Wall clock time and date at job start Tue Mar 31 2020 18:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46906 * 2 1 4 4 H 1.09001 * 109.47384 * 303.23174 * 3 2 1 5 5 C 1.50703 * 109.47065 * 183.23404 * 3 2 1 6 6 H 1.07997 * 120.00100 * 240.00022 * 5 3 2 7 7 C 1.37880 * 120.00122 * 59.99593 * 5 3 2 8 8 N 1.31512 * 119.99698 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00066 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46955 * 90.00471 * 9 7 5 11 11 H 1.48500 * 109.46849 * 210.00373 * 9 7 5 12 12 H 1.48497 * 109.47120 * 330.00029 * 9 7 5 13 13 N 1.46903 * 109.47360 * 63.23298 * 3 2 1 14 14 C 1.46430 * 110.99825 * 280.51841 * 13 3 2 15 15 C 1.52625 * 110.96956 * 269.50902 * 14 13 3 16 16 C 1.53193 * 109.67532 * 61.84343 * 15 14 13 17 17 N 1.46345 * 108.93577 * 272.33008 * 16 15 14 18 18 C 1.35002 * 127.63959 * 206.46483 * 17 16 15 19 19 C 1.50703 * 126.45664 * 2.29152 * 18 17 16 20 20 N 1.46499 * 109.46634 * 269.71134 * 19 18 17 21 21 C 1.46498 * 119.99900 * 269.99831 * 20 19 18 22 22 C 1.34777 * 120.00270 * 90.00079 * 20 19 18 23 23 C 1.50702 * 120.00031 * 176.13755 * 22 20 19 24 24 O 1.21278 * 119.99648 * 356.13560 * 22 20 19 25 25 N 1.30725 * 107.08762 * 182.02166 * 18 17 16 26 26 N 1.28773 * 109.70740 * 359.84071 * 25 18 17 27 27 C 1.30231 * 109.55400 * 359.79292 * 26 25 18 28 28 C 1.47102 * 110.99609 * 156.11995 * 13 3 2 29 29 H 1.09004 * 109.47020 * 165.60411 * 1 2 3 30 30 H 1.08996 * 109.46998 * 285.60769 * 1 2 3 31 31 H 1.09000 * 109.47115 * 45.61141 * 1 2 3 32 32 H 1.08999 * 109.47468 * 239.99515 * 2 1 3 33 33 H 1.09000 * 109.46928 * 119.99370 * 2 1 3 34 34 H 0.97006 * 119.99755 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.18380 * 29.89045 * 14 13 3 36 36 H 1.09001 * 109.17717 * 149.12891 * 14 13 3 37 37 H 1.09002 * 109.44015 * 181.90663 * 15 14 13 38 38 H 1.09000 * 109.43549 * 301.78080 * 15 14 13 39 39 H 1.09004 * 109.53774 * 32.41191 * 16 15 14 40 40 H 1.08999 * 109.54212 * 152.67208 * 16 15 14 41 41 H 1.08996 * 109.47167 * 149.71420 * 19 18 17 42 42 H 1.08991 * 109.46807 * 29.70654 * 19 18 17 43 43 H 1.09003 * 109.47643 * 93.06752 * 21 20 19 44 44 H 1.09008 * 109.47366 * 213.07117 * 21 20 19 45 45 H 1.09001 * 109.47360 * 333.06740 * 21 20 19 46 46 H 1.09004 * 109.46991 * 91.91596 * 23 22 20 47 47 H 1.08997 * 109.46892 * 211.91266 * 23 22 20 48 48 H 1.09002 * 109.47162 * 331.91501 * 23 22 20 49 49 H 1.08995 * 109.52619 * 275.56393 * 28 13 3 50 50 H 1.09008 * 109.52259 * 155.36800 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6301 1.9729 -0.8596 5 6 3.5448 1.4433 -0.0802 6 1 4.1274 1.8959 0.7086 7 6 4.1780 0.8661 -1.1604 8 7 3.4686 0.3154 -2.1211 9 14 6.0434 0.8665 -1.2594 10 1 6.5738 -0.3590 -0.6098 11 1 6.4635 0.8932 -2.6835 12 1 6.5758 2.0656 -0.5638 13 7 1.6151 2.1122 1.2366 14 6 0.2181 2.5420 1.1472 15 6 0.1174 3.9597 0.5910 16 6 0.6931 3.9991 -0.8281 17 7 2.1332 4.2473 -0.7497 18 6 2.9217 4.8267 -1.6798 19 6 2.4768 5.3959 -3.0023 20 7 2.5392 4.3525 -4.0287 21 6 3.7676 4.1595 -4.8033 22 6 1.4664 3.5701 -4.2605 23 6 1.5003 2.5556 -5.3743 24 8 0.4740 3.6826 -3.5726 25 7 4.1432 4.8062 -1.2144 26 7 4.1558 4.2522 -0.0520 27 6 2.9457 3.9000 0.2761 28 6 2.5030 3.2404 1.5569 29 1 -0.3633 -0.9954 -0.2555 30 1 -0.3633 0.2765 0.9897 31 1 -0.3633 0.7189 -0.7344 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.9141 -0.0910 -2.8810 35 1 -0.3249 1.8609 0.4921 36 1 -0.2292 2.5146 2.1409 37 1 -0.9283 4.2665 0.5669 38 1 0.6799 4.6407 1.2296 39 1 0.5097 3.0451 -1.3225 40 1 0.2172 4.8011 -1.3925 41 1 3.1325 6.2204 -3.2820 42 1 1.4529 5.7593 -2.9153 43 1 4.3852 3.4011 -4.3221 44 1 3.5136 3.8347 -5.8124 45 1 4.3179 5.0991 -4.8518 46 1 1.8480 1.5990 -4.9840 47 1 0.4990 2.4368 -5.7881 48 1 2.1785 2.8971 -6.1564 49 1 3.3752 2.8751 2.0989 50 1 1.9667 3.9628 2.1722 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255170020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:02 Heat of formation + Delta-G solvation = 69.151426 kcal Electronic energy + Delta-G solvation = -33496.930840 eV Core-core repulsion = 29561.601582 eV Total energy + Delta-G solvation = -3935.329258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.10554 -40.73261 -40.11452 -36.74813 -36.29754 -34.76602 -33.76179 -32.57832 -32.32419 -30.54100 -29.06753 -28.56702 -27.42718 -26.59225 -26.09281 -24.60399 -22.52566 -22.19955 -21.39237 -20.59218 -20.32231 -18.41126 -18.06251 -17.83392 -17.53960 -17.21332 -16.91859 -16.57994 -16.18215 -15.67050 -15.37694 -15.17408 -14.94611 -14.66163 -14.36050 -14.18889 -14.06973 -13.79052 -13.67563 -13.50999 -13.43891 -13.32506 -13.10761 -12.94852 -12.84385 -12.75424 -12.61004 -12.54684 -12.49247 -12.17911 -12.09232 -11.84829 -11.49351 -11.11077 -10.98741 -10.88546 -10.74446 -10.59080 -10.44856 -9.92268 -9.69165 -8.94876 -8.09522 -6.09063 0.98624 1.27673 1.29492 1.48935 1.61356 1.88638 2.01869 2.39099 2.43541 3.19791 3.33593 3.44060 3.62846 3.66100 3.71684 3.80380 4.02669 4.12027 4.17356 4.26609 4.36465 4.40959 4.47372 4.50057 4.58146 4.59199 4.65574 4.71018 4.72557 4.79498 4.82069 4.87119 4.95983 5.05347 5.10632 5.13216 5.20152 5.26454 5.30870 5.39065 5.48647 5.54449 5.65723 5.79514 5.87270 6.24299 6.25323 6.32969 6.36467 6.72376 6.97932 7.11464 7.54435 8.07453 8.94183 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009343 B = 0.007767 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.169672 B = 3604.042524 C = 4261.085298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.219 3.781 4 H 0.000 1.000 5 C -0.496 4.496 6 H 0.053 0.947 7 C 0.041 3.959 8 N -0.900 5.900 9 Si 0.916 3.084 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.282 1.282 13 N -0.530 5.530 14 C 0.018 3.982 15 C -0.160 4.160 16 C 0.118 3.882 17 N -0.449 5.449 18 C 0.135 3.865 19 C 0.210 3.790 20 N -0.608 5.608 21 C 0.081 3.919 22 C 0.510 3.490 23 C -0.166 4.166 24 O -0.576 6.576 25 N -0.324 5.324 26 N -0.337 5.337 27 C 0.212 3.788 28 C 0.151 3.849 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.028 0.972 34 H 0.253 0.747 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.132 0.868 42 H 0.102 0.898 43 H 0.020 0.980 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.101 0.899 48 H 0.110 0.890 49 H 0.084 0.916 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.093 8.842 -4.414 13.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.146 4.146 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.535 4.535 6 H 0.071 0.929 7 C -0.158 4.158 8 N -0.541 5.541 9 Si 0.745 3.255 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.208 1.208 13 N -0.254 5.254 14 C -0.110 4.110 15 C -0.199 4.199 16 C -0.004 4.004 17 N -0.139 5.139 18 C -0.134 4.134 19 C 0.085 3.915 20 N -0.341 5.341 21 C -0.061 4.061 22 C 0.301 3.699 23 C -0.224 4.224 24 O -0.456 6.456 25 N -0.165 5.165 26 N -0.177 5.177 27 C -0.058 4.058 28 C 0.020 3.980 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.150 0.850 42 H 0.121 0.879 43 H 0.039 0.961 44 H 0.125 0.875 45 H 0.115 0.885 46 H 0.096 0.904 47 H 0.120 0.880 48 H 0.128 0.872 49 H 0.102 0.898 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.084 8.666 -3.775 12.437 hybrid contribution 0.437 -0.314 -0.942 1.085 sum -7.647 8.352 -4.717 12.267 Atomic orbital electron populations 1.21938 0.96569 0.99899 1.00812 1.21410 0.94139 0.98796 1.00207 1.19331 0.93240 0.91095 0.85091 0.98251 1.21470 0.92185 1.34798 1.04999 0.92928 1.25074 0.99216 0.95579 0.95958 1.69978 1.34842 1.39285 1.10000 0.86182 0.85067 0.77611 0.76665 1.20859 1.21547 1.20780 1.62400 1.01743 1.23740 1.37477 1.22945 0.90483 0.94549 1.03007 1.22622 1.03839 0.99975 0.93490 1.22055 0.75563 1.02993 0.99802 1.45919 1.10450 1.43140 1.14365 1.25299 0.88198 1.03400 0.96538 1.19763 1.03504 0.89468 0.78805 1.47944 1.14426 1.35067 1.36661 1.21978 0.85090 1.02966 0.96055 1.21357 0.81947 0.81071 0.85549 1.21920 1.06072 0.97582 0.96865 1.90597 1.34458 1.69636 1.50871 1.73996 1.17981 1.19193 1.05370 1.73925 1.18684 1.16791 1.08322 1.25270 0.86992 0.98656 0.94855 1.20775 0.97797 0.91026 0.88379 0.93732 0.91139 0.94382 0.92161 0.95297 0.93767 0.89054 0.88501 0.86360 0.90449 0.91237 0.88534 0.85044 0.87942 0.96083 0.87541 0.88467 0.90369 0.88015 0.87152 0.89776 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 8.21 71.98 0.59 -4.37 16 2 C -0.11 -4.96 5.44 30.60 0.17 -4.80 16 3 C 0.22 10.26 1.03 44.17 0.05 10.31 16 4 H 0.00 0.01 4.15 -2.39 -0.01 0.00 16 5 C -0.50 -26.78 5.94 25.60 0.15 -26.63 16 6 H 0.05 3.01 5.17 -2.91 -0.02 2.99 16 7 C 0.04 2.32 5.30 84.66 0.45 2.76 16 8 N -0.90 -50.51 11.30 21.45 0.24 -50.27 16 9 Si 0.92 47.79 29.54 68.60 2.03 49.82 16 10 H -0.28 -14.39 7.11 99.48 0.71 -13.69 16 11 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 12 H -0.28 -15.68 7.11 99.48 0.71 -14.97 16 13 N -0.53 -20.57 4.78 -881.34 -4.21 -24.78 16 14 C 0.02 0.53 4.65 86.27 0.40 0.93 16 15 C -0.16 -4.28 5.54 30.53 0.17 -4.11 16 16 C 0.12 4.01 4.29 86.47 0.37 4.38 16 17 N -0.45 -17.75 2.50 -504.57 -1.26 -19.01 16 18 C 0.14 5.36 7.63 138.08 1.05 6.41 16 19 C 0.21 6.24 5.78 85.63 0.50 6.74 16 20 N -0.61 -18.17 2.86 -851.13 -2.43 -20.60 16 21 C 0.08 2.02 10.30 127.77 1.32 3.34 16 22 C 0.51 16.51 7.77 87.66 0.68 17.19 16 23 C -0.17 -4.22 9.74 71.24 0.69 -3.53 16 24 O -0.58 -21.45 13.55 -3.02 -0.04 -21.49 16 25 N -0.32 -15.03 12.23 -50.34 -0.62 -15.65 16 26 N -0.34 -16.59 11.37 -50.34 -0.57 -17.16 16 27 C 0.21 9.18 4.12 138.10 0.57 9.75 16 28 C 0.15 5.79 5.06 85.52 0.43 6.23 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 2.26 6.45 -2.39 -0.02 2.24 16 31 H 0.04 1.41 7.00 -2.39 -0.02 1.40 16 32 H 0.06 3.22 5.99 -2.39 -0.01 3.20 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 35 H 0.09 2.88 3.47 -2.39 -0.01 2.87 16 36 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.08 2.04 5.75 -2.39 -0.01 2.02 16 39 H 0.07 2.89 4.96 -2.39 -0.01 2.88 16 40 H 0.10 2.99 6.85 -2.39 -0.02 2.97 16 41 H 0.13 3.09 7.87 -2.39 -0.02 3.07 16 42 H 0.10 2.81 6.69 -2.39 -0.02 2.79 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.11 1.86 5.83 -2.38 -0.01 1.85 16 45 H 0.10 1.92 7.86 -2.39 -0.02 1.91 16 46 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 47 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 48 H 0.11 1.99 5.87 -2.39 -0.01 1.98 16 49 H 0.08 3.52 7.09 -2.39 -0.02 3.50 16 50 H 0.11 3.27 6.28 -2.38 -0.01 3.25 16 Total: -1.00 -74.16 362.84 1.70 -72.46 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.98 Total: 22.07 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 7.59 Total: 24.61 kcal Atomic # 7 Polarization: -138.62 SS G_CDS: -8.85 Total: -147.47 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.04 Total: -21.49 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -74.16 1.70 -72.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.613 kcal (2) G-P(sol) polarization free energy of solvation -74.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds