Wall clock time and date at job start Tue Mar 31 2020 18:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46929 * 2 1 4 4 H 1.09002 * 109.47380 * 60.66274 * 3 2 1 5 5 C 1.50696 * 109.47010 * 180.66507 * 3 2 1 6 6 H 1.08004 * 120.00014 * 112.26014 * 5 3 2 7 7 C 1.37879 * 119.99805 * 292.52780 * 5 3 2 8 8 N 1.31513 * 119.99489 * 176.78846 * 7 5 3 9 9 Si 1.86795 * 120.00044 * 356.79400 * 7 5 3 10 10 H 1.48500 * 109.47422 * 89.99722 * 9 7 5 11 11 H 1.48502 * 109.46837 * 209.99308 * 9 7 5 12 12 H 1.48499 * 109.47317 * 329.99498 * 9 7 5 13 13 N 1.46906 * 109.47047 * 300.66702 * 3 2 1 14 14 C 1.46960 * 111.00171 * 78.68873 * 13 3 2 15 15 C 1.53469 * 109.74424 * 53.40000 * 14 13 3 16 16 N 1.46307 * 108.17616 * 49.58706 * 15 14 13 17 17 C 1.34417 * 129.75643 * 163.67528 * 16 15 14 18 18 C 1.50700 * 126.48168 * 0.20278 * 17 16 15 19 19 N 1.46904 * 109.46654 * 93.50757 * 18 17 16 20 20 C 1.47011 * 110.99919 * 287.64494 * 19 18 17 21 21 C 1.53095 * 109.25627 * 177.61336 * 20 19 18 22 22 O 1.43014 * 109.26469 * 56.84572 * 21 20 19 23 23 C 1.43009 * 113.73848 * 301.33358 * 22 21 20 24 24 C 1.47020 * 110.99671 * 164.01074 * 19 18 17 25 25 N 1.30920 * 107.03220 * 180.20851 * 17 16 15 26 26 N 1.28985 * 109.75668 * 359.93853 * 25 17 16 27 27 C 1.29631 * 109.47252 * 359.95510 * 26 25 17 28 28 C 1.47390 * 110.99777 * 202.96831 * 13 3 2 29 29 H 1.09000 * 109.46779 * 198.73861 * 1 2 3 30 30 H 1.09000 * 109.47345 * 318.73388 * 1 2 3 31 31 H 1.08999 * 109.47289 * 78.73607 * 1 2 3 32 32 H 1.08992 * 109.46993 * 240.00331 * 2 1 3 33 33 H 1.08991 * 109.47059 * 119.99936 * 2 1 3 34 34 H 0.97008 * 120.00075 * 185.01994 * 8 7 5 35 35 H 1.09006 * 109.42752 * 173.47857 * 14 13 3 36 36 H 1.08998 * 109.43145 * 293.37212 * 14 13 3 37 37 H 1.08993 * 109.72287 * 169.25945 * 15 14 13 38 38 H 1.08999 * 109.71503 * 289.91697 * 15 14 13 39 39 H 1.09001 * 109.46907 * 213.50094 * 18 17 16 40 40 H 1.08992 * 109.47575 * 333.50682 * 18 17 16 41 41 H 1.09006 * 109.50356 * 297.54368 * 20 19 18 42 42 H 1.08997 * 109.51079 * 57.67171 * 20 19 18 43 43 H 1.08999 * 109.50585 * 296.91122 * 21 20 19 44 44 H 1.09002 * 109.54270 * 176.80765 * 21 20 19 45 45 H 1.09007 * 109.50581 * 298.73210 * 23 22 21 46 46 H 1.09001 * 109.54692 * 178.62309 * 23 22 21 47 47 H 1.08999 * 109.50513 * 302.32562 * 24 19 18 48 48 H 1.09001 * 109.50538 * 62.45635 * 24 19 18 49 49 H 1.09003 * 109.75162 * 45.56881 * 28 13 3 50 50 H 1.08998 * 109.75264 * 166.30535 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6864 1.9530 0.8959 5 6 3.5469 1.4426 -0.0165 6 1 4.0774 1.8003 -0.8866 7 6 4.2482 0.9809 1.0771 8 7 5.5615 0.9218 1.0388 9 14 3.3332 0.4392 2.6128 10 1 3.0173 -1.0086 2.5162 11 1 4.1826 0.6818 3.8065 12 1 2.0723 1.2137 2.7368 13 7 1.5372 2.1397 -1.1913 14 6 0.1382 2.5514 -1.0094 15 6 0.0008 3.3630 0.2858 16 7 1.0347 4.3982 0.2875 17 6 1.1363 5.5104 1.0354 18 6 0.1686 5.9685 2.0960 19 7 0.6128 5.4797 3.4082 20 6 0.3985 4.0304 3.5306 21 6 0.9284 3.5544 4.8858 22 8 0.2814 4.2875 5.9294 23 6 0.4699 5.7024 5.8413 24 6 -0.0648 6.2003 4.4958 25 7 2.2349 6.1205 0.6682 26 7 2.8175 5.4458 -0.2640 27 6 2.1218 4.3845 -0.5286 28 6 2.3930 3.2908 -1.5303 29 1 -0.3633 -0.9732 0.3301 30 1 -0.3634 0.7724 0.6778 31 1 -0.3634 0.2007 -1.0078 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 6.0512 0.5296 1.7787 35 1 -0.1724 3.1641 -1.8558 36 1 -0.4955 1.6664 -0.9506 37 1 -0.9845 3.8272 0.3262 38 1 0.1350 2.7076 1.1464 39 1 0.1312 7.0578 2.1077 40 1 -0.8235 5.5733 1.8779 41 1 -0.6673 3.8129 3.4598 42 1 0.9297 3.5150 2.7306 43 1 2.0041 3.7231 4.9355 44 1 0.7209 2.4910 5.0053 45 1 1.5323 5.9336 5.9188 46 1 -0.0695 6.1933 6.6514 47 1 0.1284 7.2688 4.4002 48 1 -1.1379 6.0174 4.4404 49 1 3.4417 2.9974 -1.4805 50 1 2.1558 3.6433 -2.5340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:14 Heat of formation + Delta-G solvation = 61.749971 kcal Electronic energy + Delta-G solvation = -32322.967455 eV Core-core repulsion = 28387.317246 eV Total energy + Delta-G solvation = -3935.650209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.34714 -40.62992 -40.15091 -37.21411 -35.99835 -34.52930 -34.08648 -32.29445 -32.00823 -31.52832 -29.71492 -28.68624 -26.66534 -25.68243 -25.26315 -24.94028 -23.68459 -22.36978 -22.17014 -21.44697 -20.17631 -19.06037 -18.22286 -17.84252 -17.30831 -17.22916 -17.11584 -16.43046 -16.36860 -16.15159 -16.04592 -15.66978 -15.60508 -15.31093 -14.96176 -14.57794 -14.44148 -14.17105 -13.99363 -13.74256 -13.69307 -13.43447 -13.25606 -13.12334 -12.76784 -12.64549 -12.54623 -12.38910 -12.38156 -12.25421 -11.84261 -11.72657 -11.65165 -11.36215 -11.18674 -11.04593 -10.91639 -10.84915 -10.67647 -10.01552 -9.55138 -9.34294 -8.30991 -6.34920 0.80611 1.18341 1.22130 1.31451 1.52393 1.83147 2.23822 2.65207 2.80479 2.97623 3.02991 3.15677 3.43283 3.55011 3.70333 3.75805 3.80744 3.88724 3.95296 4.06012 4.06576 4.22444 4.27173 4.34673 4.37607 4.44337 4.48100 4.51585 4.55769 4.59191 4.61375 4.63686 4.77423 4.77871 4.82954 4.88953 4.91979 4.99580 5.16040 5.22609 5.23813 5.27301 5.48921 5.66834 5.74007 5.78239 5.86872 5.99778 6.01096 6.05858 6.54493 6.72920 7.29007 7.77966 8.83496 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.005905 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.642113 B = 4740.366747 C = 5680.272778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.186 3.814 4 H 0.003 0.997 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.945 5.945 9 Si 0.927 3.073 10 H -0.258 1.258 11 H -0.307 1.307 12 H -0.244 1.244 13 N -0.512 5.512 14 C 0.013 3.987 15 C 0.056 3.944 16 N -0.463 5.463 17 C 0.182 3.818 18 C 0.155 3.845 19 N -0.555 5.555 20 C 0.022 3.978 21 C 0.063 3.937 22 O -0.393 6.393 23 C 0.055 3.945 24 C 0.026 3.974 25 N -0.331 5.331 26 N -0.340 5.340 27 C 0.172 3.828 28 C 0.136 3.864 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.099 0.901 36 H 0.149 0.851 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.034 0.966 44 H 0.105 0.895 45 H 0.046 0.954 46 H 0.131 0.869 47 H 0.110 0.890 48 H 0.065 0.935 49 H 0.100 0.900 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.285 5.529 4.065 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.079 3.921 4 H 0.020 0.980 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.585 5.585 9 Si 0.753 3.247 10 H -0.183 1.183 11 H -0.235 1.235 12 H -0.168 1.168 13 N -0.233 5.233 14 C -0.114 4.114 15 C -0.067 4.067 16 N -0.154 5.154 17 C -0.087 4.087 18 C 0.026 3.974 19 N -0.281 5.281 20 C -0.106 4.106 21 C -0.014 4.014 22 O -0.311 6.311 23 C -0.021 4.021 24 C -0.101 4.101 25 N -0.171 5.171 26 N -0.179 5.179 27 C -0.099 4.099 28 C 0.005 3.995 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.117 0.883 36 H 0.166 0.834 37 H 0.151 0.849 38 H 0.102 0.898 39 H 0.142 0.858 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.123 0.877 45 H 0.065 0.935 46 H 0.149 0.851 47 H 0.128 0.872 48 H 0.083 0.917 49 H 0.118 0.882 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.654 6.229 3.929 21.928 hybrid contribution -0.369 -0.836 1.206 1.513 sum -21.023 5.393 5.136 22.303 Atomic orbital electron populations 1.22183 0.94271 1.01887 1.02554 1.21716 0.96611 0.96822 1.00392 1.19703 0.92904 0.92003 0.87520 0.97958 1.21483 0.91123 1.41452 1.01040 0.92725 1.25686 0.95182 0.95988 1.01182 1.70019 1.08005 1.46714 1.33806 0.86134 0.79344 0.79922 0.79261 1.18328 1.23533 1.16760 1.62296 1.01568 1.21890 1.37548 1.23539 0.91483 1.01680 0.94743 1.23144 0.91063 0.89065 1.03446 1.46059 1.20758 1.19706 1.28905 1.24860 0.98731 0.86944 0.98179 1.20415 0.91766 1.02298 0.82971 1.61922 1.59770 1.03842 1.02617 1.22795 1.00547 0.88996 0.98262 1.22582 0.95879 0.96854 0.86065 1.87954 1.74546 1.19498 1.49140 1.22932 1.01132 0.80402 0.97666 1.22874 0.97306 1.00022 0.89884 1.74319 1.05975 1.26397 1.10394 1.73865 1.24989 1.06068 1.13005 1.25934 0.86493 0.99040 0.98478 1.21207 1.01486 0.83050 0.93721 0.92083 0.92496 0.89559 0.92190 0.94856 0.92879 0.88301 0.83415 0.84900 0.89788 0.85756 0.89700 0.91249 0.92735 0.94743 0.87671 0.93508 0.85105 0.87226 0.91732 0.88213 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.16 71.98 0.59 -3.01 16 2 C -0.12 -4.20 5.28 30.60 0.16 -4.04 16 3 C 0.19 7.56 0.90 44.17 0.04 7.60 16 4 H 0.00 0.13 3.83 -2.39 -0.01 0.12 16 5 C -0.51 -27.57 8.14 25.60 0.21 -27.36 16 6 H 0.05 3.29 5.72 -2.91 -0.02 3.27 16 7 C 0.02 0.99 5.45 84.66 0.46 1.46 16 8 N -0.94 -59.60 13.95 21.45 0.30 -59.30 16 9 Si 0.93 43.79 24.96 68.60 1.71 45.50 16 10 H -0.26 -11.39 6.85 99.48 0.68 -10.71 16 11 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 12 H -0.24 -10.29 6.31 99.48 0.63 -9.67 16 13 N -0.51 -17.26 4.79 -877.31 -4.20 -21.46 16 14 C 0.01 0.30 5.20 86.45 0.45 0.75 16 15 C 0.06 1.30 5.23 86.57 0.45 1.75 16 16 N -0.46 -15.10 2.73 -504.45 -1.38 -16.48 16 17 C 0.18 6.09 6.86 138.20 0.95 7.03 16 18 C 0.15 3.48 5.43 85.56 0.46 3.95 16 19 N -0.55 -13.72 4.67 -899.76 -4.20 -17.92 16 20 C 0.02 0.58 5.26 86.31 0.45 1.03 16 21 C 0.06 1.76 7.01 72.01 0.50 2.27 16 22 O -0.39 -9.82 10.83 -148.98 -1.61 -11.44 16 23 C 0.06 1.05 7.01 72.02 0.50 1.56 16 24 C 0.03 0.44 5.62 86.31 0.49 0.93 16 25 N -0.33 -14.17 12.24 -50.58 -0.62 -14.79 16 26 N -0.34 -15.86 12.20 -50.27 -0.61 -16.48 16 27 C 0.17 6.93 7.42 138.11 1.02 7.96 16 28 C 0.14 5.16 5.81 85.49 0.50 5.66 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.20 5.87 -2.39 -0.01 1.18 16 31 H 0.09 1.68 6.21 -2.39 -0.01 1.66 16 32 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.03 1.31 4.51 -2.39 -0.01 1.30 16 34 H 0.26 15.75 8.32 -92.70 -0.77 14.98 16 35 H 0.10 1.90 8.08 -2.38 -0.02 1.88 16 36 H 0.15 2.59 3.75 -2.39 -0.01 2.59 16 37 H 0.13 1.89 7.93 -2.39 -0.02 1.87 16 38 H 0.08 2.15 4.07 -2.39 -0.01 2.14 16 39 H 0.12 2.38 7.92 -2.39 -0.02 2.36 16 40 H 0.09 1.34 7.71 -2.39 -0.02 1.32 16 41 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.05 1.78 5.34 -2.39 -0.01 1.77 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.11 1.47 8.04 -2.39 -0.02 1.45 16 48 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.10 4.71 4.95 -2.39 -0.01 4.69 16 50 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 Total: -1.00 -78.89 360.92 -2.51 -81.40 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.87 Total: 23.43 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 7.24 Total: 7.53 kcal Atomic # 7 Polarization: -135.71 SS G_CDS: -10.71 Total: -146.42 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -1.61 Total: -11.44 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.71 Total: 45.50 kcal Total: -78.89 -2.51 -81.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.150 kcal (2) G-P(sol) polarization free energy of solvation -78.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds