Wall clock time and date at job start Tue Mar 31 2020 18:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47335 * 2 1 4 4 H 1.08997 * 109.46924 * 305.00309 * 3 2 1 5 5 C 1.53004 * 109.47141 * 64.99897 * 3 2 1 6 6 C 1.50697 * 109.47506 * 184.99821 * 3 2 1 7 7 O 1.21274 * 120.00269 * 263.41154 * 6 3 2 8 8 N 1.34776 * 119.99758 * 83.40683 * 6 3 2 9 9 C 1.46933 * 120.63074 * 4.77065 * 8 6 3 10 10 C 1.52757 * 109.00618 * 233.57906 * 9 8 6 11 11 C 1.53036 * 109.38752 * 305.58841 * 10 9 8 12 12 C 1.53037 * 109.53841 * 61.23885 * 11 10 9 13 13 H 1.09001 * 109.50085 * 58.58672 * 12 11 10 14 14 N 1.46500 * 109.49859 * 178.68654 * 12 11 10 15 15 C 1.35313 * 125.86829 * 34.83770 * 14 12 11 16 16 C 1.35350 * 106.17808 * 180.02562 * 15 14 12 17 17 C 1.50692 * 126.75682 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47183 * 94.99814 * 17 16 15 19 19 C 1.36935 * 120.00259 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99845 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00167 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99966 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99845 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47290 * 60.00535 * 23 21 19 25 25 H 1.48499 * 109.47181 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47296 * 299.99899 * 23 21 19 27 27 N 1.33777 * 106.49311 * 359.97438 * 16 15 14 28 28 N 1.28638 * 108.88747 * 359.73804 * 27 16 15 29 29 C 1.46924 * 120.63467 * 185.04522 * 8 6 3 30 30 H 1.09008 * 109.47095 * 299.99895 * 1 2 3 31 31 H 1.08994 * 109.47254 * 59.99997 * 1 2 3 32 32 H 1.08998 * 109.47237 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47108 * 239.99925 * 2 1 3 34 34 H 1.09008 * 109.47277 * 119.99810 * 2 1 3 35 35 H 1.09000 * 109.47089 * 173.91624 * 5 3 2 36 36 H 1.09005 * 109.46920 * 53.91922 * 5 3 2 37 37 H 1.09003 * 109.47263 * 293.92089 * 5 3 2 38 38 H 1.09005 * 109.58341 * 353.41418 * 9 8 6 39 39 H 1.08995 * 109.58496 * 113.83986 * 9 8 6 40 40 H 1.09004 * 109.56287 * 185.54983 * 10 9 8 41 41 H 1.09007 * 109.38690 * 65.51761 * 10 9 8 42 42 H 1.08999 * 109.45893 * 301.22000 * 11 10 9 43 43 H 1.08997 * 109.46082 * 181.26254 * 11 10 9 44 44 H 1.07996 * 126.91223 * 0.02562 * 15 14 12 45 45 H 1.08995 * 109.47898 * 215.00305 * 17 16 15 46 46 H 1.09004 * 109.47051 * 335.00617 * 17 16 15 47 47 H 0.97002 * 119.99895 * 0.02562 * 18 17 16 48 48 H 0.96998 * 120.00148 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.58962 * 246.16301 * 29 8 6 50 50 H 1.09003 * 109.58145 * 6.58068 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.2321 1.5352 0.8692 8 7 4.1180 1.3449 -1.3381 9 6 3.2983 1.3389 -2.5575 10 6 3.6522 0.1073 -3.3889 11 6 5.1608 0.0838 -3.6452 12 6 5.9054 -0.0018 -2.3110 13 1 5.5935 -0.8995 -1.7772 14 7 7.3482 -0.0558 -2.5588 15 6 8.0061 0.5818 -3.5546 16 6 9.3123 0.2570 -3.4121 17 6 10.4558 0.7175 -4.2788 18 7 11.0849 1.8936 -3.6730 19 6 12.1530 2.4914 -4.2869 20 1 12.5314 2.0960 -5.2181 21 6 12.7495 3.6055 -3.7125 22 7 12.2888 4.0870 -2.5776 23 14 14.2061 4.4213 -4.5505 24 1 13.8028 4.8870 -5.9017 25 1 14.6569 5.5816 -3.7407 26 1 15.3170 3.4437 -4.6748 27 7 9.3887 -0.5525 -2.3497 28 7 8.2088 -0.7134 -1.8632 29 6 5.5774 1.2343 -1.4676 30 1 -0.3634 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 2.0891 3.1165 1.3551 36 1 1.9782 1.5285 2.1517 37 1 0.5501 2.2220 1.3467 38 1 2.2426 1.3051 -2.2878 39 1 3.5006 2.2389 -3.1382 40 1 3.1220 0.1447 -4.3406 41 1 3.3614 -0.7918 -2.8455 42 1 5.4546 0.9944 -4.1673 43 1 5.4116 -0.7825 -4.2573 44 1 7.5755 1.2213 -4.3108 45 1 11.1905 -0.0829 -4.3667 46 1 10.0800 0.9760 -5.2689 47 1 10.7449 2.2489 -2.8369 48 1 12.7058 4.8653 -2.1760 49 1 5.9694 2.1255 -1.9576 50 1 6.0251 1.1316 -0.4791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185873357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:44 Heat of formation + Delta-G solvation = 68.875372 kcal Electronic energy + Delta-G solvation = -29274.488605 eV Core-core repulsion = 25339.147377 eV Total energy + Delta-G solvation = -3935.341228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.01740 -40.86338 -38.26337 -36.03183 -35.16300 -34.33982 -32.74898 -31.81685 -30.56545 -29.97038 -29.84188 -26.68947 -25.93711 -25.19826 -24.31657 -22.88101 -22.41488 -21.86663 -20.67506 -20.50682 -19.06691 -18.07226 -17.36637 -16.79689 -16.66902 -16.07195 -15.60314 -15.27391 -14.99914 -14.84076 -14.56742 -14.49875 -14.20640 -13.91780 -13.66348 -13.46988 -13.30849 -13.13460 -12.97226 -12.66453 -12.60077 -12.35374 -12.27915 -11.99223 -11.88105 -11.70216 -11.64854 -11.32638 -11.20556 -11.19773 -11.17947 -10.86030 -10.76974 -10.40658 -10.11929 -10.06143 -9.89568 -9.70160 -9.14197 -8.85168 -8.79625 -6.88706 -5.70474 -3.00342 1.79329 2.12750 2.27256 2.71561 2.94892 3.48243 3.52557 3.53970 3.85990 4.00104 4.15046 4.18960 4.29843 4.34384 4.38736 4.58973 4.63943 4.68296 4.71929 4.82681 4.85839 4.92708 5.02066 5.09323 5.13294 5.15432 5.22330 5.31612 5.35830 5.39513 5.46481 5.49865 5.50184 5.54104 5.54983 5.62082 5.66640 5.77533 5.85379 5.89960 5.95107 6.20802 6.43419 6.68149 6.77952 6.82874 6.90834 7.73282 7.77922 8.46567 8.87572 9.58114 10.14184 10.50112 11.52145 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018345 B = 0.002280 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.917602 B =12276.468214 C =12936.890188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.110 4.110 4 H 0.094 0.906 5 C -0.136 4.136 6 C 0.520 3.480 7 O -0.528 6.528 8 N -0.611 5.611 9 C 0.098 3.902 10 C -0.129 4.129 11 C -0.132 4.132 12 C 0.138 3.862 13 H 0.113 0.887 14 N -0.295 5.295 15 C -0.043 4.043 16 C -0.004 4.004 17 C 0.233 3.767 18 N -0.726 5.726 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.285 1.285 27 N -0.253 5.253 28 N -0.094 5.094 29 C 0.103 3.897 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.186 0.814 45 H 0.039 0.961 46 H 0.037 0.963 47 H 0.386 0.614 48 H 0.256 0.744 49 H 0.081 0.919 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.499 -7.967 -1.175 32.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.131 4.131 4 H 0.112 0.888 5 C -0.194 4.194 6 C 0.308 3.692 7 O -0.403 6.403 8 N -0.346 5.346 9 C -0.025 4.025 10 C -0.168 4.168 11 C -0.170 4.170 12 C 0.035 3.965 13 H 0.131 0.869 14 N -0.089 5.089 15 C -0.194 4.194 16 C -0.142 4.142 17 C 0.104 3.896 18 N -0.371 5.371 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.741 3.259 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.212 1.212 27 N -0.120 5.120 28 N -0.072 5.072 29 C -0.021 4.021 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.204 0.796 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.100 0.900 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -30.781 -8.812 0.491 32.021 hybrid contribution 0.492 1.384 -1.136 1.857 sum -30.289 -7.429 -0.645 31.193 Atomic orbital electron populations 1.21808 0.94667 1.02157 1.02267 1.21509 0.96708 0.93937 1.03091 1.21415 0.91278 0.99046 1.01372 0.88766 1.21694 1.01038 1.00884 0.95748 1.20823 0.90805 0.75349 0.82246 1.90745 1.64912 1.48240 1.36374 1.48038 1.06269 1.73829 1.06467 1.21869 0.95979 0.98913 0.85693 1.21832 0.94966 0.98771 1.01251 1.21947 0.95216 1.04624 0.95234 1.21838 0.74707 1.01470 0.98504 0.86932 1.47240 1.08490 1.32820 1.20369 1.23298 0.93407 1.04595 0.98081 1.22474 0.94827 0.99266 0.97604 1.18939 0.88440 0.90565 0.91677 1.42303 1.36749 1.30402 1.27596 1.19182 1.06141 1.07635 1.04189 0.90946 1.24769 0.99881 0.98901 0.97404 1.69673 1.43325 1.25936 1.19064 0.86230 0.82581 0.78798 0.78325 1.21263 1.21753 1.21191 1.75112 1.12251 1.15769 1.08861 1.78310 0.93630 1.16737 1.18512 1.21881 0.80979 0.96630 1.02647 0.92088 0.92493 0.92269 0.91476 0.91015 0.92174 0.91496 0.91639 0.88700 0.90502 0.89089 0.90755 0.89851 0.89858 0.79649 0.94353 0.94536 0.78090 0.93453 0.90036 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.67 37.16 0.36 -0.18 16 2 C -0.11 -0.58 5.21 -26.73 -0.14 -0.72 16 3 C -0.11 -0.70 1.87 -91.77 -0.17 -0.87 16 4 H 0.09 0.39 6.36 -51.93 -0.33 0.06 16 5 C -0.14 -0.94 8.20 37.16 0.30 -0.64 16 6 C 0.52 5.27 6.82 -10.99 -0.07 5.19 16 7 O -0.53 -7.87 15.63 5.56 0.09 -7.79 16 8 N -0.61 -5.15 2.98 -173.03 -0.52 -5.67 16 9 C 0.10 0.44 6.08 -3.93 -0.02 0.41 16 10 C -0.13 -0.49 6.06 -26.84 -0.16 -0.65 16 11 C -0.13 -0.83 4.77 -26.69 -0.13 -0.96 16 12 C 0.14 1.38 3.28 -67.81 -0.22 1.16 16 13 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 14 N -0.29 -4.27 3.26 -54.65 -0.18 -4.45 16 15 C -0.04 -0.66 10.62 -17.05 -0.18 -0.84 16 16 C 0.00 -0.08 6.61 -82.78 -0.55 -0.62 16 17 C 0.23 4.98 6.82 -5.20 -0.04 4.94 16 18 N -0.73 -19.33 5.59 -61.09 -0.34 -19.67 16 19 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 20 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -29.18 13.06 55.49 0.72 -28.46 16 23 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 27 N -0.25 -5.33 12.41 33.29 0.41 -4.92 16 28 N -0.09 -1.73 13.17 60.35 0.79 -0.94 16 29 C 0.10 1.12 6.03 -3.71 -0.02 1.10 16 30 H 0.06 0.22 6.70 -51.92 -0.35 -0.13 16 31 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.29 7.79 -51.93 -0.40 -0.11 16 34 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 37 H 0.06 0.31 6.87 -51.93 -0.36 -0.05 16 38 H 0.09 0.24 5.19 -51.93 -0.27 -0.03 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.50 7.24 -51.93 -0.38 0.13 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.19 2.17 7.34 -52.49 -0.39 1.78 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.39 11.12 7.66 -40.82 -0.31 10.81 16 48 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.11 1.50 7.04 -51.93 -0.37 1.14 16 LS Contribution 398.61 15.07 6.01 6.01 Total: -1.00 -37.15 398.61 -7.51 -44.66 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -8.19 Total: 3.64 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.29 Total: -0.19 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: 0.90 Total: -64.10 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.09 Total: -7.79 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.15 -7.51 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185873357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.537 kcal (2) G-P(sol) polarization free energy of solvation -37.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds