Wall clock time and date at job start Tue Mar 31 2020 18:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46906 * 2 1 4 4 H 1.09001 * 109.47384 * 303.23174 * 3 2 1 5 5 C 1.50703 * 109.47065 * 183.23404 * 3 2 1 6 6 H 1.07997 * 120.00100 * 240.00022 * 5 3 2 7 7 C 1.37880 * 120.00122 * 59.99593 * 5 3 2 8 8 N 1.31512 * 119.99698 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00066 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46955 * 90.00471 * 9 7 5 11 11 H 1.48500 * 109.46849 * 210.00373 * 9 7 5 12 12 H 1.48497 * 109.47120 * 330.00029 * 9 7 5 13 13 N 1.46903 * 109.47360 * 63.23298 * 3 2 1 14 14 C 1.46430 * 110.99825 * 280.51841 * 13 3 2 15 15 C 1.52625 * 110.96956 * 269.50902 * 14 13 3 16 16 C 1.53193 * 109.67532 * 61.84343 * 15 14 13 17 17 N 1.46345 * 108.93577 * 272.33008 * 16 15 14 18 18 C 1.35002 * 127.63959 * 206.46483 * 17 16 15 19 19 C 1.50703 * 126.45664 * 2.29152 * 18 17 16 20 20 N 1.46499 * 109.46634 * 269.71134 * 19 18 17 21 21 C 1.46498 * 119.99900 * 269.99831 * 20 19 18 22 22 C 1.34777 * 120.00270 * 90.00079 * 20 19 18 23 23 C 1.50702 * 120.00031 * 176.13755 * 22 20 19 24 24 O 1.21278 * 119.99648 * 356.13560 * 22 20 19 25 25 N 1.30725 * 107.08762 * 182.02166 * 18 17 16 26 26 N 1.28773 * 109.70740 * 359.84071 * 25 18 17 27 27 C 1.30231 * 109.55400 * 359.79292 * 26 25 18 28 28 C 1.47102 * 110.99609 * 156.11995 * 13 3 2 29 29 H 1.09004 * 109.47020 * 165.60411 * 1 2 3 30 30 H 1.08996 * 109.46998 * 285.60769 * 1 2 3 31 31 H 1.09000 * 109.47115 * 45.61141 * 1 2 3 32 32 H 1.08999 * 109.47468 * 239.99515 * 2 1 3 33 33 H 1.09000 * 109.46928 * 119.99370 * 2 1 3 34 34 H 0.97006 * 119.99755 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.18380 * 29.89045 * 14 13 3 36 36 H 1.09001 * 109.17717 * 149.12891 * 14 13 3 37 37 H 1.09002 * 109.44015 * 181.90663 * 15 14 13 38 38 H 1.09000 * 109.43549 * 301.78080 * 15 14 13 39 39 H 1.09004 * 109.53774 * 32.41191 * 16 15 14 40 40 H 1.08999 * 109.54212 * 152.67208 * 16 15 14 41 41 H 1.08996 * 109.47167 * 149.71420 * 19 18 17 42 42 H 1.08991 * 109.46807 * 29.70654 * 19 18 17 43 43 H 1.09003 * 109.47643 * 93.06752 * 21 20 19 44 44 H 1.09008 * 109.47366 * 213.07117 * 21 20 19 45 45 H 1.09001 * 109.47360 * 333.06740 * 21 20 19 46 46 H 1.09004 * 109.46991 * 91.91596 * 23 22 20 47 47 H 1.08997 * 109.46892 * 211.91266 * 23 22 20 48 48 H 1.09002 * 109.47162 * 331.91501 * 23 22 20 49 49 H 1.08995 * 109.52619 * 275.56393 * 28 13 3 50 50 H 1.09008 * 109.52259 * 155.36800 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6301 1.9729 -0.8596 5 6 3.5448 1.4433 -0.0802 6 1 4.1274 1.8959 0.7086 7 6 4.1780 0.8661 -1.1604 8 7 3.4686 0.3154 -2.1211 9 14 6.0434 0.8665 -1.2594 10 1 6.5738 -0.3590 -0.6098 11 1 6.4635 0.8932 -2.6835 12 1 6.5758 2.0656 -0.5638 13 7 1.6151 2.1122 1.2366 14 6 0.2181 2.5420 1.1472 15 6 0.1174 3.9597 0.5910 16 6 0.6931 3.9991 -0.8281 17 7 2.1332 4.2473 -0.7497 18 6 2.9217 4.8267 -1.6798 19 6 2.4768 5.3959 -3.0023 20 7 2.5392 4.3525 -4.0287 21 6 3.7676 4.1595 -4.8033 22 6 1.4664 3.5701 -4.2605 23 6 1.5003 2.5556 -5.3743 24 8 0.4740 3.6826 -3.5726 25 7 4.1432 4.8062 -1.2144 26 7 4.1558 4.2522 -0.0520 27 6 2.9457 3.9000 0.2761 28 6 2.5030 3.2404 1.5569 29 1 -0.3633 -0.9954 -0.2555 30 1 -0.3633 0.2765 0.9897 31 1 -0.3633 0.7189 -0.7344 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.9141 -0.0910 -2.8810 35 1 -0.3249 1.8609 0.4921 36 1 -0.2292 2.5146 2.1409 37 1 -0.9283 4.2665 0.5669 38 1 0.6799 4.6407 1.2296 39 1 0.5097 3.0451 -1.3225 40 1 0.2172 4.8011 -1.3925 41 1 3.1325 6.2204 -3.2820 42 1 1.4529 5.7593 -2.9153 43 1 4.3852 3.4011 -4.3221 44 1 3.5136 3.8347 -5.8124 45 1 4.3179 5.0991 -4.8518 46 1 1.8480 1.5990 -4.9840 47 1 0.4990 2.4368 -5.7881 48 1 2.1785 2.8971 -6.1564 49 1 3.3752 2.8751 2.0989 50 1 1.9667 3.9628 2.1722 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255170020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:03 Heat of formation + Delta-G solvation = 91.219131 kcal Electronic energy + Delta-G solvation = -33495.973912 eV Core-core repulsion = 29561.601582 eV Total energy + Delta-G solvation = -3934.372330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.50316 -39.45497 -38.53855 -35.45276 -34.65806 -32.99881 -32.04446 -30.98885 -30.94139 -29.18366 -27.39207 -27.21235 -26.06779 -25.06546 -24.52142 -22.86513 -20.91027 -20.60254 -19.98327 -19.04963 -18.87014 -16.82561 -16.50768 -16.32996 -16.13392 -15.65220 -15.34694 -15.20305 -14.31675 -14.08166 -13.80006 -13.69319 -13.52381 -13.08029 -13.02472 -12.91438 -12.63087 -12.50196 -12.28564 -12.16504 -11.95634 -11.84251 -11.63036 -11.53656 -11.39943 -11.08728 -10.97746 -10.84179 -10.64292 -10.51919 -10.44092 -9.98102 -9.64549 -9.60393 -9.44323 -9.31749 -9.17013 -8.73157 -8.59684 -8.39182 -8.04765 -7.32266 -5.99522 -3.98528 2.48563 2.92810 3.31909 3.36613 3.41630 3.44581 3.61524 3.94648 4.52119 4.74054 4.84721 4.89352 5.01139 5.12381 5.13188 5.16583 5.25201 5.38093 5.43368 5.43491 5.53233 5.55862 5.68625 5.80531 5.91125 5.94683 6.00461 6.03750 6.11331 6.15626 6.18976 6.23886 6.28646 6.40569 6.50757 6.56847 6.65892 6.86848 6.88470 7.04235 7.13433 7.23746 7.47171 7.54597 7.67752 7.78607 7.86064 8.04421 8.27533 8.38562 8.50315 9.02809 9.64775 9.72941 11.05436 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009343 B = 0.007767 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.169672 B = 3604.042524 C = 4261.085298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C 0.205 3.795 4 H 0.019 0.981 5 C -0.500 4.500 6 H 0.071 0.929 7 C 0.074 3.926 8 N -0.889 5.889 9 Si 0.883 3.117 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.260 1.260 13 N -0.526 5.526 14 C 0.021 3.979 15 C -0.170 4.170 16 C 0.114 3.886 17 N -0.447 5.447 18 C 0.128 3.872 19 C 0.213 3.787 20 N -0.607 5.607 21 C 0.082 3.918 22 C 0.524 3.476 23 C -0.173 4.173 24 O -0.548 6.548 25 N -0.288 5.288 26 N -0.295 5.295 27 C 0.218 3.782 28 C 0.150 3.850 29 H 0.032 0.968 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.041 0.959 34 H 0.255 0.745 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.103 0.897 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.102 0.898 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 7.648 -4.156 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C 0.099 3.901 4 H 0.036 0.964 5 C -0.539 4.539 6 H 0.089 0.911 7 C -0.128 4.128 8 N -0.528 5.528 9 Si 0.711 3.289 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.184 1.184 13 N -0.249 5.249 14 C -0.107 4.107 15 C -0.210 4.210 16 C -0.009 4.009 17 N -0.138 5.138 18 C -0.140 4.140 19 C 0.087 3.913 20 N -0.341 5.341 21 C -0.061 4.061 22 C 0.313 3.687 23 C -0.232 4.232 24 O -0.426 6.426 25 N -0.131 5.131 26 N -0.136 5.136 27 C -0.050 4.050 28 C 0.019 3.981 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.121 0.879 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.121 0.879 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.934 7.483 -3.511 10.175 hybrid contribution -0.240 0.018 -1.030 1.057 sum -6.174 7.501 -4.540 10.723 Atomic orbital electron populations 1.22108 0.99987 0.99106 0.99560 1.21568 0.91087 0.99535 1.02556 1.19677 0.95400 0.90790 0.84208 0.96386 1.21343 0.90315 1.36144 1.06070 0.91138 1.24720 0.97833 0.94832 0.95431 1.69913 1.34707 1.38392 1.09800 0.86666 0.86501 0.78742 0.77007 1.21249 1.21851 1.18408 1.62512 0.99727 1.23126 1.39537 1.22829 0.92981 0.93752 1.01186 1.22655 1.01709 1.00923 0.95686 1.22009 0.76724 1.04282 0.97862 1.45696 1.09579 1.43643 1.14835 1.24455 0.88856 1.05084 0.95574 1.19450 1.02207 0.88946 0.80655 1.47820 1.14017 1.35351 1.36915 1.21850 0.86253 1.02789 0.95238 1.20720 0.82083 0.80763 0.85089 1.21949 1.04299 0.99844 0.97148 1.90625 1.33354 1.68838 1.49819 1.74093 1.16233 1.17633 1.05162 1.74027 1.16977 1.15317 1.07273 1.24982 0.87211 0.98844 0.93958 1.20708 0.97953 0.90572 0.88836 0.94936 0.93396 0.94083 0.88808 0.94035 0.93532 0.88565 0.91640 0.90177 0.90958 0.88042 0.89898 0.87938 0.89116 0.91990 0.90979 0.90910 0.87891 0.89494 0.90431 0.87948 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.21 37.16 0.30 -2.58 16 2 C -0.11 -2.52 5.44 -26.73 -0.15 -2.67 16 3 C 0.20 4.78 1.03 -68.86 -0.07 4.71 16 4 H 0.02 0.48 4.15 -51.93 -0.22 0.26 16 5 C -0.50 -13.19 5.94 -34.44 -0.20 -13.39 16 6 H 0.07 1.95 5.17 -52.49 -0.27 1.68 16 7 C 0.07 2.00 5.30 -17.82 -0.09 1.91 16 8 N -0.89 -24.25 11.30 55.43 0.63 -23.62 16 9 Si 0.88 22.58 29.54 -169.99 -5.02 17.56 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.26 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.53 -10.54 4.78 -229.92 -1.10 -11.64 16 14 C 0.02 0.34 4.65 -4.27 -0.02 0.32 16 15 C -0.17 -2.57 5.54 -26.82 -0.15 -2.72 16 16 C 0.11 2.04 4.29 -4.03 -0.02 2.02 16 17 N -0.45 -8.98 2.50 -110.84 -0.28 -9.26 16 18 C 0.13 2.56 7.63 -155.26 -1.18 1.38 16 19 C 0.21 3.32 5.78 -5.19 -0.03 3.29 16 20 N -0.61 -9.45 2.86 -182.95 -0.52 -9.97 16 21 C 0.08 1.07 10.30 59.85 0.62 1.69 16 22 C 0.52 8.74 7.77 -10.98 -0.09 8.65 16 23 C -0.17 -2.32 9.74 36.01 0.35 -1.97 16 24 O -0.55 -10.44 13.55 5.56 0.08 -10.36 16 25 N -0.29 -6.60 12.23 32.74 0.40 -6.20 16 26 N -0.30 -7.10 11.37 32.74 0.37 -6.73 16 27 C 0.22 4.73 4.12 -155.31 -0.64 4.09 16 28 C 0.15 2.94 5.06 -4.86 -0.02 2.92 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.84 6.45 -51.93 -0.34 0.50 16 31 H 0.04 0.79 7.00 -51.93 -0.36 0.43 16 32 H 0.09 2.45 5.99 -51.93 -0.31 2.14 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.10 1.66 3.47 -51.93 -0.18 1.48 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.09 5.75 -51.93 -0.30 0.79 16 39 H 0.10 2.14 4.96 -51.93 -0.26 1.89 16 40 H 0.08 1.37 6.85 -51.93 -0.36 1.02 16 41 H 0.10 1.32 7.87 -51.93 -0.41 0.91 16 42 H 0.09 1.33 6.69 -51.93 -0.35 0.98 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 0.73 5.83 -51.92 -0.30 0.42 16 45 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 46 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 47 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.08 0.80 5.87 -51.93 -0.30 0.50 16 49 H 0.10 2.11 7.09 -51.93 -0.37 1.74 16 50 H 0.07 1.16 6.28 -51.92 -0.33 0.84 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -32.38 362.84 -8.52 -40.90 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.15 Total: 6.21 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -1.39 Total: 7.64 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -0.50 Total: -67.42 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.38 -8.52 -40.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.124 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds