Wall clock time and date at job start Tue Mar 31 2020 18:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00576 * 2 1 4 4 C 1.52998 * 109.47213 * 124.99978 * 3 2 1 5 5 N 1.46495 * 109.47184 * 180.02562 * 4 3 2 6 6 C 1.34820 * 126.59519 * 125.00442 * 5 4 3 7 7 C 1.36597 * 106.83727 * 180.24451 * 6 5 4 8 8 C 1.47527 * 125.76547 * 179.71308 * 7 6 5 9 9 O 1.21593 * 120.00047 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99610 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00232 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47474 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46953 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46953 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47189 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47189 * 180.02562 * 15 14 13 17 17 N 1.46502 * 109.47100 * 179.97438 * 16 15 14 18 18 C 1.36932 * 120.00078 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00373 * 0.02562 * 18 17 16 20 20 C 1.38818 * 120.00122 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99794 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99765 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46926 * 90.00843 * 22 20 18 24 24 H 1.48501 * 109.46851 * 209.99977 * 22 20 18 25 25 H 1.48496 * 109.47428 * 330.00450 * 22 20 18 26 26 N 1.34396 * 108.45930 * 359.56394 * 7 6 5 27 27 N 1.28759 * 109.52721 * 0.44454 * 26 7 6 28 28 H 1.07995 * 119.99372 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.00252 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.99626 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.46518 * 5.00558 * 3 2 1 32 32 H 1.08997 * 109.47292 * 245.00278 * 3 2 1 33 33 H 1.09003 * 109.47199 * 60.00383 * 4 3 2 34 34 H 1.09007 * 109.47292 * 300.00330 * 4 3 2 35 35 H 1.08002 * 126.57680 * 359.97185 * 6 5 4 36 36 H 0.97003 * 120.00203 * 359.97438 * 10 8 7 37 37 H 1.09006 * 109.46702 * 300.00219 * 11 10 8 38 38 H 1.08996 * 109.47356 * 59.99751 * 11 10 8 39 39 H 1.08992 * 109.46977 * 299.99709 * 12 11 10 40 40 H 1.08997 * 109.47082 * 60.00406 * 12 11 10 41 41 H 1.09006 * 109.47024 * 299.99891 * 13 12 11 42 42 H 1.08994 * 109.47056 * 59.99590 * 13 12 11 43 43 H 1.08997 * 109.47315 * 300.00082 * 14 13 12 44 44 H 1.09004 * 109.47046 * 59.99804 * 14 13 12 45 45 H 1.09006 * 109.46907 * 299.99964 * 15 14 13 46 46 H 1.08996 * 109.47436 * 59.99670 * 15 14 13 47 47 H 1.08992 * 109.46977 * 299.99785 * 16 15 14 48 48 H 1.08997 * 109.47082 * 60.00482 * 16 15 14 49 49 H 0.97003 * 119.99941 * 0.02562 * 17 16 15 50 50 H 0.97003 * 119.99944 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 6 3.0352 1.3329 1.1816 5 7 3.7673 2.6018 1.1820 6 6 3.8485 3.4827 2.1994 7 6 4.6232 4.5200 1.7638 8 6 4.9771 5.7196 2.5462 9 8 4.5685 5.8455 3.6845 10 7 5.7533 6.6759 1.9992 11 6 6.1053 7.8670 2.7761 12 6 6.9865 8.7868 1.9286 13 6 7.3536 10.0310 2.7400 14 6 8.2353 10.9506 1.8927 15 6 8.6018 12.1950 2.7038 16 6 9.4831 13.1148 1.8563 17 7 9.8335 14.3067 2.6327 18 6 10.6219 15.2786 2.0768 19 1 10.9851 15.1667 1.0658 20 6 10.9544 16.4077 2.8127 21 7 11.7118 17.3421 2.2782 22 14 10.3257 16.6016 4.5610 23 1 11.3010 16.0024 5.5070 24 1 10.1592 18.0446 4.8699 25 1 9.0174 15.9123 4.6960 26 7 5.0111 4.2614 0.5033 27 7 4.5190 3.1335 0.1244 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0897 32 1 2.6214 1.4025 -0.9314 33 1 3.7401 0.5064 1.0920 34 1 2.4774 1.2354 2.1131 35 1 3.3857 3.3885 3.1707 36 1 6.0795 6.5753 1.0912 37 1 5.1962 8.3966 3.0610 38 1 6.6480 7.5685 3.6730 39 1 7.8956 8.2574 1.6434 40 1 6.4434 9.0854 1.0321 41 1 6.4442 10.5603 3.0249 42 1 7.8964 9.7328 3.6369 43 1 9.1446 10.4211 1.6082 44 1 7.6927 11.2488 0.9956 45 1 7.6923 12.7244 2.9879 46 1 9.1442 11.8972 3.6011 47 1 10.3925 12.5857 1.5718 48 1 8.9403 13.4127 0.9593 49 1 9.5077 14.4071 3.5408 50 1 11.9438 18.1313 2.7922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179776756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:11 Heat of formation + Delta-G solvation = 65.652871 kcal Electronic energy + Delta-G solvation = -26091.686292 eV Core-core repulsion = 22156.205325 eV Total energy + Delta-G solvation = -3935.480966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.73045 -39.72712 -37.09993 -36.87658 -35.52864 -34.45802 -33.95683 -32.02952 -31.51577 -30.48556 -29.82407 -27.27557 -25.29774 -24.64459 -23.30871 -22.40492 -21.97667 -21.23983 -20.81009 -20.66608 -20.47601 -18.51200 -17.44025 -16.84877 -16.76146 -16.37186 -16.20729 -16.04476 -15.37099 -15.18170 -14.78995 -14.61109 -14.35240 -14.19250 -13.85900 -13.74558 -13.43192 -13.20025 -12.99087 -12.68647 -12.65610 -12.38091 -12.34055 -11.91866 -11.78110 -11.76363 -11.58278 -11.40579 -10.97543 -10.95665 -10.82247 -10.74921 -10.57484 -10.32281 -10.23255 -10.17367 -10.03849 -9.83577 -9.53935 -9.36148 -8.83902 -7.17138 -5.72250 -3.07090 0.59755 1.24213 1.31880 1.58778 2.77524 2.90903 3.41483 3.44607 3.48779 3.64159 3.70279 3.91990 4.12751 4.24621 4.39378 4.42547 4.46012 4.55585 4.63908 4.68052 4.75952 4.91009 4.95174 5.12473 5.16432 5.20401 5.25089 5.34199 5.37546 5.53512 5.59762 5.62141 5.70561 5.75355 5.84151 5.85450 5.92513 5.93683 6.07378 6.09436 6.17032 6.26474 6.30341 6.43585 6.83987 6.88112 7.07421 7.45168 7.81355 8.05232 8.47351 9.27124 9.99751 10.20267 11.46487 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.042714 B = 0.001134 C = 0.001118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.372052 B =24689.529525 C =25045.822821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C -0.106 4.106 4 C 0.125 3.875 5 N -0.361 5.361 6 C 0.095 3.905 7 C -0.103 4.103 8 C 0.604 3.396 9 O -0.540 6.540 10 N -0.714 5.714 11 C 0.118 3.882 12 C -0.132 4.132 13 C -0.116 4.116 14 C -0.114 4.114 15 C -0.131 4.131 16 C 0.156 3.844 17 N -0.759 5.759 18 C -0.243 4.243 19 H 0.090 0.910 20 C 0.002 3.998 21 N -0.936 5.936 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 N -0.204 5.204 27 N -0.061 5.061 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.205 0.795 36 H 0.409 0.591 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.025 0.975 48 H 0.025 0.975 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.823 -40.959 -2.045 47.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.180 4.180 3 C -0.144 4.144 4 C 0.004 3.996 5 N -0.146 5.146 6 C -0.062 4.062 7 C -0.243 4.243 8 C 0.388 3.612 9 O -0.416 6.416 10 N -0.365 5.365 11 C -0.005 4.005 12 C -0.170 4.170 13 C -0.154 4.154 14 C -0.152 4.152 15 C -0.169 4.169 16 C 0.029 3.971 17 N -0.404 5.404 18 C -0.373 4.373 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.585 5.585 22 Si 0.716 3.284 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 N -0.078 5.078 27 N -0.041 5.041 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.222 0.778 36 H 0.245 0.755 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.043 0.957 48 H 0.043 0.957 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.501 -40.972 -2.821 47.318 hybrid contribution -0.649 0.176 1.785 1.908 sum -24.150 -40.796 -1.036 47.420 Atomic orbital electron populations 1.23987 0.95887 1.02422 0.99124 1.22722 0.96025 0.97574 1.01670 1.21027 0.97972 0.96918 0.98516 1.22084 0.94537 0.81209 1.01735 1.50583 1.35707 1.17513 1.10763 1.23419 0.98190 0.89150 0.95411 1.21475 1.08834 1.00214 0.93732 1.16739 0.78393 0.80979 0.85102 1.90826 1.54638 1.78569 1.17554 1.45826 1.51378 1.20556 1.18723 1.21508 0.99514 0.84712 0.94772 1.21837 0.99710 0.96306 0.99153 1.21515 1.00302 0.94856 0.98713 1.21493 0.99414 0.95719 0.98576 1.21782 1.00135 0.95774 0.99165 1.20639 0.95579 0.87156 0.93742 1.42754 1.62093 1.21005 1.14589 1.19102 1.21978 0.96758 0.99500 0.89263 1.24678 0.99887 0.96755 0.97981 1.69708 1.41320 1.10455 1.36996 0.86523 0.78734 0.76962 0.86206 1.21078 1.21722 1.20315 1.74645 1.15291 1.07703 1.10190 1.81998 1.08863 1.04922 1.08351 0.88346 0.87901 0.86637 0.90517 0.88978 0.87972 0.87403 0.77791 0.75543 0.91081 0.91072 0.91056 0.91065 0.91644 0.91642 0.91849 0.91866 0.92156 0.92140 0.95688 0.95742 0.80725 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.35 14.32 29.01 0.42 0.07 16 2 C -0.16 -0.28 9.52 -36.03 -0.34 -0.62 16 3 C -0.11 -0.25 5.86 -27.88 -0.16 -0.41 16 4 C 0.13 0.23 6.52 -4.05 -0.03 0.20 16 5 N -0.36 -2.01 3.69 -61.06 -0.23 -2.23 16 6 C 0.10 0.58 11.27 -16.83 -0.19 0.39 16 7 C -0.10 -0.92 6.99 -83.55 -0.58 -1.51 16 8 C 0.60 6.23 7.82 -12.48 -0.10 6.14 16 9 O -0.54 -6.94 16.86 5.28 0.09 -6.85 16 10 N -0.71 -6.32 5.55 -61.35 -0.34 -6.66 16 11 C 0.12 1.02 5.67 -4.04 -0.02 1.00 16 12 C -0.13 -1.05 5.33 -26.73 -0.14 -1.20 16 13 C -0.12 -1.11 5.21 -26.73 -0.14 -1.25 16 14 C -0.11 -1.34 5.21 -26.73 -0.14 -1.48 16 15 C -0.13 -2.00 5.33 -26.73 -0.14 -2.14 16 16 C 0.16 3.12 6.26 -4.04 -0.03 3.09 16 17 N -0.76 -18.93 5.41 -59.91 -0.32 -19.26 16 18 C -0.24 -7.17 10.47 -15.06 -0.16 -7.33 16 19 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 20 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 21 N -0.94 -30.15 13.97 55.49 0.78 -29.38 16 22 Si 0.89 22.68 27.73 -169.99 -4.71 17.97 16 23 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 26 N -0.20 -1.99 12.04 32.85 0.40 -1.59 16 27 N -0.06 -0.53 13.65 60.35 0.82 0.29 16 28 H 0.10 0.19 7.84 -52.49 -0.41 -0.22 16 29 H 0.10 0.13 8.06 -52.49 -0.42 -0.30 16 30 H 0.12 0.08 8.06 -52.48 -0.42 -0.34 16 31 H 0.08 0.23 7.79 -51.93 -0.40 -0.18 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.08 8.14 -51.93 -0.42 -0.35 16 34 H 0.11 -0.05 8.08 -51.92 -0.42 -0.47 16 35 H 0.21 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.41 3.11 8.16 -40.82 -0.33 2.78 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.36 8.71 5.53 -40.82 -0.23 8.48 16 50 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 422.87 15.07 6.37 6.37 Total: -1.00 -36.69 422.87 -7.58 -44.26 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.57 Total: 2.14 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.85 Total: -5.07 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 1.10 Total: -58.83 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: 0.09 Total: -6.85 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.71 Total: 17.97 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -36.69 -7.58 -44.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179776756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.916 kcal (2) G-P(sol) polarization free energy of solvation -36.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds