Wall clock time and date at job start Tue Mar 31 2020 19:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47387 * 2 1 4 4 N 1.46502 * 109.47258 * 179.97438 * 3 2 1 5 5 C 1.34811 * 126.59778 * 125.00181 * 4 3 2 6 6 C 1.36587 * 106.84078 * 179.97438 * 5 4 3 7 7 C 1.47522 * 125.76968 * 179.97438 * 6 5 4 8 8 O 1.21599 * 120.00055 * 353.15061 * 7 6 5 9 9 N 1.34776 * 120.00310 * 173.14860 * 7 6 5 10 10 C 1.47211 * 120.81068 * 353.93229 * 9 7 6 11 11 C 1.53192 * 108.85229 * 126.33726 * 10 9 7 12 12 C 1.53041 * 109.31711 * 54.65213 * 11 10 9 13 13 H 1.09001 * 109.45967 * 58.65017 * 12 11 10 14 14 C 1.52998 * 109.46214 * 178.61458 * 12 11 10 15 15 N 1.46503 * 109.46844 * 295.06783 * 14 12 11 16 16 C 1.36937 * 119.99589 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00247 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99856 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99718 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99863 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47124 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46905 * 120.00452 * 20 18 16 23 23 H 1.48504 * 109.46911 * 240.00162 * 20 18 16 24 24 C 1.53044 * 109.53463 * 298.63728 * 12 11 10 25 25 H 1.09006 * 109.52223 * 181.33211 * 24 12 11 26 26 C 1.53001 * 109.49561 * 301.41076 * 24 12 11 27 27 C 1.46919 * 120.63378 * 173.78697 * 9 7 6 28 28 N 1.34399 * 108.46063 * 0.23760 * 6 5 4 29 29 N 1.28760 * 109.52468 * 359.59144 * 28 6 5 30 30 H 1.09005 * 109.46791 * 59.99962 * 1 2 3 31 31 H 1.09002 * 109.47430 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47578 * 300.00115 * 1 2 3 33 33 H 1.08997 * 109.47578 * 239.99885 * 2 1 3 34 34 H 1.09005 * 109.46791 * 120.00038 * 2 1 3 35 35 H 1.08997 * 109.46856 * 59.99443 * 3 2 1 36 36 H 1.08996 * 109.46986 * 299.99836 * 3 2 1 37 37 H 1.08004 * 126.57636 * 359.97438 * 5 4 3 38 38 H 1.09001 * 109.53504 * 6.53178 * 10 9 7 39 39 H 1.08998 * 109.56234 * 246.15552 * 10 9 7 40 40 H 1.09006 * 109.49793 * 294.70050 * 11 10 9 41 41 H 1.09001 * 109.52209 * 174.61786 * 11 10 9 42 42 H 1.08994 * 109.47209 * 55.06767 * 14 12 11 43 43 H 1.09002 * 109.47061 * 175.06829 * 14 12 11 44 44 H 0.96996 * 119.99960 * 359.97438 * 15 14 12 45 45 H 0.97002 * 119.99534 * 179.97438 * 19 18 16 46 46 H 1.08995 * 109.47189 * 179.84301 * 26 24 12 47 47 H 1.09008 * 109.46942 * 299.83787 * 26 24 12 48 48 H 1.09002 * 109.47507 * 59.83862 * 26 24 12 49 49 H 1.08998 * 109.58949 * 113.82678 * 27 9 7 50 50 H 1.09000 * 109.58919 * 353.54559 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.3092 2.0631 -0.8857 6 6 5.5945 1.7988 -0.5066 7 6 6.8109 2.2774 -1.1903 8 8 6.7209 2.8654 -2.2508 9 7 8.0222 2.0629 -0.6395 10 6 8.1461 1.4727 0.7034 11 6 9.0689 0.2525 0.6246 12 6 10.4016 0.6654 -0.0043 13 1 10.8571 1.4538 0.5948 14 6 11.3384 -0.5432 -0.0530 15 7 11.6657 -0.9626 1.3120 16 6 12.4957 -2.0319 1.5192 17 1 12.9093 -2.5658 0.6765 18 6 12.8063 -2.4290 2.8126 19 7 12.3034 -1.7774 3.8397 20 14 13.9390 -3.8873 3.0953 21 1 14.3681 -4.4418 1.7862 22 1 15.1326 -3.4458 3.8606 23 1 13.2172 -4.9331 3.8638 24 6 10.1593 1.1803 -1.4250 25 1 11.1112 1.4521 -1.8813 26 6 9.4882 0.0858 -2.2573 27 6 9.2488 2.4110 -1.3695 28 7 5.5636 1.0242 0.5913 29 7 4.3405 0.7974 0.9237 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 3.9969 2.6557 -1.7330 38 1 7.1625 1.1648 1.0583 39 1 8.5700 2.2078 1.3874 40 1 8.6010 -0.5186 0.0123 41 1 9.2449 -0.1364 1.6275 42 1 10.8471 -1.3630 -0.5770 43 1 12.2538 -0.2724 -0.5793 44 1 11.2951 -0.4824 2.0689 45 1 12.5201 -2.0552 4.7435 46 1 9.3132 0.4538 -3.2682 47 1 10.1364 -0.7897 -2.2965 48 1 8.5369 -0.1866 -1.8001 49 1 9.7627 3.2226 -0.8545 50 1 8.9949 2.7238 -2.3824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185381226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:43 Heat of formation + Delta-G solvation = 52.514052 kcal Electronic energy + Delta-G solvation = -29473.496067 eV Core-core repulsion = 25537.445359 eV Total energy + Delta-G solvation = -3936.050708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.32685 -41.20563 -39.16838 -36.99133 -36.52432 -34.84741 -33.63211 -33.20001 -31.95359 -31.81483 -28.48379 -28.41777 -27.52600 -25.67808 -24.53738 -24.04746 -23.69134 -22.74159 -22.33228 -21.09997 -19.71254 -19.04495 -18.56196 -17.52513 -17.15788 -16.95349 -16.76401 -16.45612 -16.01455 -15.86708 -15.49710 -15.43938 -15.30238 -14.99315 -14.77766 -14.46606 -14.31208 -14.10787 -13.68557 -13.64220 -13.52896 -13.14950 -12.98500 -12.96128 -12.85606 -12.64788 -12.61172 -12.34225 -12.17286 -12.01399 -11.94287 -11.89073 -11.75586 -11.51232 -11.36845 -11.28625 -11.20595 -10.93044 -10.65237 -10.37448 -9.58729 -8.95241 -7.93087 -5.20941 0.15487 0.56657 1.11005 1.46982 1.47976 1.58034 1.96397 2.19668 2.57095 3.09384 3.31737 3.40174 3.64777 3.77228 3.83185 3.83986 3.87875 3.94799 4.14256 4.15071 4.19614 4.29253 4.31744 4.37237 4.48045 4.49382 4.57203 4.65848 4.69726 4.77044 4.79072 4.81546 4.87709 5.00864 5.06148 5.11602 5.16286 5.21076 5.21829 5.25655 5.29690 5.32547 5.41161 5.49982 5.51629 5.57262 5.70975 6.29710 6.32987 6.83483 7.10354 7.35805 8.13319 8.36954 9.30756 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.002604 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.667428 B =10751.127076 C =12293.767035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.111 3.889 4 N -0.346 5.346 5 C 0.113 3.887 6 C -0.125 4.125 7 C 0.604 3.396 8 O -0.567 6.567 9 N -0.589 5.589 10 C 0.080 3.920 11 C -0.110 4.110 12 C -0.080 4.080 13 H 0.066 0.934 14 C 0.160 3.840 15 N -0.743 5.743 16 C -0.242 4.242 17 H 0.073 0.927 18 C -0.077 4.077 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.267 1.267 22 H -0.292 1.292 23 H -0.293 1.293 24 C -0.089 4.089 25 H 0.098 0.902 26 C -0.140 4.140 27 C 0.119 3.881 28 N -0.226 5.226 29 N -0.090 5.090 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.114 0.886 36 H 0.144 0.856 37 H 0.241 0.759 38 H 0.137 0.863 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.041 0.959 49 H 0.081 0.919 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.579 11.581 -12.939 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.007 4.007 4 N -0.131 5.131 5 C -0.045 4.045 6 C -0.265 4.265 7 C 0.391 3.609 8 O -0.446 6.446 9 N -0.319 5.319 10 C -0.043 4.043 11 C -0.148 4.148 12 C -0.099 4.099 13 H 0.085 0.915 14 C 0.033 3.967 15 N -0.386 5.386 16 C -0.374 4.374 17 H 0.091 0.909 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.801 3.199 21 H -0.192 1.192 22 H -0.219 1.219 23 H -0.221 1.221 24 C -0.109 4.109 25 H 0.116 0.884 26 C -0.197 4.197 27 C -0.003 4.003 28 N -0.098 5.098 29 N -0.070 5.070 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.132 0.868 36 H 0.162 0.838 37 H 0.257 0.743 38 H 0.154 0.846 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.207 0.793 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.060 0.940 49 H 0.099 0.901 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -25.543 10.862 -12.303 30.361 hybrid contribution 0.786 -0.402 0.206 0.906 sum -24.758 10.460 -12.096 29.473 Atomic orbital electron populations 1.21673 0.92190 1.03009 1.03395 1.21792 0.98276 0.94582 1.02834 1.22668 0.69882 1.00345 1.07840 1.50879 1.10118 1.33443 1.18630 1.23865 0.88780 0.95896 0.95957 1.21535 0.95378 1.09575 0.99971 1.16960 0.82045 0.78413 0.83457 1.90748 1.86610 1.44116 1.23175 1.47967 1.05324 1.60586 1.18053 1.22755 1.04708 0.94604 0.82268 1.21705 0.94936 0.97437 1.00737 1.21226 0.95040 0.96992 0.96647 0.91515 1.20842 0.95260 0.94491 0.86081 1.42595 1.57043 1.35813 1.03121 1.19662 1.19734 1.05935 0.92095 0.90922 1.25553 1.03210 1.02717 0.95430 1.69826 1.50339 1.44024 0.97779 0.85087 0.78062 0.78962 0.77745 1.19174 1.21942 1.22069 1.21422 0.99507 0.95323 0.94631 0.88417 1.21803 1.00070 0.98465 0.99350 1.21761 0.83776 0.96547 0.98211 1.74188 1.12837 1.11501 1.11287 1.81977 0.93754 1.18041 1.13186 0.90672 0.92119 0.91396 0.91909 0.92203 0.86770 0.83801 0.74255 0.84612 0.91491 0.92551 0.92583 0.96446 0.96346 0.79314 0.94047 0.91832 0.92797 0.93961 0.90123 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.55 9.91 71.98 0.71 0.16 16 2 C -0.14 -1.09 6.14 30.59 0.19 -0.90 16 3 C 0.11 0.64 6.54 86.38 0.56 1.20 16 4 N -0.35 -5.28 3.69 -347.10 -1.28 -6.56 16 5 C 0.11 1.79 11.28 83.85 0.95 2.73 16 6 C -0.12 -3.06 6.75 40.81 0.28 -2.78 16 7 C 0.60 16.68 7.68 86.69 0.67 17.35 16 8 O -0.57 -16.99 16.31 -4.03 -0.07 -17.06 16 9 N -0.59 -16.19 2.43 -821.96 -1.99 -18.19 16 10 C 0.08 2.36 6.33 86.31 0.55 2.90 16 11 C -0.11 -3.76 4.91 30.67 0.15 -3.61 16 12 C -0.08 -2.68 1.96 -10.77 -0.02 -2.70 16 13 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.16 6.63 5.19 86.38 0.45 7.08 16 15 N -0.74 -39.07 5.32 -343.45 -1.83 -40.89 16 16 C -0.24 -14.00 9.99 84.03 0.84 -13.16 16 17 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 19 N -0.97 -60.74 13.06 21.65 0.28 -60.45 16 20 Si 0.97 47.45 29.55 68.60 2.03 49.48 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 24 C -0.09 -2.38 2.72 -10.71 -0.03 -2.41 16 25 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 26 C -0.14 -3.80 8.38 71.98 0.60 -3.19 16 27 C 0.12 2.96 5.80 86.36 0.50 3.46 16 28 N -0.23 -6.27 8.72 -50.00 -0.44 -6.71 16 29 N -0.09 -2.21 13.65 37.02 0.51 -1.71 16 30 H 0.07 0.07 8.14 -2.38 -0.02 0.05 16 31 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.14 -0.24 8.08 -2.39 -0.02 -0.26 16 37 H 0.24 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.14 4.16 3.70 -85.91 -0.32 3.84 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 2.02 6.33 -2.38 -0.02 2.00 16 41 H 0.06 2.25 7.15 -2.39 -0.02 2.23 16 42 H 0.02 0.75 6.74 -2.39 -0.02 0.73 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.37 20.83 6.84 -92.71 -0.63 20.20 16 45 H 0.25 15.18 8.31 -92.71 -0.77 14.40 16 46 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.05 1.54 6.59 -2.38 -0.02 1.52 16 48 H 0.04 1.26 5.97 -2.39 -0.01 1.25 16 49 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.10 2.33 7.04 -2.39 -0.02 2.31 16 Total: -1.00 -75.94 393.47 4.07 -71.86 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.00 Total: 28.18 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 6.86 Total: 2.04 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -4.75 Total: -134.51 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.07 Total: -17.06 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -75.94 4.07 -71.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185381226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.377 kcal (2) G-P(sol) polarization free energy of solvation -75.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds