Wall clock time and date at job start Tue Mar 31 2020 19:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47387 * 2 1 4 4 N 1.46502 * 109.47258 * 179.97438 * 3 2 1 5 5 C 1.34811 * 126.59778 * 125.00181 * 4 3 2 6 6 C 1.36587 * 106.84078 * 179.97438 * 5 4 3 7 7 C 1.47522 * 125.76968 * 179.97438 * 6 5 4 8 8 O 1.21599 * 120.00055 * 353.15061 * 7 6 5 9 9 N 1.34776 * 120.00310 * 173.14860 * 7 6 5 10 10 C 1.47211 * 120.81068 * 353.93229 * 9 7 6 11 11 C 1.53192 * 108.85229 * 126.33726 * 10 9 7 12 12 C 1.53041 * 109.31711 * 54.65213 * 11 10 9 13 13 H 1.09001 * 109.45967 * 58.65017 * 12 11 10 14 14 C 1.52998 * 109.46214 * 178.61458 * 12 11 10 15 15 N 1.46503 * 109.46844 * 295.06783 * 14 12 11 16 16 C 1.36937 * 119.99589 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00247 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99856 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99718 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99863 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47124 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46905 * 120.00452 * 20 18 16 23 23 H 1.48504 * 109.46911 * 240.00162 * 20 18 16 24 24 C 1.53044 * 109.53463 * 298.63728 * 12 11 10 25 25 H 1.09006 * 109.52223 * 181.33211 * 24 12 11 26 26 C 1.53001 * 109.49561 * 301.41076 * 24 12 11 27 27 C 1.46919 * 120.63378 * 173.78697 * 9 7 6 28 28 N 1.34399 * 108.46063 * 0.23760 * 6 5 4 29 29 N 1.28760 * 109.52468 * 359.59144 * 28 6 5 30 30 H 1.09005 * 109.46791 * 59.99962 * 1 2 3 31 31 H 1.09002 * 109.47430 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47578 * 300.00115 * 1 2 3 33 33 H 1.08997 * 109.47578 * 239.99885 * 2 1 3 34 34 H 1.09005 * 109.46791 * 120.00038 * 2 1 3 35 35 H 1.08997 * 109.46856 * 59.99443 * 3 2 1 36 36 H 1.08996 * 109.46986 * 299.99836 * 3 2 1 37 37 H 1.08004 * 126.57636 * 359.97438 * 5 4 3 38 38 H 1.09001 * 109.53504 * 6.53178 * 10 9 7 39 39 H 1.08998 * 109.56234 * 246.15552 * 10 9 7 40 40 H 1.09006 * 109.49793 * 294.70050 * 11 10 9 41 41 H 1.09001 * 109.52209 * 174.61786 * 11 10 9 42 42 H 1.08994 * 109.47209 * 55.06767 * 14 12 11 43 43 H 1.09002 * 109.47061 * 175.06829 * 14 12 11 44 44 H 0.96996 * 119.99960 * 359.97438 * 15 14 12 45 45 H 0.97002 * 119.99534 * 179.97438 * 19 18 16 46 46 H 1.08995 * 109.47189 * 179.84301 * 26 24 12 47 47 H 1.09008 * 109.46942 * 299.83787 * 26 24 12 48 48 H 1.09002 * 109.47507 * 59.83862 * 26 24 12 49 49 H 1.08998 * 109.58949 * 113.82678 * 27 9 7 50 50 H 1.09000 * 109.58919 * 353.54559 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.3092 2.0631 -0.8857 6 6 5.5945 1.7988 -0.5066 7 6 6.8109 2.2774 -1.1903 8 8 6.7209 2.8654 -2.2508 9 7 8.0222 2.0629 -0.6395 10 6 8.1461 1.4727 0.7034 11 6 9.0689 0.2525 0.6246 12 6 10.4016 0.6654 -0.0043 13 1 10.8571 1.4538 0.5948 14 6 11.3384 -0.5432 -0.0530 15 7 11.6657 -0.9626 1.3120 16 6 12.4957 -2.0319 1.5192 17 1 12.9093 -2.5658 0.6765 18 6 12.8063 -2.4290 2.8126 19 7 12.3034 -1.7774 3.8397 20 14 13.9390 -3.8873 3.0953 21 1 14.3681 -4.4418 1.7862 22 1 15.1326 -3.4458 3.8606 23 1 13.2172 -4.9331 3.8638 24 6 10.1593 1.1803 -1.4250 25 1 11.1112 1.4521 -1.8813 26 6 9.4882 0.0858 -2.2573 27 6 9.2488 2.4110 -1.3695 28 7 5.5636 1.0242 0.5913 29 7 4.3405 0.7974 0.9237 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 3.9969 2.6557 -1.7330 38 1 7.1625 1.1648 1.0583 39 1 8.5700 2.2078 1.3874 40 1 8.6010 -0.5186 0.0123 41 1 9.2449 -0.1364 1.6275 42 1 10.8471 -1.3630 -0.5770 43 1 12.2538 -0.2724 -0.5793 44 1 11.2951 -0.4824 2.0689 45 1 12.5201 -2.0552 4.7435 46 1 9.3132 0.4538 -3.2682 47 1 10.1364 -0.7897 -2.2965 48 1 8.5369 -0.1866 -1.8001 49 1 9.7627 3.2226 -0.8545 50 1 8.9949 2.7238 -2.3824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185381226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:44 Heat of formation + Delta-G solvation = 74.629461 kcal Electronic energy + Delta-G solvation = -29472.537071 eV Core-core repulsion = 25537.445359 eV Total energy + Delta-G solvation = -3935.091712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.50151 -40.06113 -37.92158 -36.44822 -34.86287 -33.46522 -32.86249 -31.72448 -30.93460 -30.19539 -27.76434 -26.88727 -26.56322 -24.06826 -23.35272 -22.98422 -22.71478 -21.85305 -21.18254 -20.08517 -18.40675 -17.76746 -16.98810 -16.66249 -16.30552 -15.99539 -15.59674 -15.26806 -15.07999 -14.65599 -14.23332 -14.09555 -13.92106 -13.79899 -13.62855 -13.43791 -13.17446 -12.80498 -12.70538 -12.65980 -12.36765 -12.31838 -12.13702 -11.95273 -11.49824 -11.44761 -11.35413 -11.00051 -10.84896 -10.84250 -10.68301 -10.62231 -10.25803 -10.18229 -10.04870 -9.90244 -9.55591 -9.53715 -9.45691 -8.78596 -8.44449 -6.81900 -5.69318 -2.96691 0.89409 1.53570 1.71262 3.00447 3.21655 3.47917 3.53443 3.55709 3.83418 3.97305 4.16152 4.37546 4.49801 4.63808 4.65472 4.70764 4.76803 4.95779 4.98373 5.10571 5.11104 5.14673 5.28583 5.40890 5.42345 5.48123 5.52421 5.62102 5.64411 5.78833 5.81119 5.86126 5.93052 6.00750 6.05715 6.14999 6.22191 6.32756 6.37107 6.47561 6.51853 6.63697 6.71647 6.81801 6.96068 7.07522 7.43287 7.75043 7.77651 8.14534 8.50273 9.61219 10.21078 10.55718 11.53831 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.002604 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.667428 B =10751.127076 C =12293.767035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.360 5.360 5 C 0.090 3.910 6 C -0.094 4.094 7 C 0.603 3.397 8 O -0.550 6.550 9 N -0.586 5.586 10 C 0.070 3.930 11 C -0.120 4.120 12 C -0.091 4.091 13 H 0.070 0.930 14 C 0.159 3.841 15 N -0.732 5.732 16 C -0.234 4.234 17 H 0.069 0.931 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.097 4.097 25 H 0.081 0.919 26 C -0.145 4.145 27 C 0.117 3.883 28 N -0.198 5.198 29 N -0.061 5.061 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.203 0.797 38 H 0.136 0.864 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.021 0.979 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.253 0.747 46 H 0.046 0.954 47 H 0.061 0.939 48 H 0.055 0.945 49 H 0.068 0.932 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.187 10.570 -11.144 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C 0.000 4.000 4 N -0.145 5.145 5 C -0.067 4.067 6 C -0.233 4.233 7 C 0.389 3.611 8 O -0.428 6.428 9 N -0.317 5.317 10 C -0.053 4.053 11 C -0.158 4.158 12 C -0.110 4.110 13 H 0.089 0.911 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.366 4.366 17 H 0.087 0.913 18 C -0.212 4.212 19 N -0.583 5.583 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 C -0.117 4.117 25 H 0.100 0.900 26 C -0.202 4.202 27 C -0.005 4.005 28 N -0.071 5.071 29 N -0.041 5.041 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.220 0.780 38 H 0.153 0.847 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.039 0.961 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.086 0.914 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -24.127 9.862 -10.483 28.094 hybrid contribution 0.483 -0.095 -0.280 0.566 sum -23.645 9.766 -10.763 27.754 Atomic orbital electron populations 1.21703 0.93819 1.02958 1.02286 1.21845 0.96979 0.94496 1.04435 1.22173 0.72506 1.00196 1.05137 1.50580 1.08826 1.35141 1.19999 1.23336 0.90069 0.97286 0.95991 1.21496 0.94578 1.08024 0.99230 1.16777 0.81692 0.78923 0.83703 1.90770 1.86299 1.43210 1.22562 1.47956 1.04788 1.60616 1.18343 1.22915 1.05162 0.95555 0.81649 1.21873 0.94425 0.96690 1.02799 1.21341 0.96172 0.98855 0.94591 0.91149 1.20709 0.94440 0.93069 0.88656 1.42395 1.57441 1.36346 1.01403 1.19278 1.19967 1.05472 0.91876 0.91286 1.24723 1.01173 0.99722 0.95566 1.69670 1.48697 1.42295 0.97615 0.86140 0.80279 0.82379 0.77560 1.20646 1.21973 1.21942 1.21466 0.98398 0.95043 0.96794 0.90045 1.21866 1.01062 0.98732 0.98580 1.21722 0.84191 0.96823 0.97762 1.74286 1.11825 1.10602 1.10369 1.82060 0.93658 1.16630 1.11716 0.92275 0.91566 0.92058 0.90970 0.89848 0.88265 0.87726 0.77977 0.84716 0.91854 0.91595 0.89596 0.96150 0.96638 0.78254 0.93661 0.93449 0.91966 0.92552 0.91392 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.43 9.91 37.16 0.37 -0.07 16 2 C -0.14 -0.65 6.14 -26.73 -0.16 -0.81 16 3 C 0.12 0.51 6.54 -4.04 -0.03 0.48 16 4 N -0.36 -3.08 3.69 -61.06 -0.23 -3.30 16 5 C 0.09 0.82 11.28 -16.84 -0.19 0.63 16 6 C -0.09 -1.19 6.75 -83.55 -0.56 -1.76 16 7 C 0.60 8.63 7.68 -12.48 -0.10 8.53 16 8 O -0.55 -8.71 16.31 5.28 0.09 -8.62 16 9 N -0.59 -8.25 2.43 -173.78 -0.42 -8.67 16 10 C 0.07 1.02 6.33 -3.55 -0.02 0.99 16 11 C -0.12 -1.98 4.91 -26.61 -0.13 -2.11 16 12 C -0.09 -1.51 1.96 -90.58 -0.18 -1.69 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.16 3.27 5.19 -4.04 -0.02 3.25 16 15 N -0.73 -18.83 5.32 -59.91 -0.32 -19.15 16 16 C -0.23 -6.71 9.99 -15.06 -0.15 -6.86 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 19 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 20 Si 0.90 22.89 29.55 -169.99 -5.02 17.87 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 24 C -0.10 -1.36 2.72 -90.50 -0.25 -1.60 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 C -0.15 -2.04 8.38 37.16 0.31 -1.73 16 27 C 0.12 1.55 5.80 -3.71 -0.02 1.53 16 28 N -0.20 -2.72 8.72 32.84 0.29 -2.43 16 29 N -0.06 -0.75 13.65 60.35 0.82 0.07 16 30 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.15 8.08 -51.93 -0.42 -0.27 16 37 H 0.20 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.14 2.00 3.70 -116.48 -0.43 1.57 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.13 6.33 -51.93 -0.33 0.80 16 41 H 0.09 1.63 7.15 -51.93 -0.37 1.25 16 42 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 10.30 6.84 -40.82 -0.28 10.02 16 45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.91 6.59 -51.92 -0.34 0.56 16 48 H 0.06 0.85 5.97 -51.93 -0.31 0.54 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.09 1.19 7.04 -51.93 -0.37 0.82 16 LS Contribution 393.47 15.07 5.93 5.93 Total: -1.00 -34.55 393.47 -7.60 -42.16 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -8.24 Total: 5.89 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.23 Total: -1.78 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.87 Total: -61.43 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.55 -7.60 -42.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185381226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.788 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds