Wall clock time and date at job start Tue Mar 31 2020 19:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53009 * 109.46946 * 2 1 4 4 N 1.46500 * 109.46746 * 179.97438 * 3 2 1 5 5 C 1.34813 * 126.59053 * 125.27436 * 4 3 2 6 6 C 1.36601 * 106.83903 * 180.10490 * 5 4 3 7 7 C 1.47523 * 125.76999 * 179.90012 * 6 5 4 8 8 O 1.21593 * 120.00173 * 359.71574 * 7 6 5 9 9 N 1.34777 * 119.99662 * 179.71876 * 7 6 5 10 10 C 1.48146 * 127.83986 * 0.02562 * 9 7 6 11 11 C 1.54392 * 104.62026 * 140.41734 * 10 9 7 12 12 H 1.08992 * 110.43549 * 142.78251 * 11 10 9 13 13 C 1.52995 * 110.34092 * 264.99846 * 11 10 9 14 14 C 1.54290 * 104.95738 * 23.86560 * 11 10 9 15 15 C 1.52995 * 110.34298 * 241.02555 * 14 11 10 16 16 C 1.52992 * 110.34238 * 118.87205 * 14 11 10 17 17 N 1.46499 * 109.47267 * 180.02562 * 16 14 11 18 18 C 1.36935 * 119.99938 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00518 * 359.72965 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99892 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99858 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47174 * 89.99644 * 22 20 18 24 24 H 1.48494 * 109.46800 * 209.99692 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99394 * 22 20 18 26 26 C 1.48150 * 127.83647 * 180.02562 * 9 7 6 27 27 N 1.34403 * 108.45586 * 359.63741 * 6 5 4 28 28 N 1.28761 * 109.52428 * 0.22414 * 27 6 5 29 29 H 1.08994 * 109.46781 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47056 * 300.00628 * 1 2 3 31 31 H 1.09004 * 109.46464 * 60.00321 * 1 2 3 32 32 H 1.08993 * 109.47391 * 240.00263 * 2 1 3 33 33 H 1.08996 * 109.47086 * 119.99560 * 2 1 3 34 34 H 1.09001 * 109.47091 * 59.99758 * 3 2 1 35 35 H 1.08996 * 109.46868 * 299.99693 * 3 2 1 36 36 H 1.08001 * 126.58529 * 359.96997 * 5 4 3 37 37 H 1.08999 * 110.40740 * 21.63044 * 10 9 7 38 38 H 1.08999 * 110.40914 * 259.19976 * 10 9 7 39 39 H 1.09000 * 109.47248 * 175.53249 * 13 11 10 40 40 H 1.08998 * 109.47323 * 295.53265 * 13 11 10 41 41 H 1.09005 * 109.47428 * 55.53483 * 13 11 10 42 42 H 1.09000 * 109.47035 * 298.52751 * 15 14 11 43 43 H 1.09000 * 109.47068 * 58.52622 * 15 14 11 44 44 H 1.09004 * 109.47243 * 178.52700 * 15 14 11 45 45 H 1.09004 * 109.47330 * 59.99913 * 16 14 11 46 46 H 1.09005 * 109.47124 * 300.00117 * 16 14 11 47 47 H 0.96999 * 119.99984 * 359.97438 * 17 16 14 48 48 H 0.97005 * 119.99715 * 180.02562 * 21 20 18 49 49 H 1.08999 * 110.40411 * 100.79819 * 26 9 7 50 50 H 1.08998 * 110.40803 * 338.37176 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3090 2.0675 -0.8828 6 6 5.5945 1.7990 -0.5068 7 6 6.8109 2.2787 -1.1898 8 8 6.7164 2.9739 -2.1829 9 7 8.0269 1.9462 -0.7131 10 6 8.3424 1.1157 0.4724 11 6 9.5514 0.2595 0.0379 12 1 10.2463 0.1333 0.8680 13 6 9.0814 -1.1038 -0.4731 14 6 10.2167 1.0591 -1.1016 15 6 10.2077 0.2460 -2.3976 16 6 11.6499 1.4355 -0.7209 17 7 12.2626 2.1936 -1.8145 18 6 13.5518 2.6408 -1.6994 19 1 14.1154 2.4384 -0.8006 20 6 14.1326 3.3587 -2.7358 21 7 15.3715 3.7890 -2.6249 22 14 13.1553 3.7154 -4.2874 23 1 12.4323 5.0031 -4.1319 24 1 14.0803 3.8037 -5.4456 25 1 12.1764 2.6227 -4.5179 26 6 9.3514 2.3284 -1.2558 27 7 5.5637 1.0286 0.5941 28 7 4.3405 0.7974 0.9234 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.8934 -0.5137 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9968 2.6640 -1.7273 37 1 7.4959 0.4774 0.7255 38 1 8.6092 1.7480 1.3193 39 1 9.9365 -1.6654 -0.8492 40 1 8.6142 -1.6561 0.3423 41 1 8.3585 -0.9613 -1.2764 42 1 10.7795 -0.6710 -2.2551 43 1 9.1804 -0.0039 -2.6626 44 1 10.6568 0.8336 -3.1983 45 1 12.2273 0.5291 -0.5385 46 1 11.6376 2.0463 0.1819 47 1 11.7552 2.3788 -2.6202 48 1 15.7772 4.2910 -3.3491 49 1 9.7758 3.1501 -0.6789 50 1 9.2662 2.6050 -2.3067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183026182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:03 Heat of formation + Delta-G solvation = 79.311230 kcal Electronic energy + Delta-G solvation = -29580.259714 eV Core-core repulsion = 25645.371019 eV Total energy + Delta-G solvation = -3934.888695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.50029 -40.17815 -38.18195 -36.48076 -34.93088 -33.30342 -32.89127 -31.55569 -31.16151 -29.91245 -27.89588 -27.28018 -25.89708 -25.50474 -23.68109 -23.11360 -22.54211 -21.90049 -20.90639 -19.77300 -18.66772 -18.02871 -17.29394 -16.60319 -16.48755 -15.97546 -15.60184 -15.39541 -15.00814 -14.51636 -14.34770 -14.14285 -14.07130 -13.78953 -13.53474 -13.41290 -13.16460 -12.81008 -12.70478 -12.61228 -12.48479 -12.29615 -12.07762 -12.02700 -11.79450 -11.52128 -11.45053 -11.31654 -11.23513 -10.99890 -10.80020 -10.68002 -10.32553 -10.31328 -10.14925 -10.05302 -9.90221 -9.56381 -9.50690 -8.84748 -8.57743 -7.17286 -5.71887 -3.06750 0.83845 1.52006 1.65203 2.93319 3.22425 3.42920 3.46522 3.50872 3.77459 3.93177 4.09182 4.31251 4.43583 4.57513 4.63573 4.64551 4.70400 4.70738 4.79966 4.91116 4.97456 5.05055 5.24564 5.33040 5.38766 5.44494 5.46476 5.52043 5.54411 5.59621 5.62367 5.75279 5.80238 5.92501 5.96647 6.00373 6.03853 6.07307 6.13827 6.25051 6.26429 6.39442 6.57925 6.61684 6.72806 6.80133 7.55261 7.67128 8.04519 8.13297 8.47207 9.26603 9.99182 10.19018 11.46562 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.002479 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.540506 B =11292.236316 C =11917.788000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.361 5.361 5 C 0.091 3.909 6 C -0.091 4.091 7 C 0.619 3.381 8 O -0.543 6.543 9 N -0.603 5.603 10 C 0.096 3.904 11 C -0.096 4.096 12 H 0.090 0.910 13 C -0.140 4.140 14 C -0.080 4.080 15 C -0.133 4.133 16 C 0.173 3.827 17 N -0.755 5.755 18 C -0.241 4.241 19 H 0.090 0.910 20 C 0.005 3.995 21 N -0.935 5.935 22 Si 0.880 3.120 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.276 1.276 26 C 0.117 3.883 27 N -0.202 5.202 28 N -0.066 5.066 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.204 0.796 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.082 0.918 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.649 -8.976 6.736 33.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.000 4.000 4 N -0.146 5.146 5 C -0.066 4.066 6 C -0.230 4.230 7 C 0.405 3.595 8 O -0.420 6.420 9 N -0.334 5.334 10 C -0.027 4.027 11 C -0.116 4.116 12 H 0.108 0.892 13 C -0.197 4.197 14 C -0.081 4.081 15 C -0.191 4.191 16 C 0.045 3.955 17 N -0.401 5.401 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.583 5.583 22 Si 0.711 3.289 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.005 4.005 27 N -0.075 5.075 28 N -0.046 5.046 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.221 0.779 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.050 0.950 46 H 0.048 0.952 47 H 0.195 0.805 48 H 0.069 0.931 49 H 0.101 0.899 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -31.569 -9.399 7.512 33.784 hybrid contribution -0.710 1.037 -2.018 2.378 sum -32.279 -8.362 5.493 33.794 Atomic orbital electron populations 1.21706 0.93793 1.02939 1.02368 1.21834 0.97001 0.94503 1.04286 1.22173 0.72498 1.00158 1.05199 1.50547 1.08811 1.35098 1.20170 1.23372 0.90101 0.97053 0.96048 1.21430 0.94370 1.08102 0.99120 1.16281 0.80500 0.79854 0.82815 1.90824 1.85981 1.39370 1.25848 1.48689 1.04880 1.50561 1.29311 1.22841 0.98826 0.93663 0.87327 1.22133 0.96364 0.94938 0.98165 0.89182 1.21886 1.01220 0.95810 1.00791 1.21772 0.96108 0.94400 0.95831 1.21885 1.00763 1.00009 0.96397 1.20698 0.88487 0.94857 0.91436 1.42759 1.13868 1.66369 1.17072 1.19048 0.87922 1.27517 1.02630 0.89211 1.24651 0.96042 1.00416 0.98001 1.69701 1.12763 1.42564 1.33258 0.86614 0.79516 0.78393 0.84419 1.20989 1.21770 1.20269 1.22564 0.80035 0.97111 1.00745 1.74624 1.12399 1.10238 1.10273 1.81971 0.93531 1.17418 1.11698 0.91581 0.92051 0.92205 0.91001 0.89975 0.88296 0.87678 0.77916 0.87582 0.91056 0.91994 0.92975 0.92724 0.92000 0.93133 0.92275 0.95044 0.95206 0.80521 0.93133 0.89936 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.33 9.91 37.16 0.37 0.04 16 2 C -0.14 -0.52 6.14 -26.72 -0.16 -0.69 16 3 C 0.12 0.45 6.54 -4.04 -0.03 0.42 16 4 N -0.36 -2.89 3.69 -61.06 -0.23 -3.12 16 5 C 0.09 0.83 11.27 -16.83 -0.19 0.64 16 6 C -0.09 -1.14 6.87 -83.55 -0.57 -1.71 16 7 C 0.62 9.46 7.91 -12.48 -0.10 9.36 16 8 O -0.54 -9.71 17.13 5.28 0.09 -9.62 16 9 N -0.60 -8.94 3.32 -170.53 -0.57 -9.51 16 10 C 0.10 1.22 6.22 -2.41 -0.01 1.20 16 11 C -0.10 -1.21 3.31 -89.22 -0.30 -1.51 16 12 H 0.09 1.06 7.71 -51.93 -0.40 0.66 16 13 C -0.14 -1.60 7.92 37.15 0.29 -1.30 16 14 C -0.08 -1.24 0.73 -153.11 -0.11 -1.35 16 15 C -0.13 -2.08 7.07 37.16 0.26 -1.82 16 16 C 0.17 3.27 4.87 -4.05 -0.02 3.25 16 17 N -0.75 -17.82 4.93 -59.91 -0.30 -18.12 16 18 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 19 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 21 N -0.93 -29.69 13.97 55.49 0.78 -28.91 16 22 Si 0.88 22.64 27.74 -169.99 -4.71 17.93 16 23 H -0.28 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 25 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 26 C 0.12 1.92 5.71 -2.41 -0.01 1.91 16 27 N -0.20 -2.53 9.36 32.85 0.31 -2.22 16 28 N -0.07 -0.73 13.65 60.35 0.82 0.09 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.11 8.14 -51.93 -0.42 -0.32 16 31 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.10 0.14 8.08 -51.93 -0.42 -0.28 16 36 H 0.20 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.11 1.31 5.17 -51.93 -0.27 1.04 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.70 6.84 -51.93 -0.36 0.34 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.67 6.76 -51.93 -0.35 0.32 16 42 H 0.06 0.91 6.89 -51.93 -0.36 0.55 16 43 H 0.05 0.73 6.71 -51.93 -0.35 0.39 16 44 H 0.06 1.05 6.78 -51.93 -0.35 0.70 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.03 0.57 8.10 -51.93 -0.42 0.15 16 47 H 0.36 8.47 4.05 -40.82 -0.17 8.31 16 48 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16 49 H 0.08 1.41 7.83 -51.93 -0.41 1.01 16 50 H 0.08 1.48 7.60 -51.93 -0.39 1.09 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -35.24 395.19 -6.75 -41.99 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.06 Total: 4.06 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.84 Total: 1.48 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.82 Total: -61.79 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.71 Total: 17.93 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.24 -6.75 -41.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183026182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.298 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds