Wall clock time and date at job start Tue Mar 31 2020 18:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47183 * 2 1 4 4 H 1.08996 * 109.38927 * 305.21217 * 3 2 1 5 5 C 1.50250 * 109.51873 * 185.66529 * 3 2 1 6 6 O 1.21279 * 118.61468 * 42.72969 * 5 3 2 7 7 N 1.33720 * 122.75817 * 222.97525 * 5 3 2 8 8 C 1.46006 * 122.92961 * 1.17965 * 7 5 3 9 9 C 1.52983 * 110.04100 * 342.09790 * 8 7 5 10 10 N 1.46902 * 109.38491 * 65.00243 * 3 2 1 11 11 C 1.38580 * 111.00115 * 47.08822 * 10 3 2 12 12 N 1.31213 * 126.47333 * 34.26291 * 11 10 3 13 13 N 1.28533 * 109.86257 * 179.97438 * 12 11 10 14 14 C 1.30293 * 110.04915 * 359.97438 * 13 12 11 15 15 C 1.50701 * 126.34673 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47020 * 89.97736 * 15 14 13 17 17 C 1.53005 * 109.47278 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.46994 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00446 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99706 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00399 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99940 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47210 * 59.99878 * 22 20 18 24 24 H 1.48503 * 109.47421 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47313 * 299.99878 * 22 20 18 26 26 N 1.36456 * 126.47172 * 213.95149 * 11 10 3 27 27 C 1.46496 * 127.13707 * 0.04319 * 26 11 10 28 28 C 1.52996 * 109.47637 * 95.60100 * 27 26 11 29 29 H 1.09001 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46837 * 299.99810 * 1 2 3 31 31 H 1.08995 * 109.47077 * 59.99705 * 1 2 3 32 32 H 1.09005 * 109.46837 * 240.00190 * 2 1 3 33 33 H 1.09005 * 109.47108 * 120.00300 * 2 1 3 34 34 H 0.97003 * 118.53428 * 181.46151 * 7 5 3 35 35 H 1.09003 * 109.37593 * 102.26968 * 8 7 5 36 36 H 1.08997 * 109.38078 * 222.03817 * 8 7 5 37 37 H 1.08998 * 109.59521 * 170.06188 * 9 8 7 38 38 H 1.09002 * 109.59485 * 290.51695 * 9 8 7 39 39 H 1.08998 * 109.47342 * 209.98114 * 15 14 13 40 40 H 1.09003 * 109.47321 * 329.98314 * 15 14 13 41 41 H 1.08998 * 109.47371 * 300.00360 * 16 15 14 42 42 H 1.09006 * 109.47391 * 60.00574 * 16 15 14 43 43 H 1.08998 * 109.47142 * 300.00413 * 17 16 15 44 44 H 1.08996 * 109.46963 * 60.00193 * 17 16 15 45 45 H 0.96996 * 120.00517 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.47160 * 215.60548 * 27 26 11 47 47 H 1.08998 * 109.47139 * 335.59880 * 27 26 11 48 48 H 1.09003 * 109.46799 * 64.82986 * 28 27 26 49 49 H 1.09002 * 109.47092 * 184.82845 * 28 27 26 50 50 H 1.08999 * 109.47457 * 304.82934 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9812 -0.8400 5 6 3.5359 1.4460 -0.1398 6 8 4.0465 0.6895 -0.9385 7 7 4.3283 2.2448 0.5828 8 6 3.8168 3.1686 1.5912 9 6 2.3202 3.4025 1.3769 10 7 1.6504 2.0974 1.2559 11 6 1.9349 1.2903 2.3459 12 7 2.9514 0.4690 2.4642 13 7 2.9063 -0.1201 3.6057 14 6 1.8673 0.2874 4.2780 15 6 1.4633 -0.1636 5.6580 16 6 2.1165 0.7435 6.7026 17 6 1.7069 0.2852 8.1037 18 6 2.3498 1.1791 9.1326 19 1 2.9872 1.9924 8.8187 20 6 2.1251 0.9579 10.4749 21 7 1.3494 -0.0328 10.8573 22 14 2.9227 2.0655 11.7503 23 1 2.4768 3.4660 11.5379 24 1 2.5260 1.6200 13.1103 25 1 4.3998 1.9906 11.6167 26 7 1.2141 1.2039 3.5014 27 6 -0.0077 1.9384 3.8386 28 6 -1.2283 1.0768 3.5090 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 5.2852 2.2119 0.4274 35 1 3.9785 2.7469 2.5832 36 1 4.3446 4.1190 1.5119 37 1 1.9098 3.9465 2.2276 38 1 2.1672 3.9779 0.4639 39 1 0.3791 -0.1081 5.7555 40 1 1.7899 -1.1917 5.8144 41 1 3.2007 0.6879 6.6050 42 1 1.7898 1.7716 6.5463 43 1 0.6227 0.3404 8.2016 44 1 2.0338 -0.7428 8.2598 45 1 1.1916 -0.1886 11.8016 46 1 -0.0071 2.1758 4.9024 47 1 -0.0479 2.8616 3.2605 48 1 -1.2335 0.1943 4.1487 49 1 -2.1371 1.6541 3.6789 50 1 -1.1839 0.7682 2.4645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263018506.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:47 Heat of formation + Delta-G solvation = 46.001244 kcal Electronic energy + Delta-G solvation = -30790.559013 eV Core-core repulsion = 26854.225888 eV Total energy + Delta-G solvation = -3936.333125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.18866 -40.83057 -37.66344 -35.89517 -35.52873 -34.72575 -32.90656 -32.41383 -30.59265 -30.07650 -29.32559 -27.35897 -26.45739 -24.53699 -23.81646 -23.56055 -22.14697 -21.52193 -20.82895 -20.15703 -19.42469 -17.59301 -17.53468 -16.82455 -16.32355 -16.22882 -15.84068 -15.46395 -15.11184 -14.88521 -14.50384 -14.33774 -14.12028 -13.92718 -13.80921 -13.45280 -13.23243 -12.99449 -12.63472 -12.50784 -12.36593 -12.20470 -12.06990 -11.95954 -11.63306 -11.54569 -11.39082 -11.31991 -11.05774 -10.91315 -10.86444 -10.71347 -10.61279 -10.20915 -10.08143 -9.81113 -9.57239 -9.28252 -9.25813 -9.12521 -8.49004 -8.40152 -6.05353 -4.08033 1.72640 2.10375 2.48129 2.86934 2.99973 3.29395 3.34498 3.36686 3.41642 4.09245 4.28147 4.37621 4.40778 4.48960 4.52545 4.59741 4.76639 4.79904 4.88866 4.96361 5.06772 5.10934 5.14705 5.25810 5.30756 5.33343 5.38841 5.41935 5.49116 5.52712 5.77926 5.79791 5.81084 5.83761 5.96144 6.00993 6.07529 6.16009 6.22117 6.50861 6.55381 6.60080 6.68950 6.96460 7.09231 7.09986 7.59066 7.72307 7.93370 8.03371 8.35452 8.83726 8.98230 9.56352 11.05831 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017512 B = 0.002849 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.489965 B = 9824.292045 C =10428.865975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.091 3.909 4 H 0.124 0.876 5 C 0.511 3.489 6 O -0.547 6.547 7 N -0.710 5.710 8 C 0.079 3.921 9 C 0.040 3.960 10 N -0.445 5.445 11 C 0.323 3.677 12 N -0.303 5.303 13 N -0.290 5.290 14 C 0.209 3.791 15 C -0.037 4.037 16 C -0.101 4.101 17 C 0.023 3.977 18 C -0.522 4.522 19 H 0.053 0.947 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.276 1.276 26 N -0.462 5.462 27 C 0.105 3.895 28 C -0.170 4.170 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.401 0.599 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.017 0.983 44 H 0.020 0.980 45 H 0.262 0.738 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.193 8.421 -21.990 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.020 4.020 4 H 0.142 0.858 5 C 0.296 3.704 6 O -0.423 6.423 7 N -0.362 5.362 8 C -0.048 4.048 9 C -0.088 4.088 10 N -0.170 5.170 11 C -0.033 4.033 12 N -0.147 5.147 13 N -0.130 5.130 14 C -0.058 4.058 15 C -0.077 4.077 16 C -0.140 4.140 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 N -0.155 5.155 27 C -0.018 4.018 28 C -0.228 4.228 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.237 0.763 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.118 0.882 47 H 0.114 0.886 48 H 0.084 0.916 49 H 0.097 0.903 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.523 7.288 -22.569 24.144 hybrid contribution 0.395 1.391 1.219 1.891 sum -4.128 8.679 -21.351 23.414 Atomic orbital electron populations 1.21756 0.94674 1.01669 1.02132 1.21686 0.96508 0.92567 1.04924 1.21899 0.90576 0.98582 0.90960 0.85802 1.20583 0.90556 0.79214 0.80043 1.90731 1.75380 1.38824 1.37398 1.45293 1.10778 1.41046 1.39076 1.22000 0.95765 0.94019 0.92974 1.22727 0.91268 0.89700 1.05083 1.59303 1.56534 1.02491 0.98652 1.22098 0.91826 1.01247 0.88145 1.74656 1.16912 1.10082 1.13061 1.74104 1.17045 1.22017 0.99828 1.25345 0.91931 0.91383 0.97117 1.20389 1.01143 1.02060 0.84117 1.21644 0.99846 0.96789 0.95723 1.19089 0.96692 0.96966 0.88621 1.21167 1.29406 1.14405 0.91090 0.92828 1.25002 0.95248 0.95389 0.98661 1.69937 1.37456 1.29848 1.16124 0.86673 0.79914 0.80898 0.80606 1.20289 1.21243 1.20199 1.46357 1.22356 1.33205 1.13580 1.21895 0.81444 0.95176 1.03248 1.22205 0.96782 1.00838 1.02960 0.92649 0.92042 0.92622 0.89703 0.89936 0.76261 0.91131 0.89628 0.88055 0.87997 0.90304 0.88451 0.92508 0.93663 0.96496 0.96165 0.92873 0.88181 0.88561 0.91554 0.90271 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.78 37.16 0.36 -0.96 16 2 C -0.12 -1.38 4.81 -26.73 -0.13 -1.50 16 3 C 0.09 0.94 2.36 -69.08 -0.16 0.77 16 4 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 5 C 0.51 6.52 6.08 -11.67 -0.07 6.45 16 6 O -0.55 -8.98 16.97 5.56 0.09 -8.88 16 7 N -0.71 -7.57 5.23 -61.07 -0.32 -7.89 16 8 C 0.08 0.67 6.46 -4.32 -0.03 0.64 16 9 C 0.04 0.28 6.02 -3.67 -0.02 0.26 16 10 N -0.44 -4.21 4.40 -168.29 -0.74 -4.95 16 11 C 0.32 4.08 4.12 -318.88 -1.31 2.77 16 12 N -0.30 -4.87 7.97 30.31 0.24 -4.63 16 13 N -0.29 -5.18 12.18 32.99 0.40 -4.78 16 14 C 0.21 3.25 7.32 -154.02 -1.13 2.12 16 15 C -0.04 -0.59 5.53 -27.88 -0.15 -0.74 16 16 C -0.10 -1.94 5.13 -26.73 -0.14 -2.08 16 17 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 18 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 19 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 22 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 N -0.46 -5.73 2.81 -114.09 -0.32 -6.05 16 27 C 0.11 0.95 6.57 -4.05 -0.03 0.93 16 28 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.58 5.24 -51.93 -0.27 0.31 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 1.03 7.64 -51.93 -0.40 0.63 16 33 H 0.08 1.23 5.59 -51.93 -0.29 0.94 16 34 H 0.40 4.07 8.84 -40.82 -0.36 3.70 16 35 H 0.07 0.81 7.05 -51.93 -0.37 0.45 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 39 H 0.08 1.10 7.59 -51.93 -0.39 0.71 16 40 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.10 0.94 8.07 -51.93 -0.42 0.52 16 47 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 48 H 0.07 0.61 7.75 -51.93 -0.40 0.20 16 49 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.56 5.86 -51.93 -0.30 0.26 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -34.44 393.11 -10.22 -44.66 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.24 Total: 0.82 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -2.98 Total: -4.97 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.00 Total: -53.69 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.44 -10.22 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263018506.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.661 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds