Wall clock time and date at job start Tue Mar 31 2020 18:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47335 * 2 1 4 4 H 1.08997 * 109.46924 * 305.00309 * 3 2 1 5 5 C 1.53004 * 109.47141 * 64.99897 * 3 2 1 6 6 C 1.50697 * 109.47506 * 184.99821 * 3 2 1 7 7 O 1.21274 * 120.00269 * 263.41154 * 6 3 2 8 8 N 1.34776 * 119.99758 * 83.40683 * 6 3 2 9 9 C 1.46933 * 120.63074 * 4.77065 * 8 6 3 10 10 C 1.52757 * 109.00618 * 233.57906 * 9 8 6 11 11 C 1.53036 * 109.38752 * 305.58841 * 10 9 8 12 12 C 1.53037 * 109.53841 * 61.23885 * 11 10 9 13 13 H 1.09001 * 109.50085 * 58.58672 * 12 11 10 14 14 N 1.46500 * 109.49859 * 178.68654 * 12 11 10 15 15 C 1.35313 * 125.86829 * 34.83770 * 14 12 11 16 16 C 1.35350 * 106.17808 * 180.02562 * 15 14 12 17 17 C 1.50692 * 126.75682 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47183 * 94.99814 * 17 16 15 19 19 C 1.36935 * 120.00259 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99845 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00167 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99966 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99845 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47290 * 60.00535 * 23 21 19 25 25 H 1.48499 * 109.47181 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47296 * 299.99899 * 23 21 19 27 27 N 1.33777 * 106.49311 * 359.97438 * 16 15 14 28 28 N 1.28638 * 108.88747 * 359.73804 * 27 16 15 29 29 C 1.46924 * 120.63467 * 185.04522 * 8 6 3 30 30 H 1.09008 * 109.47095 * 299.99895 * 1 2 3 31 31 H 1.08994 * 109.47254 * 59.99997 * 1 2 3 32 32 H 1.08998 * 109.47237 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47108 * 239.99925 * 2 1 3 34 34 H 1.09008 * 109.47277 * 119.99810 * 2 1 3 35 35 H 1.09000 * 109.47089 * 173.91624 * 5 3 2 36 36 H 1.09005 * 109.46920 * 53.91922 * 5 3 2 37 37 H 1.09003 * 109.47263 * 293.92089 * 5 3 2 38 38 H 1.09005 * 109.58341 * 353.41418 * 9 8 6 39 39 H 1.08995 * 109.58496 * 113.83986 * 9 8 6 40 40 H 1.09004 * 109.56287 * 185.54983 * 10 9 8 41 41 H 1.09007 * 109.38690 * 65.51761 * 10 9 8 42 42 H 1.08999 * 109.45893 * 301.22000 * 11 10 9 43 43 H 1.08997 * 109.46082 * 181.26254 * 11 10 9 44 44 H 1.07996 * 126.91223 * 0.02562 * 15 14 12 45 45 H 1.08995 * 109.47898 * 215.00305 * 17 16 15 46 46 H 1.09004 * 109.47051 * 335.00617 * 17 16 15 47 47 H 0.97002 * 119.99895 * 0.02562 * 18 17 16 48 48 H 0.96998 * 120.00148 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.58962 * 246.16301 * 29 8 6 50 50 H 1.09003 * 109.58145 * 6.58068 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.2321 1.5352 0.8692 8 7 4.1180 1.3449 -1.3381 9 6 3.2983 1.3389 -2.5575 10 6 3.6522 0.1073 -3.3889 11 6 5.1608 0.0838 -3.6452 12 6 5.9054 -0.0018 -2.3110 13 1 5.5935 -0.8995 -1.7772 14 7 7.3482 -0.0558 -2.5588 15 6 8.0061 0.5818 -3.5546 16 6 9.3123 0.2570 -3.4121 17 6 10.4558 0.7175 -4.2788 18 7 11.0849 1.8936 -3.6730 19 6 12.1530 2.4914 -4.2869 20 1 12.5314 2.0960 -5.2181 21 6 12.7495 3.6055 -3.7125 22 7 12.2888 4.0870 -2.5776 23 14 14.2061 4.4213 -4.5505 24 1 13.8028 4.8870 -5.9017 25 1 14.6569 5.5816 -3.7407 26 1 15.3170 3.4437 -4.6748 27 7 9.3887 -0.5525 -2.3497 28 7 8.2088 -0.7134 -1.8632 29 6 5.5774 1.2343 -1.4676 30 1 -0.3634 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 2.0891 3.1165 1.3551 36 1 1.9782 1.5285 2.1517 37 1 0.5501 2.2220 1.3467 38 1 2.2426 1.3051 -2.2878 39 1 3.5006 2.2389 -3.1382 40 1 3.1220 0.1447 -4.3406 41 1 3.3614 -0.7918 -2.8455 42 1 5.4546 0.9944 -4.1673 43 1 5.4116 -0.7825 -4.2573 44 1 7.5755 1.2213 -4.3108 45 1 11.1905 -0.0829 -4.3667 46 1 10.0800 0.9760 -5.2689 47 1 10.7449 2.2489 -2.8369 48 1 12.7058 4.8653 -2.1760 49 1 5.9694 2.1255 -1.9576 50 1 6.0251 1.1316 -0.4791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185873357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:43 Heat of formation + Delta-G solvation = 42.427607 kcal Electronic energy + Delta-G solvation = -29275.635466 eV Core-core repulsion = 25339.147377 eV Total energy + Delta-G solvation = -3936.488089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.34500 -41.60092 -39.03461 -36.87265 -36.60327 -35.56711 -33.84135 -33.24473 -31.64878 -31.39723 -30.48589 -27.71026 -27.32937 -25.88649 -25.08433 -24.79516 -23.25212 -22.55680 -22.08108 -21.35412 -19.71868 -19.35136 -18.78125 -17.96021 -17.65455 -16.91573 -16.64039 -16.39911 -16.00356 -15.86957 -15.61131 -15.41173 -15.34761 -15.08196 -14.71229 -14.55433 -14.30822 -14.06538 -13.93779 -13.66655 -13.44184 -13.14281 -13.08341 -12.84019 -12.75506 -12.70503 -12.61708 -12.51415 -12.29978 -12.16765 -12.12147 -11.91135 -11.85055 -11.75894 -11.63740 -11.56599 -11.20498 -10.94893 -10.77521 -10.26457 -9.85507 -9.02894 -7.93288 -5.24267 0.54079 1.15956 1.42901 1.49223 1.50381 1.53809 1.59794 1.93035 2.59494 3.12111 3.29409 3.37721 3.44275 3.52602 3.67414 3.82097 3.86575 3.91132 3.95429 3.98260 4.12011 4.18606 4.23044 4.35173 4.42586 4.47992 4.50797 4.54515 4.58903 4.66075 4.71320 4.75268 4.85668 4.91026 4.95140 4.98338 5.03662 5.11343 5.15088 5.16488 5.19304 5.26387 5.29622 5.35692 5.50385 5.50454 5.64804 6.23737 6.25607 7.02862 7.32198 7.47992 8.03703 8.29618 9.30511 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018345 B = 0.002280 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.917602 B =12276.468214 C =12936.890188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.101 4.101 4 H 0.129 0.871 5 C -0.137 4.137 6 C 0.510 3.490 7 O -0.590 6.590 8 N -0.605 5.605 9 C 0.089 3.911 10 C -0.121 4.121 11 C -0.126 4.126 12 C 0.136 3.864 13 H 0.111 0.889 14 N -0.280 5.280 15 C -0.013 4.013 16 C -0.037 4.037 17 C 0.236 3.764 18 N -0.740 5.740 19 C -0.243 4.243 20 H 0.087 0.913 21 C -0.081 4.081 22 N -0.975 5.975 23 Si 0.981 3.019 24 H -0.269 1.269 25 H -0.299 1.299 26 H -0.279 1.279 27 N -0.298 5.298 28 N -0.119 5.119 29 C 0.107 3.893 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.126 0.874 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.229 0.771 45 H 0.029 0.971 46 H 0.067 0.933 47 H 0.369 0.631 48 H 0.250 0.750 49 H 0.078 0.922 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.693 -7.925 -4.661 35.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.122 4.122 4 H 0.147 0.853 5 C -0.194 4.194 6 C 0.300 3.700 7 O -0.470 6.470 8 N -0.338 5.338 9 C -0.031 4.031 10 C -0.159 4.159 11 C -0.165 4.165 12 C 0.034 3.966 13 H 0.129 0.871 14 N -0.074 5.074 15 C -0.165 4.165 16 C -0.176 4.176 17 C 0.108 3.892 18 N -0.383 5.383 19 C -0.375 4.375 20 H 0.105 0.895 21 C -0.272 4.272 22 N -0.626 5.626 23 Si 0.810 3.190 24 H -0.195 1.195 25 H -0.226 1.226 26 H -0.205 1.205 27 N -0.164 5.164 28 N -0.097 5.097 29 C -0.018 4.018 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.141 0.859 39 H 0.109 0.891 40 H 0.144 0.856 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.245 0.755 45 H 0.047 0.953 46 H 0.085 0.915 47 H 0.200 0.800 48 H 0.059 0.941 49 H 0.096 0.904 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -34.027 -8.831 -3.057 35.287 hybrid contribution 1.368 1.312 -0.041 1.896 sum -32.658 -7.519 -3.098 33.656 Atomic orbital electron populations 1.21795 0.92917 1.02706 1.03109 1.21502 0.98045 0.92680 1.02663 1.21488 0.88157 1.00361 1.02158 0.85336 1.21708 1.02593 0.99606 0.95504 1.21680 0.92381 0.74084 0.81817 1.90720 1.66485 1.51164 1.38590 1.48174 1.05274 1.72660 1.07672 1.22292 0.96711 1.00116 0.84025 1.21866 0.92906 0.98368 1.02779 1.22047 0.96511 1.05511 0.92428 1.22254 0.72416 1.00794 1.01143 0.87060 1.47611 1.09759 1.30956 1.19029 1.23749 0.91974 1.02933 0.97830 1.22355 0.96040 1.00994 0.98167 1.18987 0.88840 0.88387 0.92949 1.42531 1.36821 1.31780 1.27145 1.19683 1.06178 1.07254 1.04341 0.89549 1.25693 1.03154 1.00090 0.98300 1.69865 1.45117 1.26545 1.21035 0.85096 0.78997 0.77311 0.77639 1.19476 1.22569 1.20488 1.75036 1.13861 1.17432 1.10121 1.78213 0.93719 1.18350 1.19452 1.21598 0.82947 0.96935 1.00322 0.92325 0.90552 0.91935 0.90158 0.93358 0.93742 0.93793 0.88844 0.85934 0.89129 0.85629 0.90387 0.88731 0.89151 0.75468 0.95342 0.91508 0.80002 0.94137 0.90370 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.67 71.98 0.70 0.11 16 2 C -0.11 -0.90 5.21 30.59 0.16 -0.75 16 3 C -0.10 -1.10 1.87 -11.54 -0.02 -1.12 16 4 H 0.13 0.52 6.36 -2.39 -0.02 0.51 16 5 C -0.14 -1.84 8.20 71.98 0.59 -1.25 16 6 C 0.51 10.38 6.82 87.66 0.60 10.97 16 7 O -0.59 -19.09 15.63 -3.01 -0.05 -19.13 16 8 N -0.60 -9.44 2.98 -819.74 -2.44 -11.89 16 9 C 0.09 0.42 6.08 86.22 0.52 0.95 16 10 C -0.12 -0.32 6.06 30.53 0.19 -0.13 16 11 C -0.13 -1.12 4.77 30.62 0.15 -0.98 16 12 C 0.14 2.56 3.28 45.07 0.15 2.71 16 13 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 14 N -0.28 -7.97 3.26 -326.81 -1.06 -9.04 16 15 C -0.01 -0.38 10.62 83.49 0.89 0.51 16 16 C -0.04 -1.44 6.61 41.59 0.28 -1.16 16 17 C 0.24 10.03 6.82 85.63 0.58 10.62 16 18 N -0.74 -39.89 5.59 -347.18 -1.94 -41.83 16 19 C -0.24 -13.89 9.99 84.03 0.84 -13.05 16 20 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 21 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 22 N -0.97 -62.55 13.06 21.65 0.28 -62.27 16 23 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 N -0.30 -13.02 12.41 -48.60 -0.60 -13.62 16 28 N -0.12 -4.56 13.17 37.02 0.49 -4.08 16 29 C 0.11 2.37 6.03 86.36 0.52 2.89 16 30 H 0.06 0.27 6.70 -2.38 -0.02 0.26 16 31 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.08 0.45 7.79 -2.39 -0.02 0.43 16 34 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.04 0.78 8.07 -2.38 -0.02 0.76 16 37 H 0.09 0.70 6.87 -2.39 -0.02 0.69 16 38 H 0.12 -0.05 5.19 -2.38 -0.01 -0.06 16 39 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.13 -0.35 8.14 -2.38 -0.02 -0.37 16 41 H 0.08 0.22 8.14 -2.38 -0.02 0.20 16 42 H 0.09 0.69 7.24 -2.39 -0.02 0.67 16 43 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.23 4.43 7.34 -2.91 -0.02 4.41 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 46 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 47 H 0.37 21.97 7.66 -92.71 -0.71 21.26 16 48 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 49 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.06 1.92 7.04 -2.39 -0.02 1.90 16 Total: -1.00 -87.61 398.61 3.53 -84.08 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.23 Total: 22.66 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 6.60 Total: 6.01 kcal Atomic # 7 Polarization: -137.44 SS G_CDS: -5.28 Total: -142.72 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.05 Total: -19.13 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -87.61 3.53 -84.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185873357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.509 kcal (2) G-P(sol) polarization free energy of solvation -87.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds