Wall clock time and date at job start Tue Mar 31 2020 19:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47329 * 2 1 4 4 N 1.46498 * 109.47178 * 179.97438 * 3 2 1 5 5 C 1.34815 * 126.59366 * 125.00774 * 4 3 2 6 6 C 1.36598 * 106.83796 * 179.97438 * 5 4 3 7 7 C 1.47525 * 125.76584 * 179.73181 * 6 5 4 8 8 O 1.21592 * 120.00085 * 7.26431 * 7 6 5 9 9 N 1.34782 * 119.99635 * 187.26520 * 7 6 5 10 10 C 1.46928 * 120.63126 * 7.09224 * 9 7 6 11 11 C 1.53613 * 108.53989 * 126.37149 * 10 9 7 12 12 C 1.53039 * 109.24687 * 54.85678 * 11 10 9 13 13 H 1.08998 * 109.46189 * 178.48712 * 12 11 10 14 14 C 1.52998 * 109.44828 * 58.52044 * 12 11 10 15 15 C 1.53043 * 109.53523 * 298.50939 * 12 11 10 16 16 H 1.08993 * 109.50114 * 301.41180 * 15 12 11 17 17 C 1.53002 * 109.52411 * 181.32934 * 15 12 11 18 18 N 1.46494 * 109.47412 * 175.14832 * 17 15 12 19 19 C 1.36930 * 120.00128 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00390 * 359.97438 * 19 18 17 21 21 C 1.38817 * 120.00190 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99564 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00340 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46700 * 59.99867 * 23 21 19 25 25 H 1.48504 * 109.47047 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47091 * 300.00450 * 23 21 19 27 27 C 1.46922 * 120.62611 * 187.37874 * 9 7 6 28 28 N 1.34394 * 108.45976 * 359.97438 * 6 5 4 29 29 N 1.28766 * 109.52561 * 359.97438 * 28 6 5 30 30 H 1.09003 * 109.47150 * 59.99960 * 1 2 3 31 31 H 1.09005 * 109.47379 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47091 * 299.99772 * 1 2 3 33 33 H 1.09006 * 109.46867 * 240.00103 * 2 1 3 34 34 H 1.08999 * 109.47146 * 120.00570 * 2 1 3 35 35 H 1.09009 * 109.46586 * 60.00349 * 3 2 1 36 36 H 1.08999 * 109.47472 * 300.00370 * 3 2 1 37 37 H 1.08001 * 126.58245 * 359.97438 * 5 4 3 38 38 H 1.09001 * 109.58492 * 246.20296 * 10 9 7 39 39 H 1.08995 * 109.58403 * 6.62984 * 10 9 7 40 40 H 1.09003 * 109.63974 * 294.86340 * 11 10 9 41 41 H 1.09010 * 109.43242 * 174.72717 * 11 10 9 42 42 H 1.08998 * 109.47300 * 299.94410 * 14 12 11 43 43 H 1.09001 * 109.47335 * 59.93977 * 14 12 11 44 44 H 1.08996 * 109.47175 * 179.97438 * 14 12 11 45 45 H 1.09007 * 109.47147 * 295.15103 * 17 15 12 46 46 H 1.09006 * 109.46685 * 55.14335 * 17 15 12 47 47 H 0.97000 * 119.99569 * 359.97438 * 18 17 15 48 48 H 0.97003 * 119.99658 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.59352 * 353.36280 * 27 9 7 50 50 H 1.08998 * 109.59230 * 113.79740 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3091 2.0632 -0.8857 6 6 5.5945 1.7989 -0.5066 7 6 6.8109 2.2734 -1.1933 8 8 6.7213 3.0696 -2.1079 9 7 8.0215 1.8243 -0.8068 10 6 8.1386 0.7497 0.1883 11 6 9.0167 -0.3658 -0.3986 12 6 10.3556 0.2273 -0.8431 13 1 10.9918 -0.5660 -1.2355 14 6 11.0431 0.8869 0.3540 15 6 10.1149 1.2741 -1.9332 16 1 9.6027 0.8104 -2.7762 17 6 11.4560 1.8431 -2.4008 18 7 11.2337 2.7586 -3.5226 19 6 12.2959 3.3918 -4.1105 20 1 13.2977 3.2166 -3.7470 21 6 12.0853 4.2590 -5.1739 22 7 10.8644 4.4721 -5.6173 23 14 13.5343 5.1233 -5.9755 24 1 14.4754 4.1112 -6.5189 25 1 13.0458 5.9877 -7.0798 26 1 14.2336 5.9574 -4.9654 27 6 9.2492 2.4045 -1.3679 28 7 5.5636 1.0290 0.5945 29 7 4.3404 0.7984 0.9243 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9562 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 3.9968 2.6559 -1.7329 38 1 8.5981 1.1408 1.0961 39 1 7.1489 0.3550 0.4180 40 1 8.5149 -0.8142 -1.2560 41 1 9.1907 -1.1280 0.3611 42 1 10.4073 1.6805 0.7463 43 1 11.2146 0.1415 1.1307 44 1 11.9970 1.3091 0.0380 45 1 11.9280 2.3826 -1.5796 46 1 12.1050 1.0277 -2.7204 47 1 10.3339 2.9157 -3.8493 48 1 10.7171 5.0784 -6.3601 49 1 8.9926 3.1019 -2.1653 50 1 9.7974 2.9277 -0.5845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133199741.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:54 Heat of formation + Delta-G solvation = 50.743886 kcal Electronic energy + Delta-G solvation = -29477.525226 eV Core-core repulsion = 25541.397758 eV Total energy + Delta-G solvation = -3936.127468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.34297 -41.24751 -39.20303 -37.01375 -36.56323 -34.91188 -33.57999 -33.47559 -32.12220 -31.28310 -28.72305 -28.20884 -27.13555 -26.06241 -24.89955 -24.09065 -23.59719 -22.58909 -22.36031 -21.07805 -19.68711 -18.93132 -18.42534 -17.57207 -17.24921 -17.07986 -16.75021 -16.35677 -16.03022 -15.83708 -15.71755 -15.64146 -15.28179 -14.95172 -14.57423 -14.47803 -14.39237 -14.10573 -13.78282 -13.65702 -13.45849 -13.05246 -13.01302 -12.89567 -12.81354 -12.64870 -12.47624 -12.40746 -12.17837 -12.13375 -11.90346 -11.87803 -11.75225 -11.64928 -11.40029 -11.27590 -11.21732 -10.90581 -10.77715 -10.39060 -9.55763 -8.97685 -7.91695 -5.21944 0.10903 0.55147 1.06224 1.46321 1.50812 1.56872 1.92366 2.16547 2.57423 3.07043 3.29796 3.40511 3.63741 3.75710 3.83027 3.87444 3.88867 3.93207 4.09697 4.14353 4.17323 4.24067 4.32803 4.37783 4.47377 4.49029 4.57715 4.59878 4.69877 4.79215 4.81482 4.82891 4.89328 4.96971 5.11320 5.12362 5.14259 5.17955 5.21588 5.27500 5.31495 5.32662 5.42242 5.47733 5.50676 5.57596 5.65899 6.28769 6.34731 6.81375 7.08613 7.34151 8.10879 8.33661 9.31641 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.002538 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.904643 B =11028.334728 C =12412.551218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.110 3.890 4 N -0.344 5.344 5 C 0.108 3.892 6 C -0.118 4.118 7 C 0.590 3.410 8 O -0.577 6.577 9 N -0.593 5.593 10 C 0.083 3.917 11 C -0.120 4.120 12 C -0.079 4.079 13 H 0.081 0.919 14 C -0.148 4.148 15 C -0.089 4.089 16 H 0.050 0.950 17 C 0.161 3.839 18 N -0.747 5.747 19 C -0.245 4.245 20 H 0.079 0.921 21 C -0.081 4.081 22 N -0.971 5.971 23 Si 0.977 3.023 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.276 1.276 27 C 0.130 3.870 28 N -0.215 5.215 29 N -0.080 5.080 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.136 0.864 37 H 0.230 0.770 38 H 0.080 0.920 39 H 0.128 0.872 40 H 0.054 0.946 41 H 0.105 0.895 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.032 0.968 46 H 0.024 0.976 47 H 0.371 0.629 48 H 0.250 0.750 49 H 0.056 0.944 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.863 -12.012 17.504 29.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.009 4.009 4 N -0.129 5.129 5 C -0.050 4.050 6 C -0.257 4.257 7 C 0.377 3.623 8 O -0.456 6.456 9 N -0.324 5.324 10 C -0.039 4.039 11 C -0.158 4.158 12 C -0.098 4.098 13 H 0.099 0.901 14 C -0.205 4.205 15 C -0.109 4.109 16 H 0.069 0.931 17 C 0.034 3.966 18 N -0.390 5.390 19 C -0.377 4.377 20 H 0.097 0.903 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.806 3.194 24 H -0.202 1.202 25 H -0.223 1.223 26 H -0.202 1.202 27 C 0.008 3.992 28 N -0.088 5.088 29 N -0.060 5.060 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.246 0.754 38 H 0.098 0.902 39 H 0.145 0.855 40 H 0.072 0.928 41 H 0.123 0.877 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.042 0.958 47 H 0.203 0.797 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.751 -12.443 18.298 30.336 hybrid contribution 0.443 1.424 -1.943 2.449 sum -20.308 -11.019 16.355 28.308 Atomic orbital electron populations 1.21681 0.92328 1.03105 1.03263 1.21781 0.98137 0.94180 1.03093 1.22683 0.69827 1.00732 1.07658 1.50795 1.10043 1.33577 1.18516 1.23761 0.89188 0.95974 0.96098 1.21243 0.94505 1.09979 0.99983 1.17305 0.82688 0.80470 0.81789 1.90842 1.86653 1.37193 1.30953 1.48002 1.04552 1.37385 1.42441 1.22793 1.04364 0.86688 0.90012 1.22002 0.94610 0.97721 1.01507 1.21069 0.97320 0.96585 0.94839 0.90063 1.21949 1.00143 1.01075 0.97366 1.21532 0.95269 0.96091 0.97994 0.93133 1.20852 0.94725 0.91793 0.89222 1.42664 1.06396 1.52302 1.37618 1.19633 0.89102 1.18550 1.10424 0.90341 1.25665 0.99106 1.02047 1.00431 1.69870 1.21126 1.41464 1.29756 0.85156 0.78472 0.78143 0.77643 1.20204 1.22288 1.20211 1.21465 0.84117 0.95603 0.98057 1.74339 1.12932 1.10811 1.10710 1.81865 0.93581 1.18024 1.12507 0.91174 0.91811 0.91293 0.91945 0.91441 0.86561 0.84573 0.75380 0.90173 0.85465 0.92763 0.87670 0.92836 0.90310 0.92930 0.95050 0.95791 0.79748 0.94115 0.92524 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 9.91 71.98 0.71 0.23 16 2 C -0.13 -0.93 6.14 30.59 0.19 -0.75 16 3 C 0.11 0.69 6.54 86.38 0.56 1.26 16 4 N -0.34 -5.44 3.69 -347.09 -1.28 -6.72 16 5 C 0.11 2.08 11.28 83.85 0.95 3.03 16 6 C -0.12 -3.19 6.70 40.82 0.27 -2.91 16 7 C 0.59 20.56 7.67 86.69 0.67 21.23 16 8 O -0.58 -24.80 16.30 -4.00 -0.07 -24.86 16 9 N -0.59 -19.27 2.97 -821.84 -2.44 -21.71 16 10 C 0.08 2.07 5.64 86.50 0.49 2.56 16 11 C -0.12 -2.68 5.64 30.81 0.17 -2.51 16 12 C -0.08 -2.03 2.71 -10.77 -0.03 -2.06 16 13 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 14 C -0.15 -3.37 8.11 71.98 0.58 -2.79 16 15 C -0.09 -3.16 2.15 -10.71 -0.02 -3.18 16 16 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 17 C 0.16 6.75 5.19 86.38 0.45 7.20 16 18 N -0.75 -40.68 5.38 -343.45 -1.85 -42.53 16 19 C -0.25 -14.40 9.99 84.04 0.84 -13.56 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 21 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 22 N -0.97 -63.29 13.06 21.65 0.28 -63.01 16 23 Si 0.98 48.14 29.55 68.60 2.03 50.17 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 27 C 0.13 4.86 5.06 86.37 0.44 5.30 16 28 N -0.21 -5.44 8.79 -50.00 -0.44 -5.88 16 29 N -0.08 -1.75 13.65 37.02 0.51 -1.25 16 30 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 36 H 0.14 0.11 8.08 -2.39 -0.02 0.09 16 37 H 0.23 3.15 8.06 -2.91 -0.02 3.12 16 38 H 0.08 1.81 6.69 -2.39 -0.02 1.79 16 39 H 0.13 3.14 4.11 -37.95 -0.16 2.99 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.05 1.27 4.96 -2.39 -0.01 1.25 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.30 6.57 -2.39 -0.02 1.29 16 45 H 0.03 1.29 6.73 -2.38 -0.02 1.27 16 46 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.37 22.10 6.89 -92.71 -0.64 21.46 16 48 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 49 H 0.06 2.66 6.20 -2.39 -0.01 2.65 16 50 H 0.07 2.66 6.69 -2.39 -0.02 2.65 16 Total: -1.00 -80.13 391.77 3.65 -76.48 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.17 Total: 30.67 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 6.74 Total: 8.64 kcal Atomic # 7 Polarization: -135.88 SS G_CDS: -5.22 Total: -141.10 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.07 Total: -24.86 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -80.13 3.65 -76.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133199741.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.224 kcal (2) G-P(sol) polarization free energy of solvation -80.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds