Wall clock time and date at job start Tue Mar 31 2020 18:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 C 1.53003 * 109.47401 * 240.00209 * 2 1 3 5 5 N 1.46498 * 109.47144 * 119.99915 * 2 1 3 6 6 C 1.34580 * 125.75009 * 74.97906 * 5 2 1 7 7 N 1.30867 * 107.62838 * 179.72702 * 6 5 2 8 8 C 1.34552 * 107.26432 * 0.42244 * 7 6 5 9 9 C 1.47876 * 126.04673 * 179.83159 * 8 7 6 10 10 O 1.21557 * 120.00143 * 179.69511 * 9 8 7 11 11 N 1.34778 * 119.99639 * 359.41685 * 9 8 7 12 12 C 1.46502 * 119.99738 * 180.27498 * 11 9 8 13 13 C 1.52999 * 109.47110 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46902 * 175.02363 * 13 12 11 15 15 C 1.53004 * 115.54981 * 278.02955 * 14 13 12 16 16 N 1.46495 * 109.46858 * 303.90241 * 15 14 13 17 17 C 1.36942 * 119.99774 * 175.59390 * 16 15 14 18 18 H 1.08000 * 119.99977 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99779 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00566 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99579 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46814 * 60.00323 * 21 19 17 23 23 H 1.48498 * 109.46768 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47258 * 300.00049 * 21 19 17 25 25 C 1.53005 * 117.49643 * 132.32551 * 14 13 12 26 26 C 1.53000 * 117.49975 * 63.70222 * 14 13 12 27 27 N 1.28851 * 125.74641 * 254.97534 * 5 2 1 28 28 H 1.08994 * 109.47435 * 300.00039 * 1 2 3 29 29 H 1.08998 * 109.47484 * 60.00087 * 1 2 3 30 30 H 1.09007 * 109.47047 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47121 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.47244 * 299.99583 * 3 2 1 33 33 H 1.08997 * 109.47589 * 59.99640 * 3 2 1 34 34 H 1.08998 * 109.46858 * 300.00010 * 4 2 1 35 35 H 1.08998 * 109.47043 * 59.99434 * 4 2 1 36 36 H 1.08996 * 109.47328 * 179.97438 * 4 2 1 37 37 H 1.08002 * 126.18617 * 0.03676 * 6 5 2 38 38 H 0.96999 * 120.00611 * 0.27434 * 11 9 8 39 39 H 1.09001 * 109.46960 * 300.00265 * 12 11 9 40 40 H 1.08996 * 109.47546 * 60.00074 * 12 11 9 41 41 H 1.08999 * 109.47287 * 295.01942 * 13 12 11 42 42 H 1.09000 * 109.47339 * 55.02328 * 13 12 11 43 43 H 1.08999 * 109.46845 * 63.90118 * 15 14 13 44 44 H 1.09002 * 109.46706 * 183.90320 * 15 14 13 45 45 H 0.97001 * 120.00478 * 355.59263 * 16 15 14 46 46 H 0.97001 * 120.00201 * 179.97438 * 20 19 17 47 47 H 1.08998 * 117.49816 * 359.97438 * 25 14 13 48 48 H 1.09007 * 117.49770 * 145.01812 * 25 14 13 49 49 H 1.08998 * 117.50057 * 214.97827 * 26 14 13 50 50 H 1.08997 * 117.49897 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 2.0135 -2.0220 1.3924 7 7 2.5330 -2.2506 2.5716 8 6 2.8497 -1.0573 3.1066 9 6 3.4609 -0.8337 4.4345 10 8 3.7070 0.2967 4.8077 11 7 3.7398 -1.8829 5.2332 12 6 4.3397 -1.6609 6.5512 13 6 4.5528 -3.0065 7.2477 14 6 5.2914 -2.7853 8.5692 15 6 6.8110 -2.6444 8.4603 16 7 7.3637 -3.8226 7.7877 17 6 8.7003 -3.8801 7.4955 18 1 9.3469 -3.0566 7.7605 19 6 9.2241 -4.9968 6.8586 20 7 8.4361 -6.0001 6.5352 21 14 11.0473 -5.0748 6.4593 22 1 11.8337 -4.9762 7.7152 23 1 11.3516 -6.3625 5.7852 24 1 11.4060 -3.9482 5.5609 25 6 4.7330 -3.4764 9.8148 26 6 4.5811 -1.9633 9.6466 27 7 2.5248 -0.1255 2.2375 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.6515 -2.7674 0.6998 38 1 3.5433 -2.7849 4.9355 39 1 5.2991 -1.1571 6.4335 40 1 3.6753 -1.0411 7.1532 41 1 3.5865 -3.4706 7.4448 42 1 5.1447 -3.6584 6.6053 43 1 7.0527 -1.7507 7.8849 44 1 7.2406 -2.5609 9.4587 45 1 6.7829 -4.5621 7.5494 46 1 8.8021 -6.7802 6.0899 47 1 3.8393 -4.0883 9.6929 48 1 5.4483 -3.8310 10.5570 49 1 5.1964 -1.3224 10.2780 50 1 3.5878 -1.5797 9.4137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167215170.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:41 Heat of formation + Delta-G solvation = 84.070951 kcal Electronic energy + Delta-G solvation = -28539.834858 eV Core-core repulsion = 24605.152559 eV Total energy + Delta-G solvation = -3934.682298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.68155 -39.44059 -38.18351 -37.64000 -34.76204 -33.87348 -32.82469 -31.31652 -30.73037 -29.77376 -28.13530 -28.00654 -26.00719 -25.03080 -23.26561 -22.87751 -22.61899 -21.69785 -20.51665 -20.38508 -18.65490 -17.78575 -17.03325 -16.79260 -16.68892 -16.06726 -15.43991 -15.07479 -14.90326 -14.71958 -14.50794 -14.31165 -14.05551 -13.78113 -13.31122 -13.27484 -13.05901 -12.96968 -12.89183 -12.62596 -12.41276 -12.29207 -12.26024 -11.91003 -11.79143 -11.54683 -11.35886 -11.06674 -10.88246 -10.77700 -10.58572 -10.56506 -10.53753 -10.17642 -10.05140 -9.86447 -9.70299 -9.58099 -9.26282 -8.89210 -8.77345 -6.83833 -5.70109 -2.97652 1.31384 1.86124 1.98240 3.08140 3.42662 3.48855 3.52744 3.53933 3.78789 3.99394 4.05193 4.13128 4.15875 4.46036 4.66057 4.67120 4.80793 4.93613 4.98636 5.04550 5.11042 5.12110 5.16882 5.21251 5.23370 5.33914 5.41351 5.50700 5.60473 5.66236 5.70720 5.76875 5.83184 5.88553 5.97766 6.16463 6.23670 6.26171 6.27498 6.33087 6.49643 6.52108 6.54469 6.69976 6.83916 6.90666 7.51972 7.76124 7.92582 8.27272 8.49199 9.60582 10.19259 10.54894 11.52766 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.002422 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.967628 B =11560.195185 C =13169.478811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.161 4.161 5 N -0.294 5.294 6 C 0.189 3.811 7 N -0.481 5.481 8 C 0.141 3.859 9 C 0.614 3.386 10 O -0.523 6.523 11 N -0.704 5.704 12 C 0.127 3.873 13 C -0.092 4.092 14 C -0.118 4.118 15 C 0.187 3.813 16 N -0.727 5.727 17 C -0.237 4.237 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.166 4.166 26 C -0.178 4.178 27 N -0.248 5.248 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.221 0.779 38 H 0.411 0.589 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.026 0.974 44 H 0.018 0.982 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.958 10.346 -14.188 27.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.219 4.219 5 N -0.091 5.091 6 C -0.107 4.107 7 N -0.206 5.206 8 C -0.138 4.138 9 C 0.395 3.605 10 O -0.397 6.397 11 N -0.356 5.356 12 C 0.005 3.995 13 C -0.130 4.130 14 C -0.119 4.119 15 C 0.060 3.940 16 N -0.372 5.372 17 C -0.368 4.368 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.203 4.203 26 C -0.216 4.216 27 N -0.086 5.086 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.238 0.762 38 H 0.246 0.754 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.044 0.956 44 H 0.035 0.965 45 H 0.219 0.781 46 H 0.064 0.936 47 H 0.107 0.893 48 H 0.113 0.887 49 H 0.110 0.890 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.421 11.579 -13.625 27.142 hybrid contribution 0.620 -1.049 -0.827 1.473 sum -19.801 10.529 -14.451 26.679 Atomic orbital electron populations 1.22263 0.91733 1.03644 1.04121 1.21165 0.95286 0.94386 0.80690 1.22004 1.02724 0.92207 1.03752 1.22270 1.02871 1.01164 0.95598 1.47788 1.41525 1.06291 1.13476 1.26314 1.01610 0.86420 0.96339 1.71303 1.16222 1.25875 1.07238 1.23796 1.06290 0.85649 0.98104 1.16256 0.78205 0.85029 0.81014 1.90820 1.52836 1.22551 1.73455 1.45725 1.62574 1.09546 1.17727 1.21430 0.98608 0.98238 0.81248 1.21269 0.99924 0.96246 0.95570 1.21563 0.96146 1.04595 0.89568 1.20183 0.86913 0.91378 0.95549 1.42301 1.06859 1.17632 1.70379 1.19188 0.85042 1.01315 1.31264 0.91337 1.24706 0.97743 0.96799 1.01732 1.69644 1.34031 1.07710 1.46852 0.86287 0.85365 0.76677 0.77994 1.21350 1.21748 1.21335 1.22995 1.02546 0.94419 1.00357 1.22968 1.01436 0.94258 1.02891 1.74283 1.13474 1.25462 0.95402 0.91246 0.89572 0.91307 0.91172 0.90312 0.90510 0.91059 0.89308 0.91020 0.76226 0.75365 0.90601 0.91501 0.91830 0.89027 0.95599 0.96466 0.78102 0.93563 0.89296 0.88719 0.88952 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 8.72 37.16 0.32 -0.32 16 2 C 0.17 0.98 1.23 -131.82 -0.16 0.82 16 3 C -0.15 -0.95 8.04 37.16 0.30 -0.65 16 4 C -0.16 -0.57 8.28 37.16 0.31 -0.26 16 5 N -0.29 -2.90 3.17 -49.84 -0.16 -3.06 16 6 C 0.19 1.79 11.71 -90.49 -1.06 0.73 16 7 N -0.48 -6.41 11.09 -12.36 -0.14 -6.55 16 8 C 0.14 2.18 7.96 -156.35 -1.24 0.94 16 9 C 0.61 10.52 7.83 -12.31 -0.10 10.43 16 10 O -0.52 -10.47 17.09 5.32 0.09 -10.37 16 11 N -0.70 -10.84 5.55 -61.24 -0.34 -11.18 16 12 C 0.13 1.99 5.49 -4.04 -0.02 1.97 16 13 C -0.09 -1.45 5.20 -26.73 -0.14 -1.59 16 14 C -0.12 -1.95 1.65 -154.50 -0.25 -2.21 16 15 C 0.19 3.90 6.15 -4.04 -0.02 3.87 16 16 N -0.73 -18.60 5.23 -59.91 -0.31 -18.91 16 17 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 21 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C -0.17 -2.48 9.87 -26.73 -0.26 -2.74 16 26 C -0.18 -2.45 9.58 -26.73 -0.26 -2.71 16 27 N -0.25 -3.50 11.09 32.08 0.36 -3.14 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.22 8.14 -51.92 -0.42 -0.20 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.08 0.62 8.02 -51.93 -0.42 0.20 16 34 H 0.07 0.16 7.34 -51.93 -0.38 -0.22 16 35 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.22 1.02 7.53 -52.49 -0.40 0.62 16 38 H 0.41 5.81 8.18 -40.82 -0.33 5.47 16 39 H 0.08 1.35 7.96 -51.93 -0.41 0.93 16 40 H 0.07 0.99 7.72 -51.93 -0.40 0.59 16 41 H 0.06 0.87 7.93 -51.93 -0.41 0.46 16 42 H 0.09 1.69 6.94 -51.93 -0.36 1.33 16 43 H 0.03 0.56 7.96 -51.93 -0.41 0.14 16 44 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 45 H 0.38 10.26 6.80 -40.82 -0.28 9.98 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 48 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 49 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 50 H 0.09 1.11 7.90 -51.93 -0.41 0.70 16 LS Contribution 414.22 15.07 6.24 6.24 Total: -1.00 -36.00 414.22 -9.80 -45.80 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -8.40 Total: 10.16 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -2.84 Total: 0.87 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: 0.13 Total: -70.57 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.00 -9.80 -45.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167215170.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.875 kcal (2) G-P(sol) polarization free energy of solvation -36.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds