Wall clock time and date at job start Tue Mar 31 2020 18:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 C 1.53003 * 109.47401 * 240.00209 * 2 1 3 5 5 N 1.46498 * 109.47144 * 119.99915 * 2 1 3 6 6 C 1.34580 * 125.75009 * 74.97906 * 5 2 1 7 7 N 1.30867 * 107.62838 * 179.72702 * 6 5 2 8 8 C 1.34552 * 107.26432 * 0.42244 * 7 6 5 9 9 C 1.47876 * 126.04673 * 179.83159 * 8 7 6 10 10 O 1.21557 * 120.00143 * 179.69511 * 9 8 7 11 11 N 1.34778 * 119.99639 * 359.41685 * 9 8 7 12 12 C 1.46502 * 119.99738 * 180.27498 * 11 9 8 13 13 C 1.52999 * 109.47110 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46902 * 175.02363 * 13 12 11 15 15 C 1.53004 * 115.54981 * 278.02955 * 14 13 12 16 16 N 1.46495 * 109.46858 * 303.90241 * 15 14 13 17 17 C 1.36942 * 119.99774 * 175.59390 * 16 15 14 18 18 H 1.08000 * 119.99977 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99779 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00566 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99579 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46814 * 60.00323 * 21 19 17 23 23 H 1.48498 * 109.46768 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47258 * 300.00049 * 21 19 17 25 25 C 1.53005 * 117.49643 * 132.32551 * 14 13 12 26 26 C 1.53000 * 117.49975 * 63.70222 * 14 13 12 27 27 N 1.28851 * 125.74641 * 254.97534 * 5 2 1 28 28 H 1.08994 * 109.47435 * 300.00039 * 1 2 3 29 29 H 1.08998 * 109.47484 * 60.00087 * 1 2 3 30 30 H 1.09007 * 109.47047 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47121 * 180.02562 * 3 2 1 32 32 H 1.09009 * 109.47244 * 299.99583 * 3 2 1 33 33 H 1.08997 * 109.47589 * 59.99640 * 3 2 1 34 34 H 1.08998 * 109.46858 * 300.00010 * 4 2 1 35 35 H 1.08998 * 109.47043 * 59.99434 * 4 2 1 36 36 H 1.08996 * 109.47328 * 179.97438 * 4 2 1 37 37 H 1.08002 * 126.18617 * 0.03676 * 6 5 2 38 38 H 0.96999 * 120.00611 * 0.27434 * 11 9 8 39 39 H 1.09001 * 109.46960 * 300.00265 * 12 11 9 40 40 H 1.08996 * 109.47546 * 60.00074 * 12 11 9 41 41 H 1.08999 * 109.47287 * 295.01942 * 13 12 11 42 42 H 1.09000 * 109.47339 * 55.02328 * 13 12 11 43 43 H 1.08999 * 109.46845 * 63.90118 * 15 14 13 44 44 H 1.09002 * 109.46706 * 183.90320 * 15 14 13 45 45 H 0.97001 * 120.00478 * 355.59263 * 16 15 14 46 46 H 0.97001 * 120.00201 * 179.97438 * 20 19 17 47 47 H 1.08998 * 117.49816 * 359.97438 * 25 14 13 48 48 H 1.09007 * 117.49770 * 145.01812 * 25 14 13 49 49 H 1.08998 * 117.50057 * 214.97827 * 26 14 13 50 50 H 1.08997 * 117.49897 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 2.0135 -2.0220 1.3924 7 7 2.5330 -2.2506 2.5716 8 6 2.8497 -1.0573 3.1066 9 6 3.4609 -0.8337 4.4345 10 8 3.7070 0.2967 4.8077 11 7 3.7398 -1.8829 5.2332 12 6 4.3397 -1.6609 6.5512 13 6 4.5528 -3.0065 7.2477 14 6 5.2914 -2.7853 8.5692 15 6 6.8110 -2.6444 8.4603 16 7 7.3637 -3.8226 7.7877 17 6 8.7003 -3.8801 7.4955 18 1 9.3469 -3.0566 7.7605 19 6 9.2241 -4.9968 6.8586 20 7 8.4361 -6.0001 6.5352 21 14 11.0473 -5.0748 6.4593 22 1 11.8337 -4.9762 7.7152 23 1 11.3516 -6.3625 5.7852 24 1 11.4060 -3.9482 5.5609 25 6 4.7330 -3.4764 9.8148 26 6 4.5811 -1.9633 9.6466 27 7 2.5248 -0.1255 2.2375 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.6515 -2.7674 0.6998 38 1 3.5433 -2.7849 4.9355 39 1 5.2991 -1.1571 6.4335 40 1 3.6753 -1.0411 7.1532 41 1 3.5865 -3.4706 7.4448 42 1 5.1447 -3.6584 6.6053 43 1 7.0527 -1.7507 7.8849 44 1 7.2406 -2.5609 9.4587 45 1 6.7829 -4.5621 7.5494 46 1 8.8021 -6.7802 6.0899 47 1 3.8393 -4.0883 9.6929 48 1 5.4483 -3.8310 10.5570 49 1 5.1964 -1.3224 10.2780 50 1 3.5878 -1.5797 9.4137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167215170.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:40 Heat of formation + Delta-G solvation = 60.422122 kcal Electronic energy + Delta-G solvation = -28540.860348 eV Core-core repulsion = 24605.152559 eV Total energy + Delta-G solvation = -3935.707789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.56659 -40.74473 -39.50800 -38.23383 -36.18164 -35.77928 -33.69239 -32.78354 -32.26885 -30.98817 -28.49251 -28.40769 -27.83925 -26.19986 -24.60852 -24.10001 -24.00486 -22.90484 -21.70899 -21.11473 -20.03157 -19.12221 -18.73567 -17.67910 -17.52519 -17.26714 -16.81592 -16.54481 -16.13690 -15.87073 -15.52245 -15.24644 -15.12345 -15.03182 -14.82984 -14.70067 -14.18995 -13.90829 -13.81146 -13.30837 -13.25392 -13.17135 -13.04805 -13.01653 -12.77884 -12.76348 -12.58732 -12.40270 -12.26767 -12.15149 -12.01286 -11.93392 -11.87889 -11.51280 -11.46396 -11.44329 -11.07764 -10.90288 -10.64047 -10.53800 -10.17080 -8.95893 -7.93430 -5.20910 0.27727 1.06931 1.14128 1.45674 1.48803 1.54711 1.97144 2.21622 2.55097 2.90599 3.05733 3.25498 3.39301 3.65140 3.73381 3.77016 3.82838 3.84631 3.88366 3.99063 4.08889 4.25973 4.39658 4.48614 4.53625 4.58103 4.58939 4.62698 4.67997 4.76828 4.79466 4.86286 4.89788 4.94341 4.98120 5.09360 5.09679 5.15135 5.16752 5.21263 5.26715 5.32387 5.35984 5.36138 5.38847 5.49557 5.66450 6.28855 6.29577 6.89178 7.07288 7.35871 8.12445 8.38242 9.29675 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.002422 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.967628 B =11560.195185 C =13169.478811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.156 3.844 3 C -0.149 4.149 4 C -0.157 4.157 5 N -0.286 5.286 6 C 0.201 3.799 7 N -0.505 5.505 8 C 0.112 3.888 9 C 0.610 3.390 10 O -0.563 6.563 11 N -0.695 5.695 12 C 0.135 3.865 13 C -0.078 4.078 14 C -0.141 4.141 15 C 0.187 3.813 16 N -0.736 5.736 17 C -0.247 4.247 18 H 0.070 0.930 19 C -0.072 4.072 20 N -0.965 5.965 21 Si 0.970 3.030 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.162 4.162 26 C -0.151 4.151 27 N -0.270 5.270 28 H 0.047 0.953 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.053 0.947 37 H 0.271 0.729 38 H 0.417 0.583 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.015 0.985 44 H 0.016 0.984 45 H 0.377 0.623 46 H 0.251 0.749 47 H 0.108 0.892 48 H 0.084 0.916 49 H 0.098 0.902 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.822 10.152 -15.655 29.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.076 3.924 3 C -0.207 4.207 4 C -0.215 4.215 5 N -0.083 5.083 6 C -0.093 4.093 7 N -0.231 5.231 8 C -0.167 4.167 9 C 0.393 3.607 10 O -0.440 6.440 11 N -0.347 5.347 12 C 0.012 3.988 13 C -0.115 4.115 14 C -0.142 4.142 15 C 0.061 3.939 16 N -0.379 5.379 17 C -0.379 4.379 18 H 0.088 0.912 19 C -0.265 4.265 20 N -0.616 5.616 21 Si 0.799 3.201 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.209 1.209 25 C -0.199 4.199 26 C -0.188 4.188 27 N -0.111 5.111 28 H 0.066 0.934 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.130 0.870 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.134 0.866 36 H 0.073 0.927 37 H 0.287 0.713 38 H 0.254 0.746 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.033 0.967 44 H 0.034 0.966 45 H 0.210 0.790 46 H 0.060 0.940 47 H 0.126 0.874 48 H 0.103 0.897 49 H 0.117 0.883 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -22.298 11.398 -15.085 29.235 hybrid contribution 1.142 -0.915 -0.447 1.530 sum -21.156 10.483 -15.532 28.261 Atomic orbital electron populations 1.22280 0.89771 1.04712 1.04471 1.21691 0.96702 0.93952 0.80082 1.22025 1.01339 0.93122 1.04199 1.22318 1.01804 1.02418 0.94952 1.48225 1.40024 1.06794 1.13216 1.27214 0.99477 0.86983 0.95645 1.71239 1.17505 1.25359 1.09027 1.23455 1.08354 0.86883 0.97985 1.16576 0.77709 0.84631 0.81827 1.90775 1.54725 1.23907 1.74584 1.45673 1.61857 1.09619 1.17533 1.21324 0.97548 0.98288 0.81606 1.21104 1.00445 0.95475 0.94523 1.21380 0.93573 1.08241 0.91010 1.20241 0.90109 0.89171 0.94405 1.42448 1.06005 1.18763 1.70661 1.19566 0.86499 1.01216 1.30603 0.91250 1.25498 1.01975 0.96706 1.02300 1.69794 1.35676 1.08152 1.47929 0.85267 0.80466 0.76461 0.77901 1.20413 1.21817 1.20858 1.23061 1.02713 0.95693 0.98388 1.23064 1.01962 0.93671 1.00092 1.74205 1.14049 1.26330 0.96524 0.93359 0.86737 0.89881 0.93317 0.87046 0.92860 0.89059 0.86625 0.92740 0.71325 0.74626 0.93415 0.90106 0.89116 0.92267 0.96667 0.96576 0.79007 0.93978 0.87359 0.89729 0.88333 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.72 71.98 0.63 -0.18 16 2 C 0.16 1.53 1.23 3.60 0.00 1.53 16 3 C -0.15 -1.81 8.04 71.98 0.58 -1.23 16 4 C -0.16 -0.61 8.28 71.98 0.60 -0.01 16 5 N -0.29 -5.38 3.17 -311.59 -0.99 -6.36 16 6 C 0.20 3.44 11.71 180.30 2.11 5.55 16 7 N -0.51 -13.30 11.09 -193.03 -2.14 -15.44 16 8 C 0.11 3.56 7.96 137.13 1.09 4.65 16 9 C 0.61 21.90 7.83 86.80 0.68 22.58 16 10 O -0.56 -23.76 17.09 -3.89 -0.07 -23.83 16 11 N -0.70 -22.13 5.55 -465.93 -2.59 -24.71 16 12 C 0.14 4.31 5.49 86.38 0.47 4.78 16 13 C -0.08 -2.43 5.20 30.60 0.16 -2.27 16 14 C -0.14 -4.61 1.65 -52.18 -0.09 -4.70 16 15 C 0.19 7.95 6.15 86.38 0.53 8.48 16 16 N -0.74 -38.64 5.23 -343.45 -1.80 -40.44 16 17 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 18 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 19 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 20 N -0.96 -59.90 13.06 21.65 0.28 -59.61 16 21 Si 0.97 47.60 29.55 68.60 2.03 49.63 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 24 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 25 C -0.16 -4.54 9.87 30.60 0.30 -4.24 16 26 C -0.15 -3.81 9.58 30.60 0.29 -3.51 16 27 N -0.27 -7.86 11.09 -52.43 -0.58 -8.44 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.08 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.05 0.89 8.02 -2.39 -0.02 0.88 16 34 H 0.09 0.01 7.34 -2.39 -0.02 0.00 16 35 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.27 1.38 7.53 -2.91 -0.02 1.36 16 38 H 0.42 12.12 8.18 -92.71 -0.76 11.36 16 39 H 0.05 1.79 7.96 -2.39 -0.02 1.77 16 40 H 0.08 2.35 7.72 -2.39 -0.02 2.33 16 41 H 0.09 2.33 7.93 -2.39 -0.02 2.32 16 42 H 0.06 2.25 6.94 -2.39 -0.02 2.24 16 43 H 0.02 0.68 7.96 -2.39 -0.02 0.66 16 44 H 0.02 0.70 8.10 -2.39 -0.02 0.68 16 45 H 0.38 20.74 6.80 -92.71 -0.63 20.11 16 46 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 47 H 0.11 2.63 8.07 -2.39 -0.02 2.61 16 48 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 49 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 50 H 0.11 2.40 7.90 -2.39 -0.02 2.38 16 Total: -1.00 -82.20 414.22 2.38 -79.83 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -0.44 Total: 35.27 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 8.67 Total: 14.12 kcal Atomic # 7 Polarization: -147.20 SS G_CDS: -7.81 Total: -155.01 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.07 Total: -23.83 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -82.20 2.38 -79.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167215170.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.249 kcal (2) G-P(sol) polarization free energy of solvation -82.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds