Wall clock time and date at job start Tue Mar 31 2020 19:26:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.36126 * 117.00026 * 2 1
4 4 C 1.38438 * 120.79668 * 359.72160 * 3 2 1
5 5 N 1.32596 * 119.22786 * 179.73922 * 4 3 2
6 6 C 1.32378 * 120.96625 * 0.52617 * 5 4 3
7 7 N 1.38620 * 119.13091 * 179.72866 * 6 5 4
8 8 C 1.46957 * 111.00173 * 123.82266 * 7 6 5
9 9 C 1.53057 * 109.36527 * 176.81575 * 8 7 6
10 10 N 1.46957 * 109.36549 * 58.40029 * 9 8 7
11 11 C 1.46900 * 110.99819 * 176.81638 * 10 9 8
12 12 C 1.50699 * 109.47457 * 58.99053 * 11 10 9
13 13 H 1.08001 * 119.99870 * 4.98362 * 12 11 10
14 14 C 1.37880 * 120.00087 * 184.98902 * 12 11 10
15 15 N 1.31506 * 120.00070 * 179.97438 * 14 12 11
16 16 Si 1.86800 * 119.99788 * 359.97438 * 14 12 11
17 17 H 1.48505 * 109.47243 * 89.99949 * 16 14 12
18 18 H 1.48500 * 109.46972 * 209.99911 * 16 14 12
19 19 H 1.48499 * 109.47388 * 330.00337 * 16 14 12
20 20 C 1.46958 * 110.87735 * 300.67818 * 10 9 8
21 21 C 1.46962 * 111.00064 * 0.02562 * 7 6 5
22 22 N 1.32456 * 121.74140 * 359.75576 * 6 5 4
23 23 C 1.32861 * 120.67314 * 359.97029 * 22 6 5
24 24 N 1.38747 * 120.50945 * 180.02562 * 23 22 6
25 25 C 1.46502 * 120.00162 * 359.97438 * 24 23 22
26 26 C 1.53007 * 109.46875 * 84.99720 * 25 24 23
27 27 C 1.52997 * 109.47570 * 205.00011 * 25 24 23
28 28 H 1.08999 * 109.46798 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47305 * 60.00133 * 1 2 3
30 30 H 1.09000 * 109.46873 * 299.99867 * 1 2 3
31 31 H 1.07998 * 120.38241 * 0.02562 * 4 3 2
32 32 H 1.08997 * 109.48775 * 296.78017 * 8 7 6
33 33 H 1.09002 * 109.48946 * 56.84575 * 8 7 6
34 34 H 1.09002 * 109.48280 * 298.43141 * 9 8 7
35 35 H 1.08995 * 109.49027 * 178.36974 * 9 8 7
36 36 H 1.08999 * 109.47132 * 178.99133 * 11 10 9
37 37 H 1.08997 * 109.46553 * 298.98651 * 11 10 9
38 38 H 0.97004 * 120.00239 * 180.02562 * 15 14 12
39 39 H 1.09001 * 109.49610 * 299.35337 * 20 10 9
40 40 H 1.09002 * 109.48654 * 179.28898 * 20 10 9
41 41 H 1.09008 * 109.48191 * 303.15715 * 21 7 6
42 42 H 1.09000 * 109.49040 * 63.19530 * 21 7 6
43 43 H 0.97006 * 120.00090 * 179.97438 * 24 23 22
44 44 H 1.09003 * 109.47221 * 325.00404 * 25 24 23
45 45 H 1.09003 * 109.46638 * 60.00327 * 26 25 24
46 46 H 1.09008 * 109.46891 * 180.02562 * 26 25 24
47 47 H 1.08994 * 109.47160 * 300.00467 * 26 25 24
48 48 H 1.08995 * 109.47040 * 59.99992 * 27 25 24
49 49 H 1.09001 * 109.47213 * 180.02562 * 27 25 24
50 50 H 1.09003 * 109.47169 * 300.00424 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0470 1.2129 0.0000
4 6 1.3092 2.3843 -0.0058
5 7 1.9433 3.5488 -0.0003
6 6 3.2659 3.6042 0.0001
7 7 3.8895 4.8423 0.0001
8 6 4.8081 4.9693 1.1402
9 6 5.5335 6.3146 1.0599
10 7 4.5451 7.4021 1.0601
11 6 5.2058 8.7141 1.0600
12 6 6.0854 8.8336 -0.1578
13 1 6.0861 8.0512 -0.9022
14 6 6.8893 9.9417 -0.3215
15 7 7.6573 10.0458 -1.3840
16 14 6.8876 11.2953 0.9659
17 1 7.9217 11.0045 1.9913
18 1 7.1868 12.5967 0.3162
19 1 5.5529 11.3606 1.6137
20 6 3.6265 7.2750 -0.0800
21 6 2.9010 5.9298 0.0003
22 7 4.0093 2.5079 -0.0001
23 6 3.4439 1.3056 -0.0001
24 7 4.2258 0.1595 0.0003
25 6 5.6867 0.2694 0.0001
26 6 6.1860 0.4336 1.4371
27 6 6.2934 -0.9962 -0.6091
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 0.5138 0.8900
31 1 0.2298 2.3500 -0.0100
32 1 4.2426 4.9160 2.0705
33 1 5.5379 4.1602 1.1110
34 1 6.1207 6.3569 0.1425
35 1 6.1940 6.4235 1.9201
36 1 4.4516 9.5007 1.0420
37 1 5.8141 8.8144 1.9589
38 1 8.2231 10.8252 -1.4990
39 1 4.1920 7.3283 -1.0104
40 1 2.8967 8.0841 -0.0509
41 1 2.2405 5.8209 -0.8600
42 1 2.3136 5.8872 0.9175
43 1 3.8052 -0.7146 0.0006
44 1 5.9859 1.1359 -0.5897
45 1 5.8868 -0.4329 2.0268
46 1 7.2729 0.5159 1.4369
47 1 5.7538 1.3352 1.8710
48 1 5.9378 -1.1131 -1.6327
49 1 7.3804 -0.9145 -0.6088
50 1 5.9943 -1.8627 -0.0193
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001165055754.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:26:26
Heat of formation + Delta-G solvation = 46.705720 kcal
Electronic energy + Delta-G solvation = -29839.251659 eV
Core-core repulsion = 25902.949083 eV
Total energy + Delta-G solvation = -3936.302576 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.33681 -39.21834 -38.11167 -37.35306 -35.04948 -33.59769 -32.38514 -31.46907
-30.40526 -29.35464 -28.33482 -27.41665 -27.31457 -25.15743 -24.06961 -22.76597
-22.61539 -21.26311 -21.07630 -19.22353 -18.48033 -17.97763 -17.65406 -16.75284
-16.21626 -16.12383 -15.47987 -15.05239 -14.83211 -14.57894 -14.40557 -14.26934
-14.12010 -13.98653 -13.84474 -13.46701 -13.13027 -12.78080 -12.50981 -12.47144
-12.32366 -12.20238 -11.99540 -11.85819 -11.69847 -11.31966 -11.22517 -11.15414
-10.99072 -10.92383 -10.69733 -10.54573 -10.29117 -10.14919 -9.97447 -9.73416
-9.46715 -9.05322 -8.56805 -8.48844 -7.58782 -7.20432 -6.07382 -4.07311
1.10877 1.34084 2.83086 2.97874 3.29554 3.37418 3.41335 3.49799
3.89155 4.22168 4.41988 4.58722 4.65512 4.72919 4.86424 4.87141
4.89642 4.96559 5.07901 5.16536 5.18428 5.25661 5.38010 5.42636
5.53329 5.58432 5.61649 5.71134 5.78652 5.83918 5.87193 5.93896
6.02276 6.12405 6.15654 6.31481 6.56237 6.59321 6.71384 6.77535
6.84970 6.90068 7.03784 7.09163 7.10356 7.41091 7.57054 7.61715
8.04746 8.08112 8.40091 8.47523 8.96596 9.55201 11.05497
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.015885 B = 0.002797 C = 0.002492
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1762.281790 B =10007.091140 C =11232.567688
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.317 6.317
3 C -0.082 4.082
4 C 0.117 3.883
5 N -0.561 5.561
6 C 0.515 3.485
7 N -0.454 5.454
8 C 0.075 3.925
9 C 0.061 3.939
10 N -0.538 5.538
11 C 0.155 3.845
12 C -0.551 4.551
13 H 0.077 0.923
14 C 0.072 3.928
15 N -0.898 5.898
16 Si 0.879 3.121
17 H -0.277 1.277
18 H -0.288 1.288
19 H -0.264 1.264
20 C 0.058 3.942
21 C 0.078 3.922
22 N -0.556 5.556
23 C 0.456 3.544
24 N -0.702 5.702
25 C 0.145 3.855
26 C -0.161 4.161
27 C -0.160 4.160
28 H 0.098 0.902
29 H 0.053 0.947
30 H 0.053 0.947
31 H 0.163 0.837
32 H 0.043 0.957
33 H 0.088 0.912
34 H 0.060 0.940
35 H 0.075 0.925
36 H 0.028 0.972
37 H 0.026 0.974
38 H 0.263 0.737
39 H 0.055 0.945
40 H 0.075 0.925
41 H 0.083 0.917
42 H 0.054 0.946
43 H 0.412 0.588
44 H 0.094 0.906
45 H 0.051 0.949
46 H 0.065 0.935
47 H 0.061 0.939
48 H 0.060 0.940
49 H 0.073 0.927
50 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.282 -23.880 4.344 26.765
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.229 6.229
3 C -0.137 4.137
4 C -0.046 4.046
5 N -0.286 5.286
6 C 0.158 3.842
7 N -0.174 5.174
8 C -0.051 4.051
9 C -0.067 4.067
10 N -0.262 5.262
11 C 0.028 3.972
12 C -0.590 4.590
13 H 0.095 0.905
14 C -0.130 4.130
15 N -0.536 5.536
16 Si 0.706 3.294
17 H -0.202 1.202
18 H -0.214 1.214
19 H -0.189 1.189
20 C -0.071 4.071
21 C -0.049 4.049
22 N -0.285 5.285
23 C 0.207 3.793
24 N -0.337 5.337
25 C 0.040 3.960
26 C -0.220 4.220
27 C -0.218 4.218
28 H 0.117 0.883
29 H 0.072 0.928
30 H 0.072 0.928
31 H 0.180 0.820
32 H 0.061 0.939
33 H 0.106 0.894
34 H 0.079 0.921
35 H 0.094 0.906
36 H 0.046 0.954
37 H 0.044 0.956
38 H 0.073 0.927
39 H 0.073 0.927
40 H 0.094 0.906
41 H 0.101 0.899
42 H 0.072 0.928
43 H 0.249 0.751
44 H 0.112 0.888
45 H 0.070 0.930
46 H 0.084 0.916
47 H 0.080 0.920
48 H 0.079 0.921
49 H 0.092 0.908
50 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -10.416 -22.971 4.274 25.582
hybrid contribution -0.630 -0.202 0.282 0.719
sum -11.046 -23.173 4.556 26.072
Atomic orbital electron populations
1.22989 0.78572 1.03802 1.01218 1.85971 1.21041 1.25247 1.90658
1.19811 0.92141 0.87100 1.14634 1.22794 1.00210 0.86220 0.95333
1.68329 1.09653 1.28050 1.22600 1.20749 0.84497 0.89515 0.89412
1.58644 1.18534 0.98532 1.41696 1.22328 0.94537 0.99734 0.88525
1.22013 0.94001 0.88245 1.02490 1.62662 1.18656 1.04104 1.40743
1.20151 0.93909 0.86455 0.96642 1.21710 1.23685 1.06759 1.06822
0.90467 1.24970 0.94777 0.97989 0.95299 1.69931 1.26304 1.29607
1.27808 0.86805 0.79086 0.81576 0.81962 1.20238 1.21381 1.18879
1.22078 0.95955 0.94397 0.94695 1.22172 0.92170 0.88384 1.02183
1.67533 1.39036 0.96015 1.25909 1.17724 0.84479 0.87365 0.89740
1.44569 1.05410 1.04695 1.79029 1.20958 0.78571 0.99400 0.97072
1.22188 1.01305 1.02130 0.96384 1.22076 1.01692 0.96960 1.01076
0.88322 0.92816 0.92846 0.81980 0.93878 0.89405 0.92141 0.90632
0.95370 0.95609 0.92719 0.92722 0.90618 0.89907 0.92774 0.75075
0.88838 0.92995 0.91636 0.91966 0.92081 0.90786 0.92331
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.18 9.84 101.05 0.99 1.17 16
2 O -0.32 -3.07 9.85 -20.14 -0.20 -3.27 16
3 C -0.08 -0.99 6.74 -38.85 -0.26 -1.25 16
4 C 0.12 1.45 10.29 -17.15 -0.18 1.27 16
5 N -0.56 -8.65 8.69 -13.88 -0.12 -8.77 16
6 C 0.52 8.58 7.18 -322.69 -2.32 6.27 16
7 N -0.45 -8.06 4.78 -175.20 -0.84 -8.90 16
8 C 0.07 1.28 5.46 -3.76 -0.02 1.26 16
9 C 0.06 1.21 5.24 -3.76 -0.02 1.19 16
10 N -0.54 -11.30 4.92 -235.91 -1.16 -12.46 16
11 C 0.16 3.71 4.21 -4.98 -0.02 3.69 16
12 C -0.55 -15.30 8.21 -34.44 -0.28 -15.58 16
13 H 0.08 2.35 6.07 -52.49 -0.32 2.03 16
14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16
15 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16
16 Si 0.88 21.39 27.37 -169.99 -4.65 16.74 16
17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
18 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16
19 H -0.26 -6.19 6.69 56.52 0.38 -5.81 16
20 C 0.06 1.14 5.32 -3.77 -0.02 1.12 16
21 C 0.08 1.35 4.77 -3.76 -0.02 1.33 16
22 N -0.56 -8.61 8.63 -13.00 -0.11 -8.73 16
23 C 0.46 6.01 7.51 -154.55 -1.16 4.85 16
24 N -0.70 -7.23 5.21 -53.65 -0.28 -7.51 16
25 C 0.14 1.38 3.21 -67.93 -0.22 1.17 16
26 C -0.16 -1.51 9.50 37.16 0.35 -1.15 16
27 C -0.16 -1.11 9.38 37.16 0.35 -0.76 16
28 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16
29 H 0.05 0.29 7.70 -51.93 -0.40 -0.11 16
30 H 0.05 0.28 7.72 -51.93 -0.40 -0.12 16
31 H 0.16 1.46 6.44 -52.49 -0.34 1.12 16
32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.09 1.43 7.64 -51.93 -0.40 1.04 16
34 H 0.06 1.37 6.62 -51.93 -0.34 1.03 16
35 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16
36 H 0.03 0.68 7.52 -51.93 -0.39 0.29 16
37 H 0.03 0.62 7.30 -51.93 -0.38 0.24 16
38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
39 H 0.05 1.23 6.78 -51.93 -0.35 0.88 16
40 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16
41 H 0.08 1.38 7.80 -51.92 -0.41 0.98 16
42 H 0.05 0.93 8.03 -51.93 -0.42 0.52 16
43 H 0.41 3.54 8.04 -40.82 -0.33 3.22 16
44 H 0.09 1.12 7.57 -51.93 -0.39 0.72 16
45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
46 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16
47 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
50 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
LS Contribution 391.56 15.07 5.90 5.90
Total: -1.00 -32.20 391.56 -11.85 -44.05
By element:
Atomic # 1 Polarization: 11.30 SS G_CDS: -8.25 Total: 3.05 kcal
Atomic # 6 Polarization: 9.47 SS G_CDS: -2.92 Total: 6.56 kcal
Atomic # 7 Polarization: -71.30 SS G_CDS: -1.74 Total: -73.03 kcal
Atomic # 8 Polarization: -3.07 SS G_CDS: -0.20 Total: -3.27 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -4.65 Total: 16.74 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -32.20 -11.85 -44.05 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001165055754.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.758 kcal
(2) G-P(sol) polarization free energy of solvation -32.201 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.557 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.851 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.706 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds