Wall clock time and date at job start Tue Mar 31 2020 19:26:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.36126 * 117.00026 * 2 1
4 4 C 1.38438 * 120.79668 * 359.72160 * 3 2 1
5 5 N 1.32596 * 119.22786 * 179.73922 * 4 3 2
6 6 C 1.32378 * 120.96625 * 0.52617 * 5 4 3
7 7 N 1.38620 * 119.13091 * 179.72866 * 6 5 4
8 8 C 1.46957 * 111.00173 * 123.82266 * 7 6 5
9 9 C 1.53057 * 109.36527 * 176.81575 * 8 7 6
10 10 N 1.46957 * 109.36549 * 58.40029 * 9 8 7
11 11 C 1.46900 * 110.99819 * 176.81638 * 10 9 8
12 12 C 1.50699 * 109.47457 * 58.99053 * 11 10 9
13 13 H 1.08001 * 119.99870 * 4.98362 * 12 11 10
14 14 C 1.37880 * 120.00087 * 184.98902 * 12 11 10
15 15 N 1.31506 * 120.00070 * 179.97438 * 14 12 11
16 16 Si 1.86800 * 119.99788 * 359.97438 * 14 12 11
17 17 H 1.48505 * 109.47243 * 89.99949 * 16 14 12
18 18 H 1.48500 * 109.46972 * 209.99911 * 16 14 12
19 19 H 1.48499 * 109.47388 * 330.00337 * 16 14 12
20 20 C 1.46958 * 110.87735 * 300.67818 * 10 9 8
21 21 C 1.46962 * 111.00064 * 0.02562 * 7 6 5
22 22 N 1.32456 * 121.74140 * 359.75576 * 6 5 4
23 23 C 1.32861 * 120.67314 * 359.97029 * 22 6 5
24 24 N 1.38747 * 120.50945 * 180.02562 * 23 22 6
25 25 C 1.46502 * 120.00162 * 359.97438 * 24 23 22
26 26 C 1.53007 * 109.46875 * 84.99720 * 25 24 23
27 27 C 1.52997 * 109.47570 * 205.00011 * 25 24 23
28 28 H 1.08999 * 109.46798 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47305 * 60.00133 * 1 2 3
30 30 H 1.09000 * 109.46873 * 299.99867 * 1 2 3
31 31 H 1.07998 * 120.38241 * 0.02562 * 4 3 2
32 32 H 1.08997 * 109.48775 * 296.78017 * 8 7 6
33 33 H 1.09002 * 109.48946 * 56.84575 * 8 7 6
34 34 H 1.09002 * 109.48280 * 298.43141 * 9 8 7
35 35 H 1.08995 * 109.49027 * 178.36974 * 9 8 7
36 36 H 1.08999 * 109.47132 * 178.99133 * 11 10 9
37 37 H 1.08997 * 109.46553 * 298.98651 * 11 10 9
38 38 H 0.97004 * 120.00239 * 180.02562 * 15 14 12
39 39 H 1.09001 * 109.49610 * 299.35337 * 20 10 9
40 40 H 1.09002 * 109.48654 * 179.28898 * 20 10 9
41 41 H 1.09008 * 109.48191 * 303.15715 * 21 7 6
42 42 H 1.09000 * 109.49040 * 63.19530 * 21 7 6
43 43 H 0.97006 * 120.00090 * 179.97438 * 24 23 22
44 44 H 1.09003 * 109.47221 * 325.00404 * 25 24 23
45 45 H 1.09003 * 109.46638 * 60.00327 * 26 25 24
46 46 H 1.09008 * 109.46891 * 180.02562 * 26 25 24
47 47 H 1.08994 * 109.47160 * 300.00467 * 26 25 24
48 48 H 1.08995 * 109.47040 * 59.99992 * 27 25 24
49 49 H 1.09001 * 109.47213 * 180.02562 * 27 25 24
50 50 H 1.09003 * 109.47169 * 300.00424 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0470 1.2129 0.0000
4 6 1.3092 2.3843 -0.0058
5 7 1.9433 3.5488 -0.0003
6 6 3.2659 3.6042 0.0001
7 7 3.8895 4.8423 0.0001
8 6 4.8081 4.9693 1.1402
9 6 5.5335 6.3146 1.0599
10 7 4.5451 7.4021 1.0601
11 6 5.2058 8.7141 1.0600
12 6 6.0854 8.8336 -0.1578
13 1 6.0861 8.0512 -0.9022
14 6 6.8893 9.9417 -0.3215
15 7 7.6573 10.0458 -1.3840
16 14 6.8876 11.2953 0.9659
17 1 7.9217 11.0045 1.9913
18 1 7.1868 12.5967 0.3162
19 1 5.5529 11.3606 1.6137
20 6 3.6265 7.2750 -0.0800
21 6 2.9010 5.9298 0.0003
22 7 4.0093 2.5079 -0.0001
23 6 3.4439 1.3056 -0.0001
24 7 4.2258 0.1595 0.0003
25 6 5.6867 0.2694 0.0001
26 6 6.1860 0.4336 1.4371
27 6 6.2934 -0.9962 -0.6091
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 0.5138 0.8900
31 1 0.2298 2.3500 -0.0100
32 1 4.2426 4.9160 2.0705
33 1 5.5379 4.1602 1.1110
34 1 6.1207 6.3569 0.1425
35 1 6.1940 6.4235 1.9201
36 1 4.4516 9.5007 1.0420
37 1 5.8141 8.8144 1.9589
38 1 8.2231 10.8252 -1.4990
39 1 4.1920 7.3283 -1.0104
40 1 2.8967 8.0841 -0.0509
41 1 2.2405 5.8209 -0.8600
42 1 2.3136 5.8872 0.9175
43 1 3.8052 -0.7146 0.0006
44 1 5.9859 1.1359 -0.5897
45 1 5.8868 -0.4329 2.0268
46 1 7.2729 0.5159 1.4369
47 1 5.7538 1.3352 1.8710
48 1 5.9378 -1.1131 -1.6327
49 1 7.3804 -0.9145 -0.6088
50 1 5.9943 -1.8627 -0.0193
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001165055754.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:26:25
Heat of formation + Delta-G solvation = 24.535936 kcal
Electronic energy + Delta-G solvation = -29840.213013 eV
Core-core repulsion = 25902.949083 eV
Total energy + Delta-G solvation = -3937.263930 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.38702 -40.45495 -39.12809 -38.33969 -36.55105 -34.58035 -34.43141 -32.56123
-31.88829 -30.63899 -29.56803 -28.28905 -28.05886 -26.80728 -25.18768 -24.04533
-23.98083 -22.93635 -21.91995 -20.85979 -19.47099 -18.97412 -18.86927 -18.56824
-17.30340 -17.07095 -16.54106 -16.32386 -16.04189 -15.92671 -15.89620 -15.55316
-15.38101 -15.16555 -14.83041 -14.69262 -14.38539 -14.33453 -13.96983 -13.67753
-13.22709 -13.11425 -13.01624 -12.96005 -12.84618 -12.65527 -12.41769 -12.31803
-12.23731 -12.15218 -12.05863 -12.03369 -11.83859 -11.74190 -11.72097 -11.53699
-10.84811 -10.76451 -10.13068 -9.63962 -9.04713 -8.55609 -8.28581 -6.34195
0.06939 0.31176 1.38363 1.39726 1.52113 1.87785 2.22073 2.36481
2.38797 2.80798 3.06401 3.23283 3.28633 3.55993 3.85409 3.93196
3.99452 4.07271 4.13004 4.18510 4.27702 4.35362 4.38971 4.45490
4.48234 4.50017 4.63772 4.75563 4.78709 4.83300 4.84008 4.86420
4.93950 4.98713 5.02044 5.07477 5.10605 5.12636 5.21531 5.24628
5.36297 5.51196 5.58387 5.65541 5.90660 6.00184 6.12791 6.32680
6.34149 6.45108 6.69550 6.73016 7.32275 7.32438 8.87933
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.015885 B = 0.002797 C = 0.002492
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1762.281790 B =10007.091140 C =11232.567688
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.319 6.319
3 C -0.066 4.066
4 C 0.108 3.892
5 N -0.575 5.575
6 C 0.494 3.506
7 N -0.475 5.475
8 C 0.092 3.908
9 C 0.067 3.933
10 N -0.530 5.530
11 C 0.162 3.838
12 C -0.549 4.549
13 H 0.033 0.967
14 C 0.010 3.990
15 N -0.949 5.949
16 Si 0.952 3.048
17 H -0.266 1.266
18 H -0.286 1.286
19 H -0.244 1.244
20 C 0.062 3.938
21 C 0.096 3.904
22 N -0.572 5.572
23 C 0.438 3.562
24 N -0.690 5.690
25 C 0.143 3.857
26 C -0.155 4.155
27 C -0.152 4.152
28 H 0.124 0.876
29 H 0.062 0.938
30 H 0.063 0.937
31 H 0.196 0.804
32 H 0.050 0.950
33 H 0.092 0.908
34 H 0.021 0.979
35 H 0.084 0.916
36 H 0.034 0.966
37 H 0.035 0.965
38 H 0.265 0.735
39 H 0.017 0.983
40 H 0.087 0.913
41 H 0.088 0.912
42 H 0.060 0.940
43 H 0.422 0.578
44 H 0.065 0.935
45 H 0.065 0.935
46 H 0.074 0.926
47 H 0.035 0.965
48 H 0.059 0.941
49 H 0.082 0.918
50 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.155 -25.639 6.248 29.486
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.232 6.232
3 C -0.121 4.121
4 C -0.054 4.054
5 N -0.300 5.300
6 C 0.137 3.863
7 N -0.195 5.195
8 C -0.035 4.035
9 C -0.062 4.062
10 N -0.254 5.254
11 C 0.034 3.966
12 C -0.588 4.588
13 H 0.051 0.949
14 C -0.188 4.188
15 N -0.589 5.589
16 Si 0.775 3.225
17 H -0.191 1.191
18 H -0.212 1.212
19 H -0.167 1.167
20 C -0.067 4.067
21 C -0.032 4.032
22 N -0.303 5.303
23 C 0.189 3.811
24 N -0.326 5.326
25 C 0.039 3.961
26 C -0.214 4.214
27 C -0.209 4.209
28 H 0.142 0.858
29 H 0.081 0.919
30 H 0.082 0.918
31 H 0.213 0.787
32 H 0.068 0.932
33 H 0.110 0.890
34 H 0.039 0.961
35 H 0.102 0.898
36 H 0.052 0.948
37 H 0.053 0.947
38 H 0.074 0.926
39 H 0.035 0.965
40 H 0.105 0.895
41 H 0.106 0.894
42 H 0.079 0.921
43 H 0.261 0.739
44 H 0.083 0.917
45 H 0.084 0.916
46 H 0.093 0.907
47 H 0.055 0.945
48 H 0.078 0.922
49 H 0.101 0.899
50 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -12.329 -24.808 6.184 28.384
hybrid contribution -0.123 0.094 -0.396 0.425
sum -12.452 -24.714 5.788 28.272
Atomic orbital electron populations
1.23346 0.76260 1.05865 1.02128 1.85986 1.23305 1.23790 1.90070
1.19806 0.91832 0.87997 1.12487 1.23297 1.01632 0.85442 0.95004
1.68280 1.09052 1.29646 1.23043 1.20603 0.85173 0.89134 0.91396
1.58604 1.19115 0.99501 1.42327 1.22097 0.94554 0.97878 0.88954
1.21965 0.93902 0.89498 1.00831 1.62696 1.18484 1.03229 1.40949
1.20039 0.93463 0.88201 0.94862 1.21895 1.24213 1.05487 1.07225
0.94927 1.25947 0.94265 1.00901 0.97674 1.70093 1.27719 1.30784
1.30350 0.85644 0.80243 0.77665 0.78956 1.19122 1.21224 1.16703
1.22071 0.95547 0.96645 0.92436 1.21942 0.91689 0.86895 1.02638
1.67460 1.39682 0.96633 1.26484 1.18010 0.85605 0.87375 0.90087
1.44615 1.05595 1.04347 1.78009 1.20984 0.78294 0.99805 0.97044
1.22126 1.01747 1.01411 0.96103 1.22015 1.02001 0.95935 1.00984
0.85818 0.91933 0.91822 0.78715 0.93150 0.88964 0.96062 0.89761
0.94795 0.94737 0.92570 0.96498 0.89512 0.89371 0.92140 0.73915
0.91698 0.91607 0.90706 0.94530 0.92198 0.89928 0.90595
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.16 9.84 113.37 1.12 1.27 16
2 O -0.32 -5.31 9.85 -94.98 -0.94 -6.24 16
3 C -0.07 -1.47 6.74 22.74 0.15 -1.32 16
4 C 0.11 2.46 10.29 84.63 0.87 3.33 16
5 N -0.57 -17.25 8.69 -197.84 -1.72 -18.97 16
6 C 0.49 16.58 7.18 261.45 1.88 18.45 16
7 N -0.47 -17.32 4.78 -708.19 -3.38 -20.70 16
8 C 0.09 3.21 5.46 86.31 0.47 3.68 16
9 C 0.07 2.73 5.24 86.31 0.45 3.19 16
10 N -0.53 -22.54 4.92 -900.28 -4.43 -26.96 16
11 C 0.16 7.74 4.21 85.56 0.36 8.10 16
12 C -0.55 -31.62 8.21 25.60 0.21 -31.41 16
13 H 0.03 2.13 6.07 -2.91 -0.02 2.11 16
14 C 0.01 0.58 5.47 84.66 0.46 1.04 16
15 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16
16 Si 0.95 44.08 27.37 68.60 1.88 45.95 16
17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
18 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16
19 H -0.24 -10.41 6.69 99.48 0.67 -9.75 16
20 C 0.06 2.51 5.32 86.31 0.46 2.97 16
21 C 0.10 3.34 4.77 86.31 0.41 3.75 16
22 N -0.57 -17.97 8.63 -195.06 -1.68 -19.65 16
23 C 0.44 11.27 7.51 133.22 1.00 12.27 16
24 N -0.69 -13.48 5.21 -323.65 -1.69 -15.17 16
25 C 0.14 2.66 3.21 44.99 0.14 2.81 16
26 C -0.16 -2.79 9.50 71.98 0.68 -2.11 16
27 C -0.15 -1.85 9.38 71.98 0.68 -1.17 16
28 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16
29 H 0.06 0.46 7.70 -2.39 -0.02 0.44 16
30 H 0.06 0.45 7.72 -2.39 -0.02 0.43 16
31 H 0.20 2.93 6.44 -2.91 -0.02 2.91 16
32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
33 H 0.09 3.12 7.64 -2.39 -0.02 3.10 16
34 H 0.02 1.03 6.62 -2.39 -0.02 1.01 16
35 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16
36 H 0.03 1.60 7.52 -2.39 -0.02 1.58 16
37 H 0.03 1.60 7.30 -2.39 -0.02 1.59 16
38 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16
39 H 0.02 0.81 6.78 -2.39 -0.02 0.79 16
40 H 0.09 3.27 8.12 -2.39 -0.02 3.25 16
41 H 0.09 2.97 7.80 -2.38 -0.02 2.95 16
42 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16
43 H 0.42 6.44 8.04 -92.70 -0.75 5.69 16
44 H 0.06 1.60 7.57 -2.39 -0.02 1.58 16
45 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
46 H 0.07 1.18 8.14 -2.38 -0.02 1.17 16
47 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16
48 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
49 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
50 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16
Total: -1.00 -72.88 391.56 -2.15 -75.03
By element:
Atomic # 1 Polarization: 21.47 SS G_CDS: 0.15 Total: 21.62 kcal
Atomic # 6 Polarization: 15.51 SS G_CDS: 9.35 Total: 24.86 kcal
Atomic # 7 Polarization: -148.62 SS G_CDS: -12.60 Total: -161.22 kcal
Atomic # 8 Polarization: -5.31 SS G_CDS: -0.94 Total: -6.24 kcal
Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.95 kcal
Total: -72.88 -2.15 -75.03 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001165055754.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.567 kcal
(2) G-P(sol) polarization free energy of solvation -72.877 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.690 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.154 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.031 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.536 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds