Wall clock time and date at job start Tue Mar 31 2020 18:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47183 * 2 1 4 4 H 1.08996 * 109.38927 * 305.21217 * 3 2 1 5 5 C 1.50250 * 109.51873 * 185.66529 * 3 2 1 6 6 O 1.21279 * 118.61468 * 42.72969 * 5 3 2 7 7 N 1.33720 * 122.75817 * 222.97525 * 5 3 2 8 8 C 1.46006 * 122.92961 * 1.17965 * 7 5 3 9 9 C 1.52983 * 110.04100 * 342.09790 * 8 7 5 10 10 N 1.46902 * 109.38491 * 65.00243 * 3 2 1 11 11 C 1.38580 * 111.00115 * 47.08822 * 10 3 2 12 12 N 1.31213 * 126.47333 * 34.26291 * 11 10 3 13 13 N 1.28533 * 109.86257 * 179.97438 * 12 11 10 14 14 C 1.30293 * 110.04915 * 359.97438 * 13 12 11 15 15 C 1.50701 * 126.34673 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47020 * 89.97736 * 15 14 13 17 17 C 1.53005 * 109.47278 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.46994 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00446 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99706 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00399 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99940 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47210 * 59.99878 * 22 20 18 24 24 H 1.48503 * 109.47421 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47313 * 299.99878 * 22 20 18 26 26 N 1.36456 * 126.47172 * 213.95149 * 11 10 3 27 27 C 1.46496 * 127.13707 * 0.04319 * 26 11 10 28 28 C 1.52996 * 109.47637 * 95.60100 * 27 26 11 29 29 H 1.09001 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46837 * 299.99810 * 1 2 3 31 31 H 1.08995 * 109.47077 * 59.99705 * 1 2 3 32 32 H 1.09005 * 109.46837 * 240.00190 * 2 1 3 33 33 H 1.09005 * 109.47108 * 120.00300 * 2 1 3 34 34 H 0.97003 * 118.53428 * 181.46151 * 7 5 3 35 35 H 1.09003 * 109.37593 * 102.26968 * 8 7 5 36 36 H 1.08997 * 109.38078 * 222.03817 * 8 7 5 37 37 H 1.08998 * 109.59521 * 170.06188 * 9 8 7 38 38 H 1.09002 * 109.59485 * 290.51695 * 9 8 7 39 39 H 1.08998 * 109.47342 * 209.98114 * 15 14 13 40 40 H 1.09003 * 109.47321 * 329.98314 * 15 14 13 41 41 H 1.08998 * 109.47371 * 300.00360 * 16 15 14 42 42 H 1.09006 * 109.47391 * 60.00574 * 16 15 14 43 43 H 1.08998 * 109.47142 * 300.00413 * 17 16 15 44 44 H 1.08996 * 109.46963 * 60.00193 * 17 16 15 45 45 H 0.96996 * 120.00517 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.47160 * 215.60548 * 27 26 11 47 47 H 1.08998 * 109.47139 * 335.59880 * 27 26 11 48 48 H 1.09003 * 109.46799 * 64.82986 * 28 27 26 49 49 H 1.09002 * 109.47092 * 184.82845 * 28 27 26 50 50 H 1.08999 * 109.47457 * 304.82934 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9812 -0.8400 5 6 3.5359 1.4460 -0.1398 6 8 4.0465 0.6895 -0.9385 7 7 4.3283 2.2448 0.5828 8 6 3.8168 3.1686 1.5912 9 6 2.3202 3.4025 1.3769 10 7 1.6504 2.0974 1.2559 11 6 1.9349 1.2903 2.3459 12 7 2.9514 0.4690 2.4642 13 7 2.9063 -0.1201 3.6057 14 6 1.8673 0.2874 4.2780 15 6 1.4633 -0.1636 5.6580 16 6 2.1165 0.7435 6.7026 17 6 1.7069 0.2852 8.1037 18 6 2.3498 1.1791 9.1326 19 1 2.9872 1.9924 8.8187 20 6 2.1251 0.9579 10.4749 21 7 1.3494 -0.0328 10.8573 22 14 2.9227 2.0655 11.7503 23 1 2.4768 3.4660 11.5379 24 1 2.5260 1.6200 13.1103 25 1 4.3998 1.9906 11.6167 26 7 1.2141 1.2039 3.5014 27 6 -0.0077 1.9384 3.8386 28 6 -1.2283 1.0768 3.5090 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 5.2852 2.2119 0.4274 35 1 3.9785 2.7469 2.5832 36 1 4.3446 4.1190 1.5119 37 1 1.9098 3.9465 2.2276 38 1 2.1672 3.9779 0.4639 39 1 0.3791 -0.1081 5.7555 40 1 1.7899 -1.1917 5.8144 41 1 3.2007 0.6879 6.6050 42 1 1.7898 1.7716 6.5463 43 1 0.6227 0.3404 8.2016 44 1 2.0338 -0.7428 8.2598 45 1 1.1916 -0.1886 11.8016 46 1 -0.0071 2.1758 4.9024 47 1 -0.0479 2.8616 3.2605 48 1 -1.2335 0.1943 4.1487 49 1 -2.1371 1.6541 3.6789 50 1 -1.1839 0.7682 2.4645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263018506.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:46 Heat of formation + Delta-G solvation = 23.417809 kcal Electronic energy + Delta-G solvation = -30791.538304 eV Core-core repulsion = 26854.225888 eV Total energy + Delta-G solvation = -3937.312416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.24879 -41.74136 -38.62935 -36.99339 -36.43487 -36.17417 -34.42756 -33.64094 -31.53746 -31.32715 -30.17771 -28.83983 -27.40453 -25.83881 -24.88827 -24.59333 -22.99589 -22.53860 -22.27744 -21.49716 -20.30085 -18.54279 -18.46449 -18.34570 -17.67238 -17.22029 -16.78346 -16.55299 -16.35064 -15.97744 -15.82871 -15.55980 -15.21352 -14.94666 -14.68574 -14.34298 -14.14343 -14.07359 -13.79667 -13.72045 -13.45383 -13.32029 -13.15102 -12.86999 -12.82813 -12.66291 -12.62480 -12.51189 -12.33744 -12.31569 -12.15162 -11.95651 -11.70187 -11.54627 -11.41982 -11.26892 -11.19075 -11.05399 -10.52830 -10.26739 -10.14853 -9.55756 -8.18382 -6.28642 0.69775 1.15425 1.41177 1.43601 1.51279 1.52338 1.74538 2.13069 2.42183 2.60745 3.15317 3.32604 3.34235 3.54694 3.66037 3.72789 3.82240 3.95679 4.07761 4.10551 4.16286 4.31640 4.34017 4.40030 4.42798 4.46378 4.51853 4.55500 4.61204 4.70511 4.74363 4.76705 4.88187 5.01947 5.05000 5.05576 5.10747 5.17477 5.18082 5.20489 5.33387 5.44614 5.51886 5.53059 5.74114 5.75286 5.86790 6.14027 6.22223 6.26597 6.87438 7.10577 7.40268 7.71136 8.92856 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017512 B = 0.002849 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.489965 B = 9824.292045 C =10428.865975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C 0.094 3.906 4 H 0.161 0.839 5 C 0.504 3.496 6 O -0.594 6.594 7 N -0.707 5.707 8 C 0.077 3.923 9 C 0.037 3.963 10 N -0.430 5.430 11 C 0.345 3.655 12 N -0.338 5.338 13 N -0.332 5.332 14 C 0.200 3.800 15 C -0.024 4.024 16 C -0.081 4.081 17 C 0.028 3.972 18 C -0.543 4.543 19 H 0.056 0.944 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.959 3.041 23 H -0.264 1.264 24 H -0.283 1.283 25 H -0.273 1.273 26 N -0.454 5.454 27 C 0.097 3.903 28 C -0.166 4.166 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.401 0.599 35 H 0.038 0.962 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.139 0.861 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.038 0.962 42 H 0.057 0.943 43 H 0.006 0.994 44 H -0.007 1.007 45 H 0.264 0.736 46 H 0.098 0.902 47 H 0.125 0.875 48 H 0.050 0.950 49 H 0.104 0.896 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.679 11.725 -22.971 26.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C -0.016 4.016 4 H 0.178 0.822 5 C 0.290 3.710 6 O -0.474 6.474 7 N -0.357 5.357 8 C -0.049 4.049 9 C -0.090 4.090 10 N -0.155 5.155 11 C -0.012 4.012 12 N -0.182 5.182 13 N -0.172 5.172 14 C -0.069 4.069 15 C -0.064 4.064 16 C -0.120 4.120 17 C -0.009 4.009 18 C -0.581 4.581 19 H 0.074 0.926 20 C -0.194 4.194 21 N -0.570 5.570 22 Si 0.783 3.217 23 H -0.188 1.188 24 H -0.209 1.209 25 H -0.198 1.198 26 N -0.147 5.147 27 C -0.024 4.024 28 C -0.223 4.223 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.236 0.764 35 H 0.056 0.944 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.157 0.843 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.025 0.975 44 H 0.011 0.989 45 H 0.072 0.928 46 H 0.117 0.883 47 H 0.144 0.856 48 H 0.069 0.931 49 H 0.122 0.878 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.020 10.635 -23.533 26.517 hybrid contribution 0.868 0.381 1.478 1.756 sum -5.152 11.017 -22.055 25.186 Atomic orbital electron populations 1.21702 0.92467 1.01897 1.03271 1.21607 0.98300 0.93133 1.02526 1.21988 0.88944 0.98375 0.92331 0.82225 1.21100 0.91791 0.78622 0.79509 1.90705 1.76356 1.40763 1.39621 1.45399 1.10838 1.40782 1.38684 1.22167 0.97603 0.94555 0.90540 1.23045 0.89647 0.88336 1.07946 1.59546 1.56181 1.02745 0.97063 1.22382 0.90409 0.99883 0.88515 1.74580 1.19051 1.11735 1.12808 1.73998 1.18602 1.23557 1.01018 1.24987 0.92257 0.92553 0.97061 1.20118 1.01946 1.00611 0.83719 1.21319 0.98853 0.97990 0.93865 1.18972 0.95672 0.95123 0.91174 1.21625 1.29489 1.14841 0.92180 0.92575 1.25886 0.95774 0.96828 1.00955 1.70062 1.38814 1.31507 1.16643 0.85602 0.78900 0.79407 0.77754 1.18848 1.20887 1.19777 1.46476 1.22878 1.32437 1.12888 1.22263 0.80251 0.96078 1.03806 1.22190 0.97268 1.00432 1.02425 0.93027 0.91987 0.90185 0.90936 0.93627 0.76379 0.94399 0.86129 0.86003 0.84336 0.88258 0.89529 0.94275 0.92419 0.97546 0.98909 0.92756 0.88337 0.85644 0.93111 0.87777 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.78 71.98 0.70 -1.51 16 2 C -0.12 -2.66 4.81 30.59 0.15 -2.51 16 3 C 0.09 1.75 2.36 44.03 0.10 1.86 16 4 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 5 C 0.50 12.55 6.08 87.68 0.53 13.08 16 6 O -0.59 -19.95 16.97 -3.03 -0.05 -20.00 16 7 N -0.71 -14.45 5.23 -466.10 -2.44 -16.89 16 8 C 0.08 1.12 6.46 86.47 0.56 1.68 16 9 C 0.04 0.36 6.02 86.24 0.52 0.88 16 10 N -0.43 -6.87 4.40 -686.34 -3.02 -9.90 16 11 C 0.34 8.31 4.12 260.11 1.07 9.38 16 12 N -0.34 -11.09 7.97 -58.01 -0.46 -11.55 16 13 N -0.33 -12.30 12.18 -49.54 -0.60 -12.90 16 14 C 0.20 6.26 7.32 137.64 1.01 7.26 16 15 C -0.02 -0.78 5.53 29.85 0.17 -0.61 16 16 C -0.08 -3.17 5.13 30.60 0.16 -3.01 16 17 C 0.03 1.38 4.97 29.85 0.15 1.53 16 18 C -0.54 -29.97 9.11 25.60 0.23 -29.73 16 19 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 20 C 0.00 0.21 5.46 84.66 0.46 0.67 16 21 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 22 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 26 N -0.45 -10.67 2.81 -514.87 -1.45 -12.11 16 27 C 0.10 1.48 6.57 86.38 0.57 2.05 16 28 C -0.17 -2.22 10.24 71.98 0.74 -1.48 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.01 5.24 -2.38 -0.01 0.99 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.80 7.64 -2.38 -0.02 1.78 16 33 H 0.05 1.39 5.59 -2.38 -0.01 1.38 16 34 H 0.40 8.08 8.84 -92.71 -0.82 7.26 16 35 H 0.04 0.84 7.05 -2.39 -0.02 0.82 16 36 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.14 0.49 8.08 -2.39 -0.02 0.47 16 39 H 0.10 2.74 7.59 -2.39 -0.02 2.73 16 40 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 44 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 46 H 0.10 1.60 8.07 -2.38 -0.02 1.58 16 47 H 0.13 1.21 8.10 -2.39 -0.02 1.19 16 48 H 0.05 0.85 7.75 -2.39 -0.02 0.83 16 49 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.06 0.92 5.86 -2.39 -0.01 0.90 16 Total: -1.00 -79.03 393.11 1.53 -77.50 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.12 Total: 15.85 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 7.12 Total: -0.47 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -7.69 Total: -118.12 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.05 Total: -20.00 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -79.03 1.53 -77.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263018506.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.919 kcal (2) G-P(sol) polarization free energy of solvation -79.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds