Wall clock time and date at job start Tue Mar 31 2020 18:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00576 * 2 1 4 4 C 1.52998 * 109.47213 * 124.99978 * 3 2 1 5 5 N 1.46495 * 109.47184 * 180.02562 * 4 3 2 6 6 C 1.34820 * 126.59519 * 125.00442 * 5 4 3 7 7 C 1.36597 * 106.83727 * 180.24451 * 6 5 4 8 8 C 1.47527 * 125.76547 * 179.71308 * 7 6 5 9 9 O 1.21593 * 120.00047 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99610 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00232 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47474 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46953 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46953 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47189 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47189 * 180.02562 * 15 14 13 17 17 N 1.46502 * 109.47100 * 179.97438 * 16 15 14 18 18 C 1.36932 * 120.00078 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00373 * 0.02562 * 18 17 16 20 20 C 1.38818 * 120.00122 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99794 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99765 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46926 * 90.00843 * 22 20 18 24 24 H 1.48501 * 109.46851 * 209.99977 * 22 20 18 25 25 H 1.48496 * 109.47428 * 330.00450 * 22 20 18 26 26 N 1.34396 * 108.45930 * 359.56394 * 7 6 5 27 27 N 1.28759 * 109.52721 * 0.44454 * 26 7 6 28 28 H 1.07995 * 119.99372 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.00252 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.99626 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.46518 * 5.00558 * 3 2 1 32 32 H 1.08997 * 109.47292 * 245.00278 * 3 2 1 33 33 H 1.09003 * 109.47199 * 60.00383 * 4 3 2 34 34 H 1.09007 * 109.47292 * 300.00330 * 4 3 2 35 35 H 1.08002 * 126.57680 * 359.97185 * 6 5 4 36 36 H 0.97003 * 120.00203 * 359.97438 * 10 8 7 37 37 H 1.09006 * 109.46702 * 300.00219 * 11 10 8 38 38 H 1.08996 * 109.47356 * 59.99751 * 11 10 8 39 39 H 1.08992 * 109.46977 * 299.99709 * 12 11 10 40 40 H 1.08997 * 109.47082 * 60.00406 * 12 11 10 41 41 H 1.09006 * 109.47024 * 299.99891 * 13 12 11 42 42 H 1.08994 * 109.47056 * 59.99590 * 13 12 11 43 43 H 1.08997 * 109.47315 * 300.00082 * 14 13 12 44 44 H 1.09004 * 109.47046 * 59.99804 * 14 13 12 45 45 H 1.09006 * 109.46907 * 299.99964 * 15 14 13 46 46 H 1.08996 * 109.47436 * 59.99670 * 15 14 13 47 47 H 1.08992 * 109.46977 * 299.99785 * 16 15 14 48 48 H 1.08997 * 109.47082 * 60.00482 * 16 15 14 49 49 H 0.97003 * 119.99941 * 0.02562 * 17 16 15 50 50 H 0.97003 * 119.99944 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 6 3.0352 1.3329 1.1816 5 7 3.7673 2.6018 1.1820 6 6 3.8485 3.4827 2.1994 7 6 4.6232 4.5200 1.7638 8 6 4.9771 5.7196 2.5462 9 8 4.5685 5.8455 3.6845 10 7 5.7533 6.6759 1.9992 11 6 6.1053 7.8670 2.7761 12 6 6.9865 8.7868 1.9286 13 6 7.3536 10.0310 2.7400 14 6 8.2353 10.9506 1.8927 15 6 8.6018 12.1950 2.7038 16 6 9.4831 13.1148 1.8563 17 7 9.8335 14.3067 2.6327 18 6 10.6219 15.2786 2.0768 19 1 10.9851 15.1667 1.0658 20 6 10.9544 16.4077 2.8127 21 7 11.7118 17.3421 2.2782 22 14 10.3257 16.6016 4.5610 23 1 11.3010 16.0024 5.5070 24 1 10.1592 18.0446 4.8699 25 1 9.0174 15.9123 4.6960 26 7 5.0111 4.2614 0.5033 27 7 4.5190 3.1335 0.1244 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0897 32 1 2.6214 1.4025 -0.9314 33 1 3.7401 0.5064 1.0920 34 1 2.4774 1.2354 2.1131 35 1 3.3857 3.3885 3.1707 36 1 6.0795 6.5753 1.0912 37 1 5.1962 8.3966 3.0610 38 1 6.6480 7.5685 3.6730 39 1 7.8956 8.2574 1.6434 40 1 6.4434 9.0854 1.0321 41 1 6.4442 10.5603 3.0249 42 1 7.8964 9.7328 3.6369 43 1 9.1446 10.4211 1.6082 44 1 7.6927 11.2488 0.9956 45 1 7.6923 12.7244 2.9879 46 1 9.1442 11.8972 3.6011 47 1 10.3925 12.5857 1.5718 48 1 8.9403 13.4127 0.9593 49 1 9.5077 14.4071 3.5408 50 1 11.9438 18.1313 2.7922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179776756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:10 Heat of formation + Delta-G solvation = 40.135168 kcal Electronic energy + Delta-G solvation = -26092.792822 eV Core-core repulsion = 22156.205325 eV Total energy + Delta-G solvation = -3936.587497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.27081 -40.48047 -37.96657 -37.33755 -36.83646 -35.35799 -34.72043 -33.66846 -32.31938 -31.67499 -30.30953 -28.48007 -25.93271 -25.55856 -24.43929 -23.26491 -22.84216 -22.22661 -22.04646 -21.20147 -20.76845 -19.61768 -19.04469 -17.30323 -17.26042 -17.11974 -16.94473 -16.60728 -16.26508 -16.20158 -15.80499 -15.70081 -15.39650 -15.03954 -14.90743 -14.88098 -14.14754 -14.09385 -13.95094 -13.69227 -13.47438 -13.32703 -13.15045 -13.01735 -12.69616 -12.65063 -12.45600 -12.22514 -12.07150 -12.04020 -11.88528 -11.84948 -11.79832 -11.57217 -11.35800 -11.31731 -11.20135 -10.96950 -10.47870 -10.30140 -10.05674 -9.30934 -8.04315 -5.38220 0.11296 0.57541 1.00823 1.37742 1.39583 1.41770 1.49415 2.10902 2.19918 2.48212 3.15055 3.27111 3.34889 3.57902 3.75581 3.80414 3.90158 3.93483 4.02781 4.04393 4.20943 4.24098 4.26474 4.31202 4.35588 4.38964 4.58611 4.61982 4.64236 4.78296 4.80837 4.87100 4.96036 4.98252 5.01382 5.05951 5.06144 5.16641 5.29539 5.33635 5.40581 5.41782 5.54831 5.57581 5.71632 5.74161 5.81215 6.20455 6.38157 6.86350 7.06986 7.09625 7.83703 8.03485 9.17539 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.042714 B = 0.001134 C = 0.001118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.372052 B =24689.529525 C =25045.822821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 C -0.102 4.102 4 C 0.118 3.882 5 N -0.349 5.349 6 C 0.110 3.890 7 C -0.127 4.127 8 C 0.603 3.397 9 O -0.570 6.570 10 N -0.709 5.709 11 C 0.121 3.879 12 C -0.122 4.122 13 C -0.111 4.111 14 C -0.108 4.108 15 C -0.120 4.120 16 C 0.149 3.851 17 N -0.763 5.763 18 C -0.242 4.242 19 H 0.054 0.946 20 C -0.065 4.065 21 N -0.985 5.985 22 Si 0.959 3.041 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.251 1.251 26 N -0.224 5.224 27 N -0.087 5.087 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.139 0.861 35 H 0.236 0.764 36 H 0.415 0.585 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.022 0.978 48 H 0.020 0.980 49 H 0.366 0.634 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.617 -43.327 -0.389 50.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.178 4.178 3 C -0.140 4.140 4 C -0.001 4.001 5 N -0.133 5.133 6 C -0.048 4.048 7 C -0.267 4.267 8 C 0.388 3.612 9 O -0.449 6.449 10 N -0.359 5.359 11 C -0.002 4.002 12 C -0.160 4.160 13 C -0.149 4.149 14 C -0.146 4.146 15 C -0.158 4.158 16 C 0.024 3.976 17 N -0.409 5.409 18 C -0.373 4.373 19 H 0.072 0.928 20 C -0.256 4.256 21 N -0.636 5.636 22 Si 0.786 3.214 23 H -0.202 1.202 24 H -0.219 1.219 25 H -0.175 1.175 26 N -0.098 5.098 27 N -0.067 5.067 28 H 0.113 0.887 29 H 0.128 0.872 30 H 0.146 0.854 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.157 0.843 35 H 0.252 0.748 36 H 0.251 0.749 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.040 0.960 48 H 0.039 0.961 49 H 0.200 0.800 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -25.314 -43.405 -1.213 50.262 hybrid contribution -0.100 0.828 1.150 1.420 sum -25.414 -42.577 -0.063 49.585 Atomic orbital electron populations 1.24101 0.96147 1.02703 0.99295 1.22767 0.95936 0.97607 1.01447 1.20947 0.97778 0.97129 0.98148 1.22490 0.94744 0.79938 1.02916 1.50823 1.34631 1.18086 1.09765 1.23889 0.96686 0.87978 0.96235 1.21488 1.10540 1.00802 0.93891 1.16934 0.78047 0.81415 0.84818 1.90799 1.55996 1.79355 1.18785 1.45824 1.50841 1.20328 1.18949 1.21458 0.99323 0.84694 0.94741 1.21722 0.99888 0.95476 0.98886 1.21438 0.99930 0.94935 0.98565 1.21435 1.00121 0.94533 0.98496 1.21696 0.99104 0.96112 0.98876 1.20868 0.96298 0.86325 0.94149 1.42800 1.61447 1.21448 1.15190 1.19096 1.22002 0.97954 0.98257 0.92815 1.25572 1.00523 0.96390 1.03113 1.69897 1.43246 1.11291 1.39157 0.85345 0.79302 0.76903 0.79877 1.20178 1.21948 1.17527 1.74608 1.16052 1.08358 1.10737 1.81921 1.09993 1.05051 1.09725 0.88672 0.87167 0.85389 0.91323 0.90499 0.86441 0.84316 0.74756 0.74858 0.91592 0.91554 0.90408 0.90447 0.91403 0.91358 0.91477 0.91542 0.91863 0.91717 0.96032 0.96146 0.80033 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.50 14.32 67.78 0.97 0.47 16 2 C -0.16 -0.29 9.52 25.65 0.24 -0.05 16 3 C -0.10 -0.36 5.86 29.85 0.17 -0.18 16 4 C 0.12 0.16 6.52 86.38 0.56 0.72 16 5 N -0.35 -3.32 3.69 -347.09 -1.28 -4.60 16 6 C 0.11 1.15 11.27 83.85 0.95 2.10 16 7 C -0.13 -2.18 6.99 40.82 0.29 -1.90 16 8 C 0.60 12.12 7.82 86.69 0.68 12.79 16 9 O -0.57 -14.34 16.86 -4.01 -0.07 -14.41 16 10 N -0.71 -12.01 5.55 -466.28 -2.59 -14.60 16 11 C 0.12 1.95 5.67 86.38 0.49 2.44 16 12 C -0.12 -1.70 5.33 30.60 0.16 -1.54 16 13 C -0.11 -1.85 5.21 30.60 0.16 -1.69 16 14 C -0.11 -2.29 5.21 30.59 0.16 -2.13 16 15 C -0.12 -3.42 5.33 30.59 0.16 -3.26 16 16 C 0.15 5.85 6.26 86.38 0.54 6.39 16 17 N -0.76 -37.40 5.41 -343.45 -1.86 -39.26 16 18 C -0.24 -14.46 10.47 84.04 0.88 -13.58 16 19 H 0.05 3.51 8.06 -2.91 -0.02 3.48 16 20 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 21 N -0.99 -64.76 13.97 21.65 0.30 -64.46 16 22 Si 0.96 46.42 27.73 68.60 1.90 48.32 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 26 N -0.22 -4.30 12.04 -49.99 -0.60 -4.90 16 27 N -0.09 -1.47 13.65 37.02 0.51 -0.97 16 28 H 0.09 0.30 7.84 -2.91 -0.02 0.27 16 29 H 0.11 0.12 8.06 -2.91 -0.02 0.10 16 30 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 31 H 0.07 0.35 7.79 -2.38 -0.02 0.34 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.14 -0.62 8.08 -2.38 -0.02 -0.64 16 35 H 0.24 0.79 8.06 -2.91 -0.02 0.77 16 36 H 0.41 6.02 8.16 -92.71 -0.76 5.27 16 37 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.37 16.91 5.53 -92.71 -0.51 16.39 16 50 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -80.61 422.87 2.79 -77.82 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -0.40 Total: 19.92 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 6.88 Total: -2.87 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -5.52 Total: -128.78 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.07 Total: -14.41 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.90 Total: 48.32 kcal Total: -80.61 2.79 -77.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179776756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.954 kcal (2) G-P(sol) polarization free energy of solvation -80.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds