72996 0.83606 1.47370 1.29626 1.19842 1.08859 1.23730 1.02069 0.99408 0.93668 1.24097 1.02498 0.98481 0.97122 1.75041 1.14624 1.12552 1.15197 1.78320 1.20692 1.16970 0.92546 1.22567 0.82617 0.93655 1.02328 0.92861 0.92180 0.92489 0.92020 0.92315 0.92390 0.92643 0.91960 0.92081 0.92404 0.88259 0.87174 0.92493 0.88994 0.78779 0.94251 0.78786 0.76953 0.89544 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.67 71.98 0.70 -1.17 16 2 C -0.12 -1.64 5.40 30.59 0.17 -1.48 16 3 C -0.09 -1.32 2.39 -10.79 -0.03 -1.34 16 4 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 5 C -0.15 -2.02 8.70 71.98 0.63 -1.39 16 6 C -0.09 -1.61 3.97 30.60 0.12 -1.49 16 7 C -0.13 -2.44 4.65 29.85 0.14 -2.30 16 8 C 0.53 12.37 7.62 87.66 0.67 13.04 16 9 O -0.57 -16.87 16.24 -3.02 -0.05 -16.92 16 10 N -0.61 -13.70 2.18 -811.41 -1.77 -15.48 16 11 C 0.09 2.19 5.87 86.73 0.51 2.70 16 12 C 0.16 4.85 3.46 46.18 0.16 5.01 16 13 H 0.11 3.02 8.11 -2.39 -0.02 3.00 16 14 N -0.73 -32.90 5.12 -317.33 -1.63 -34.53 16 15 C -0.25 -12.51 9.97 84.03 0.84 -11.67 16 16 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 17 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 18 N -0.96 -58.87 13.06 21.65 0.28 -58.59 16 19 Si 0.97 43.98 29.55 68.60 2.03 46.01 16 20 H -0.31 -14.46 7.11 99.48 0.71 -13.75 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 C 0.11 2.91 4.07 46.45 0.19 3.10 16 24 H 0.15 3.53 8.14 -2.39 -0.02 3.51 16 25 N -0.26 -8.95 2.44 -320.26 -0.78 -9.73 16 26 C -0.04 -1.15 10.02 83.49 0.84 -0.32 16 27 C -0.06 -2.16 12.05 83.73 1.01 -1.15 16 28 N -0.31 -13.05 12.41 -58.25 -0.72 -13.77 16 29 N -0.11 -4.51 12.23 37.02 0.45 -4.06 16 30 C 0.11 2.33 5.88 86.92 0.51 2.84 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.69 6.56 -2.39 -0.02 0.67 16 33 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.77 6.57 -2.39 -0.02 0.75 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.76 6.57 -2.39 -0.02 0.75 16 39 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 40 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 41 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.11 1.71 6.57 -2.39 -0.02 1.69 16 43 H 0.06 1.75 8.03 -2.39 -0.02 1.73 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.38 19.61 5.94 -92.71 -0.55 19.06 16 46 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.20 5.14 6.80 -2.91 -0.02 5.12 16 48 H 0.21 5.35 8.06 -2.91 -0.02 5.33 16 49 H 0.09 1.92 7.76 -2.39 -0.02 1.90 16 50 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -72.39 398.50 5.10 -67.29 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: 0.38 Total: 38.71 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 6.91 Total: 1.06 kcal Atomic # 7 Polarization: -131.99 SS G_CDS: -4.17 Total: -136.15 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.05 Total: -16.92 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -72.39 5.10 -67.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130050247.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.096 kcal (2) G-P(sol) polarization free energy of solvation -72.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds