Wall clock time and date at job start Tue Mar 31 2020 18:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46929 * 2 1 4 4 H 1.09002 * 109.47380 * 60.66274 * 3 2 1 5 5 C 1.50696 * 109.47010 * 180.66507 * 3 2 1 6 6 H 1.08004 * 120.00014 * 112.26014 * 5 3 2 7 7 C 1.37879 * 119.99805 * 292.52780 * 5 3 2 8 8 N 1.31513 * 119.99489 * 176.78846 * 7 5 3 9 9 Si 1.86795 * 120.00044 * 356.79400 * 7 5 3 10 10 H 1.48500 * 109.47422 * 89.99722 * 9 7 5 11 11 H 1.48502 * 109.46837 * 209.99308 * 9 7 5 12 12 H 1.48499 * 109.47317 * 329.99498 * 9 7 5 13 13 N 1.46906 * 109.47047 * 300.66702 * 3 2 1 14 14 C 1.46960 * 111.00171 * 78.68873 * 13 3 2 15 15 C 1.53469 * 109.74424 * 53.40000 * 14 13 3 16 16 N 1.46307 * 108.17616 * 49.58706 * 15 14 13 17 17 C 1.34417 * 129.75643 * 163.67528 * 16 15 14 18 18 C 1.50700 * 126.48168 * 0.20278 * 17 16 15 19 19 N 1.46904 * 109.46654 * 93.50757 * 18 17 16 20 20 C 1.47011 * 110.99919 * 287.64494 * 19 18 17 21 21 C 1.53095 * 109.25627 * 177.61336 * 20 19 18 22 22 O 1.43014 * 109.26469 * 56.84572 * 21 20 19 23 23 C 1.43009 * 113.73848 * 301.33358 * 22 21 20 24 24 C 1.47020 * 110.99671 * 164.01074 * 19 18 17 25 25 N 1.30920 * 107.03220 * 180.20851 * 17 16 15 26 26 N 1.28985 * 109.75668 * 359.93853 * 25 17 16 27 27 C 1.29631 * 109.47252 * 359.95510 * 26 25 17 28 28 C 1.47390 * 110.99777 * 202.96831 * 13 3 2 29 29 H 1.09000 * 109.46779 * 198.73861 * 1 2 3 30 30 H 1.09000 * 109.47345 * 318.73388 * 1 2 3 31 31 H 1.08999 * 109.47289 * 78.73607 * 1 2 3 32 32 H 1.08992 * 109.46993 * 240.00331 * 2 1 3 33 33 H 1.08991 * 109.47059 * 119.99936 * 2 1 3 34 34 H 0.97008 * 120.00075 * 185.01994 * 8 7 5 35 35 H 1.09006 * 109.42752 * 173.47857 * 14 13 3 36 36 H 1.08998 * 109.43145 * 293.37212 * 14 13 3 37 37 H 1.08993 * 109.72287 * 169.25945 * 15 14 13 38 38 H 1.08999 * 109.71503 * 289.91697 * 15 14 13 39 39 H 1.09001 * 109.46907 * 213.50094 * 18 17 16 40 40 H 1.08992 * 109.47575 * 333.50682 * 18 17 16 41 41 H 1.09006 * 109.50356 * 297.54368 * 20 19 18 42 42 H 1.08997 * 109.51079 * 57.67171 * 20 19 18 43 43 H 1.08999 * 109.50585 * 296.91122 * 21 20 19 44 44 H 1.09002 * 109.54270 * 176.80765 * 21 20 19 45 45 H 1.09007 * 109.50581 * 298.73210 * 23 22 21 46 46 H 1.09001 * 109.54692 * 178.62309 * 23 22 21 47 47 H 1.08999 * 109.50513 * 302.32562 * 24 19 18 48 48 H 1.09001 * 109.50538 * 62.45635 * 24 19 18 49 49 H 1.09003 * 109.75162 * 45.56881 * 28 13 3 50 50 H 1.08998 * 109.75264 * 166.30535 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6864 1.9530 0.8959 5 6 3.5469 1.4426 -0.0165 6 1 4.0774 1.8003 -0.8866 7 6 4.2482 0.9809 1.0771 8 7 5.5615 0.9218 1.0388 9 14 3.3332 0.4392 2.6128 10 1 3.0173 -1.0086 2.5162 11 1 4.1826 0.6818 3.8065 12 1 2.0723 1.2137 2.7368 13 7 1.5372 2.1397 -1.1913 14 6 0.1382 2.5514 -1.0094 15 6 0.0008 3.3630 0.2858 16 7 1.0347 4.3982 0.2875 17 6 1.1363 5.5104 1.0354 18 6 0.1686 5.9685 2.0960 19 7 0.6128 5.4797 3.4082 20 6 0.3985 4.0304 3.5306 21 6 0.9284 3.5544 4.8858 22 8 0.2814 4.2875 5.9294 23 6 0.4699 5.7024 5.8413 24 6 -0.0648 6.2003 4.4958 25 7 2.2349 6.1205 0.6682 26 7 2.8175 5.4458 -0.2640 27 6 2.1218 4.3845 -0.5286 28 6 2.3930 3.2908 -1.5303 29 1 -0.3633 -0.9732 0.3301 30 1 -0.3634 0.7724 0.6778 31 1 -0.3634 0.2007 -1.0078 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 6.0512 0.5296 1.7787 35 1 -0.1724 3.1641 -1.8558 36 1 -0.4955 1.6664 -0.9506 37 1 -0.9845 3.8272 0.3262 38 1 0.1350 2.7076 1.1464 39 1 0.1312 7.0578 2.1077 40 1 -0.8235 5.5733 1.8779 41 1 -0.6673 3.8129 3.4598 42 1 0.9297 3.5150 2.7306 43 1 2.0041 3.7231 4.9355 44 1 0.7209 2.4910 5.0053 45 1 1.5323 5.9336 5.9188 46 1 -0.0695 6.1933 6.6514 47 1 0.1284 7.2688 4.4002 48 1 -1.1379 6.0174 4.4404 49 1 3.4417 2.9974 -1.4805 50 1 2.1558 3.6433 -2.5340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:15 Heat of formation + Delta-G solvation = 87.761754 kcal Electronic energy + Delta-G solvation = -32321.839499 eV Core-core repulsion = 28387.317246 eV Total energy + Delta-G solvation = -3934.522253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.93384 -39.64603 -38.72720 -36.16646 -34.52555 -32.98289 -32.34817 -31.34036 -30.73355 -30.14081 -28.38899 -27.26640 -25.31699 -24.44486 -24.24111 -23.44504 -22.29764 -20.98489 -20.88895 -20.36230 -18.62271 -17.34932 -17.06517 -16.57226 -16.26615 -15.93255 -15.63983 -15.41760 -15.14141 -14.94455 -14.70761 -14.34430 -14.14773 -13.84060 -13.76381 -13.37841 -13.17130 -12.84183 -12.62926 -12.45099 -12.37239 -12.17321 -11.96002 -11.84982 -11.59607 -11.40924 -11.22881 -11.01383 -10.84390 -10.77577 -10.62353 -10.31754 -9.95195 -9.93244 -9.83937 -9.75553 -9.63355 -9.07203 -8.71741 -8.66217 -8.44663 -7.89808 -6.19425 -4.22062 2.15641 2.78860 3.11663 3.15253 3.24867 3.27511 3.67773 3.78431 4.24090 4.30848 4.33563 4.64732 4.66972 4.72262 4.82593 4.85959 4.88604 4.96362 5.01227 5.05215 5.10711 5.16100 5.30324 5.37437 5.44446 5.51407 5.60504 5.64138 5.68324 5.74094 5.76780 5.81464 5.85254 5.86970 5.98784 6.23574 6.35252 6.37262 6.49024 6.59235 6.64216 6.65866 6.71868 6.76797 6.98049 7.07433 7.27683 7.28627 7.57562 7.73411 8.40093 8.80756 9.25060 9.38584 10.91348 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.005905 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.642113 B = 4740.366747 C = 5680.272778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.117 4.117 3 C 0.177 3.823 4 H 0.008 0.992 5 C -0.523 4.523 6 H 0.092 0.908 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.873 3.127 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.270 1.270 13 N -0.512 5.512 14 C 0.015 3.985 15 C 0.063 3.937 16 N -0.467 5.467 17 C 0.166 3.834 18 C 0.153 3.847 19 N -0.528 5.528 20 C 0.015 3.985 21 C 0.064 3.936 22 O -0.386 6.386 23 C 0.063 3.937 24 C 0.021 3.979 25 N -0.283 5.283 26 N -0.293 5.293 27 C 0.186 3.814 28 C 0.131 3.869 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.266 0.734 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.099 0.901 45 H 0.062 0.938 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.043 0.957 49 H 0.144 0.856 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.635 5.313 3.267 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.155 4.155 3 C 0.070 3.930 4 H 0.025 0.975 5 C -0.561 4.561 6 H 0.109 0.891 7 C -0.123 4.123 8 N -0.523 5.523 9 Si 0.702 3.298 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.196 1.196 13 N -0.233 5.233 14 C -0.114 4.114 15 C -0.062 4.062 16 N -0.159 5.159 17 C -0.101 4.101 18 C 0.023 3.977 19 N -0.254 5.254 20 C -0.113 4.113 21 C -0.013 4.013 22 O -0.304 6.304 23 C -0.015 4.015 24 C -0.107 4.107 25 N -0.124 5.124 26 N -0.132 5.132 27 C -0.084 4.084 28 C 0.001 3.999 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.138 0.862 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.117 0.883 47 H 0.109 0.891 48 H 0.062 0.938 49 H 0.161 0.839 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.948 6.011 3.143 16.415 hybrid contribution -2.146 -0.862 1.505 2.759 sum -17.094 5.150 4.648 18.448 Atomic orbital electron populations 1.22252 0.98705 1.00069 1.00619 1.21841 0.92632 0.99212 1.01794 1.19928 0.96472 0.90164 0.86400 0.97463 1.21049 0.87823 1.44350 1.02858 0.89095 1.24862 0.94613 0.95009 0.97779 1.69840 1.05977 1.43809 1.32717 0.87024 0.79828 0.79110 0.83842 1.20109 1.21706 1.19566 1.62334 0.99468 1.22310 1.39166 1.23299 0.94315 1.00049 0.93761 1.22807 0.89988 0.89570 1.03882 1.45876 1.20869 1.19235 1.29912 1.23998 0.99559 0.87874 0.98714 1.20174 0.91800 1.01183 0.84561 1.62035 1.57997 1.03866 1.01491 1.22939 0.99675 0.88700 0.99989 1.22653 0.97397 0.96083 0.85145 1.87964 1.74932 1.18051 1.49456 1.22670 1.01311 0.81583 0.95892 1.22805 0.96584 0.99508 0.91773 1.74434 1.03874 1.24772 1.09367 1.73985 1.23226 1.04438 1.11523 1.25862 0.85555 0.99331 0.97641 1.21376 1.03479 0.82724 0.92357 0.93942 0.93990 0.91775 0.90999 0.93057 0.92358 0.90592 0.86170 0.89647 0.89122 0.87468 0.93203 0.93876 0.89513 0.91826 0.88323 0.91960 0.88307 0.89075 0.93841 0.83854 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.16 37.16 0.30 -1.97 16 2 C -0.12 -2.21 5.28 -26.73 -0.14 -2.35 16 3 C 0.18 3.66 0.90 -68.86 -0.06 3.60 16 4 H 0.01 0.17 3.83 -51.93 -0.20 -0.03 16 5 C -0.52 -13.43 8.14 -34.44 -0.28 -13.71 16 6 H 0.09 2.52 5.72 -52.48 -0.30 2.22 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.13 16 8 N -0.89 -26.19 13.95 55.43 0.77 -25.42 16 9 Si 0.87 20.73 24.96 -169.99 -4.24 16.49 16 10 H -0.27 -6.31 6.85 56.52 0.39 -5.93 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.00 6.31 56.52 0.36 -5.64 16 13 N -0.51 -9.02 4.79 -228.65 -1.09 -10.12 16 14 C 0.01 0.20 5.20 -3.55 -0.02 0.18 16 15 C 0.06 0.87 5.23 -3.90 -0.02 0.85 16 16 N -0.47 -8.10 2.73 -110.80 -0.30 -8.40 16 17 C 0.17 2.92 6.86 -155.63 -1.07 1.85 16 18 C 0.15 2.01 5.43 -4.97 -0.03 1.98 16 19 N -0.53 -7.32 4.67 -235.75 -1.10 -8.42 16 20 C 0.01 0.22 5.26 -3.71 -0.02 0.20 16 21 C 0.06 0.94 7.01 37.21 0.26 1.20 16 22 O -0.39 -5.29 10.83 -35.23 -0.38 -5.67 16 23 C 0.06 0.68 7.01 37.21 0.26 0.94 16 24 C 0.02 0.22 5.62 -3.71 -0.02 0.20 16 25 N -0.28 -6.01 12.24 32.66 0.40 -5.61 16 26 N -0.29 -6.58 12.20 32.76 0.40 -6.18 16 27 C 0.19 3.72 7.42 -155.28 -1.15 2.57 16 28 C 0.13 2.44 5.81 -4.67 -0.03 2.42 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.56 5.87 -51.93 -0.31 0.26 16 31 H 0.06 0.81 6.21 -51.93 -0.32 0.49 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.05 1.06 4.51 -51.93 -0.23 0.82 16 34 H 0.27 7.47 8.32 -40.82 -0.34 7.13 16 35 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.12 1.42 3.75 -51.93 -0.19 1.23 16 37 H 0.09 0.91 7.93 -51.93 -0.41 0.50 16 38 H 0.09 1.37 4.07 -51.93 -0.21 1.16 16 39 H 0.11 1.24 7.92 -51.93 -0.41 0.83 16 40 H 0.05 0.55 7.71 -51.93 -0.40 0.15 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 1.52 5.34 -51.93 -0.28 1.24 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.09 0.80 8.04 -51.93 -0.42 0.39 16 48 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.14 3.12 4.95 -51.93 -0.26 2.87 16 50 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -32.34 360.92 -9.58 -41.92 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.36 Total: 5.87 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.11 Total: 0.09 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.93 Total: -64.14 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.38 Total: -5.67 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.24 Total: 16.49 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.34 -9.58 -41.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.683 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds