Wall clock time and date at job start Tue Mar 31 2020 19:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53009 * 109.46946 * 2 1 4 4 N 1.46500 * 109.46746 * 179.97438 * 3 2 1 5 5 C 1.34813 * 126.59053 * 125.27436 * 4 3 2 6 6 C 1.36601 * 106.83903 * 180.10490 * 5 4 3 7 7 C 1.47523 * 125.76999 * 179.90012 * 6 5 4 8 8 O 1.21593 * 120.00173 * 359.71574 * 7 6 5 9 9 N 1.34777 * 119.99662 * 179.71876 * 7 6 5 10 10 C 1.48146 * 127.83986 * 0.02562 * 9 7 6 11 11 C 1.54392 * 104.62026 * 140.41734 * 10 9 7 12 12 H 1.08992 * 110.43549 * 142.78251 * 11 10 9 13 13 C 1.52995 * 110.34092 * 264.99846 * 11 10 9 14 14 C 1.54290 * 104.95738 * 23.86560 * 11 10 9 15 15 C 1.52995 * 110.34298 * 241.02555 * 14 11 10 16 16 C 1.52992 * 110.34238 * 118.87205 * 14 11 10 17 17 N 1.46499 * 109.47267 * 180.02562 * 16 14 11 18 18 C 1.36935 * 119.99938 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00518 * 359.72965 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99892 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99858 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47174 * 89.99644 * 22 20 18 24 24 H 1.48494 * 109.46800 * 209.99692 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99394 * 22 20 18 26 26 C 1.48150 * 127.83647 * 180.02562 * 9 7 6 27 27 N 1.34403 * 108.45586 * 359.63741 * 6 5 4 28 28 N 1.28761 * 109.52428 * 0.22414 * 27 6 5 29 29 H 1.08994 * 109.46781 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47056 * 300.00628 * 1 2 3 31 31 H 1.09004 * 109.46464 * 60.00321 * 1 2 3 32 32 H 1.08993 * 109.47391 * 240.00263 * 2 1 3 33 33 H 1.08996 * 109.47086 * 119.99560 * 2 1 3 34 34 H 1.09001 * 109.47091 * 59.99758 * 3 2 1 35 35 H 1.08996 * 109.46868 * 299.99693 * 3 2 1 36 36 H 1.08001 * 126.58529 * 359.96997 * 5 4 3 37 37 H 1.08999 * 110.40740 * 21.63044 * 10 9 7 38 38 H 1.08999 * 110.40914 * 259.19976 * 10 9 7 39 39 H 1.09000 * 109.47248 * 175.53249 * 13 11 10 40 40 H 1.08998 * 109.47323 * 295.53265 * 13 11 10 41 41 H 1.09005 * 109.47428 * 55.53483 * 13 11 10 42 42 H 1.09000 * 109.47035 * 298.52751 * 15 14 11 43 43 H 1.09000 * 109.47068 * 58.52622 * 15 14 11 44 44 H 1.09004 * 109.47243 * 178.52700 * 15 14 11 45 45 H 1.09004 * 109.47330 * 59.99913 * 16 14 11 46 46 H 1.09005 * 109.47124 * 300.00117 * 16 14 11 47 47 H 0.96999 * 119.99984 * 359.97438 * 17 16 14 48 48 H 0.97005 * 119.99715 * 180.02562 * 21 20 18 49 49 H 1.08999 * 110.40411 * 100.79819 * 26 9 7 50 50 H 1.08998 * 110.40803 * 338.37176 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3090 2.0675 -0.8828 6 6 5.5945 1.7990 -0.5068 7 6 6.8109 2.2787 -1.1898 8 8 6.7164 2.9739 -2.1829 9 7 8.0269 1.9462 -0.7131 10 6 8.3424 1.1157 0.4724 11 6 9.5514 0.2595 0.0379 12 1 10.2463 0.1333 0.8680 13 6 9.0814 -1.1038 -0.4731 14 6 10.2167 1.0591 -1.1016 15 6 10.2077 0.2460 -2.3976 16 6 11.6499 1.4355 -0.7209 17 7 12.2626 2.1936 -1.8145 18 6 13.5518 2.6408 -1.6994 19 1 14.1154 2.4384 -0.8006 20 6 14.1326 3.3587 -2.7358 21 7 15.3715 3.7890 -2.6249 22 14 13.1553 3.7154 -4.2874 23 1 12.4323 5.0031 -4.1319 24 1 14.0803 3.8037 -5.4456 25 1 12.1764 2.6227 -4.5179 26 6 9.3514 2.3284 -1.2558 27 7 5.5637 1.0286 0.5941 28 7 4.3405 0.7974 0.9234 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.8934 -0.5137 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9968 2.6640 -1.7273 37 1 7.4959 0.4774 0.7255 38 1 8.6092 1.7480 1.3193 39 1 9.9365 -1.6654 -0.8492 40 1 8.6142 -1.6561 0.3423 41 1 8.3585 -0.9613 -1.2764 42 1 10.7795 -0.6710 -2.2551 43 1 9.1804 -0.0039 -2.6626 44 1 10.6568 0.8336 -3.1983 45 1 12.2273 0.5291 -0.5385 46 1 11.6376 2.0463 0.1819 47 1 11.7552 2.3788 -2.6202 48 1 15.7772 4.2910 -3.3491 49 1 9.7758 3.1501 -0.6789 50 1 9.2662 2.6050 -2.3067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183026182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:02 Heat of formation + Delta-G solvation = 55.605985 kcal Electronic energy + Delta-G solvation = -29581.287651 eV Core-core repulsion = 25645.371019 eV Total energy + Delta-G solvation = -3935.916632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.28222 -41.36245 -39.40522 -36.96251 -36.62040 -34.62611 -33.58603 -33.29314 -32.07771 -31.38659 -28.82010 -28.14822 -27.26984 -26.63624 -24.98522 -24.09229 -23.53593 -22.57867 -22.13225 -20.74315 -20.17708 -19.49945 -18.44223 -17.44932 -17.40760 -16.97272 -16.65719 -16.51876 -15.97104 -15.77749 -15.60228 -15.50453 -15.20531 -14.95636 -14.62701 -14.42461 -14.38520 -13.91582 -13.72470 -13.64754 -13.50901 -13.19238 -13.15942 -13.00719 -12.91719 -12.72569 -12.55236 -12.48090 -12.37337 -12.12055 -12.03107 -11.83570 -11.74566 -11.50104 -11.43307 -11.29257 -11.25841 -11.16670 -10.96553 -10.41179 -9.74961 -9.26056 -8.01319 -5.32862 0.11790 0.57370 1.06916 1.36942 1.39160 1.45292 1.84400 2.16275 2.47969 3.05085 3.28943 3.30704 3.43060 3.56470 3.72313 3.78473 3.82645 3.91671 3.96419 4.14861 4.18834 4.25748 4.27480 4.29700 4.41276 4.47832 4.54355 4.61630 4.69828 4.72798 4.79354 4.82737 4.86084 4.91332 5.01489 5.06327 5.11294 5.11652 5.15646 5.20999 5.24139 5.31943 5.34747 5.41848 5.48414 5.57983 5.78726 6.23002 6.44684 6.77858 7.04019 7.09845 7.86932 8.04786 9.20278 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.002479 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.540506 B =11292.236316 C =11917.788000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.110 3.890 4 N -0.347 5.347 5 C 0.110 3.890 6 C -0.119 4.119 7 C 0.616 3.384 8 O -0.577 6.577 9 N -0.604 5.604 10 C 0.100 3.900 11 C -0.089 4.089 12 H 0.103 0.897 13 C -0.135 4.135 14 C -0.070 4.070 15 C -0.128 4.128 16 C 0.171 3.829 17 N -0.756 5.756 18 C -0.226 4.226 19 H 0.062 0.938 20 C -0.061 4.061 21 N -0.982 5.982 22 Si 0.943 3.057 23 H -0.282 1.282 24 H -0.294 1.294 25 H -0.255 1.255 26 C 0.118 3.882 27 N -0.217 5.217 28 N -0.083 5.083 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.139 0.861 36 H 0.234 0.766 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.031 0.969 47 H 0.364 0.636 48 H 0.257 0.743 49 H 0.071 0.929 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.141 -9.938 6.780 37.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.008 4.008 4 N -0.131 5.131 5 C -0.048 4.048 6 C -0.259 4.259 7 C 0.405 3.595 8 O -0.457 6.457 9 N -0.335 5.335 10 C -0.022 4.022 11 C -0.109 4.109 12 H 0.122 0.878 13 C -0.192 4.192 14 C -0.072 4.072 15 C -0.186 4.186 16 C 0.045 3.955 17 N -0.402 5.402 18 C -0.357 4.357 19 H 0.080 0.920 20 C -0.252 4.252 21 N -0.633 5.633 22 Si 0.771 3.229 23 H -0.208 1.208 24 H -0.221 1.221 25 H -0.180 1.180 26 C -0.005 4.005 27 N -0.090 5.090 28 N -0.063 5.063 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.157 0.843 36 H 0.250 0.750 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.197 0.803 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -35.131 -10.417 7.609 37.424 hybrid contribution 0.269 1.306 -1.912 2.331 sum -34.862 -9.111 5.697 36.481 Atomic orbital electron populations 1.21681 0.92355 1.03071 1.03279 1.21778 0.98112 0.94289 1.03028 1.22665 0.69880 1.00615 1.07660 1.50834 1.10079 1.33448 1.18760 1.23786 0.89039 0.95904 0.96103 1.21211 0.94397 1.10099 1.00169 1.16665 0.81189 0.79206 0.82467 1.90791 1.86570 1.40959 1.27392 1.48733 1.04318 1.50691 1.29747 1.22929 0.99043 0.93550 0.86663 1.22140 0.96258 0.95190 0.97293 0.87843 1.21842 1.01195 0.95001 1.01148 1.21632 0.93840 0.94548 0.97144 1.21844 1.01381 0.99905 0.95433 1.20864 0.90377 0.94243 0.90053 1.42781 1.12347 1.66619 1.18462 1.19052 0.89362 1.26073 1.01187 0.92021 1.25386 0.97102 1.01245 1.01515 1.69864 1.14755 1.44310 1.34397 0.85586 0.78347 0.78732 0.80229 1.20843 1.22074 1.17977 1.22390 0.81379 0.97245 0.99453 1.74565 1.13319 1.10659 1.10494 1.81894 0.93498 1.18180 1.12719 0.91906 0.91384 0.91030 0.91874 0.91676 0.86741 0.84347 0.74978 0.86785 0.90494 0.91661 0.91179 0.93551 0.90954 0.92067 0.94622 0.94617 0.95054 0.80256 0.93444 0.91107 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.27 9.91 71.98 0.71 0.44 16 2 C -0.13 -0.72 6.14 30.60 0.19 -0.53 16 3 C 0.11 0.47 6.54 86.38 0.56 1.03 16 4 N -0.35 -4.67 3.69 -347.08 -1.28 -5.95 16 5 C 0.11 1.73 11.27 83.85 0.95 2.68 16 6 C -0.12 -2.83 6.87 40.82 0.28 -2.54 16 7 C 0.62 18.46 7.91 86.69 0.69 19.15 16 8 O -0.58 -20.50 17.13 -4.01 -0.07 -20.57 16 9 N -0.60 -17.52 3.32 -811.70 -2.69 -20.21 16 10 C 0.10 2.39 6.22 86.54 0.54 2.93 16 11 C -0.09 -2.07 3.31 -9.89 -0.03 -2.11 16 12 H 0.10 2.18 7.71 -2.39 -0.02 2.16 16 13 C -0.13 -2.73 7.92 71.98 0.57 -2.16 16 14 C -0.07 -2.11 0.73 -51.28 -0.04 -2.14 16 15 C -0.13 -3.84 7.07 71.98 0.51 -3.33 16 16 C 0.17 6.35 4.87 86.38 0.42 6.77 16 17 N -0.76 -35.59 4.93 -343.45 -1.69 -37.29 16 18 C -0.23 -12.99 10.47 84.04 0.88 -12.11 16 19 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 20 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 21 N -0.98 -63.93 13.97 21.65 0.30 -63.63 16 22 Si 0.94 47.24 27.74 68.60 1.90 49.14 16 23 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 24 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 25 H -0.25 -11.72 6.52 99.48 0.65 -11.07 16 26 C 0.12 3.85 5.71 86.53 0.49 4.35 16 27 N -0.22 -5.13 9.36 -49.99 -0.47 -5.60 16 28 N -0.08 -1.69 13.65 37.02 0.51 -1.19 16 29 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.07 0.05 8.14 -2.39 -0.02 0.04 16 31 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.14 -0.27 8.08 -2.39 -0.02 -0.29 16 36 H 0.23 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.11 2.61 5.17 -2.39 -0.01 2.60 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.29 6.84 -2.39 -0.02 1.28 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.05 1.03 6.76 -2.38 -0.02 1.01 16 42 H 0.07 1.99 6.89 -2.39 -0.02 1.98 16 43 H 0.06 1.69 6.71 -2.39 -0.02 1.68 16 44 H 0.03 1.22 6.78 -2.38 -0.02 1.21 16 45 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.03 1.18 8.10 -2.38 -0.02 1.16 16 47 H 0.36 16.84 4.05 -92.71 -0.38 16.47 16 48 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 49 H 0.07 2.45 7.83 -2.39 -0.02 2.43 16 50 H 0.06 2.29 7.60 -2.39 -0.02 2.27 16 Total: -1.00 -78.10 395.19 4.20 -73.90 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.51 Total: 22.20 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 7.19 Total: 9.20 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -5.33 Total: -133.88 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.07 Total: -20.57 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.90 Total: 49.14 kcal Total: -78.10 4.20 -73.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183026182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.507 kcal (2) G-P(sol) polarization free energy of solvation -78.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds