Wall clock time and date at job start Tue Mar 31 2020 18:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46769 * 2 1 4 4 N 1.46500 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.34817 * 126.59004 * 124.99871 * 4 3 2 6 6 C 1.36598 * 106.83651 * 179.97438 * 5 4 3 7 7 C 1.47527 * 125.76910 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00046 * 6.24018 * 7 6 5 9 9 N 1.34776 * 120.00159 * 186.23833 * 7 6 5 10 10 C 1.46935 * 120.62825 * 355.40431 * 9 7 6 11 11 C 1.53186 * 108.77648 * 126.41505 * 10 9 7 12 12 C 1.53033 * 109.34049 * 54.61651 * 11 10 9 13 13 C 1.53038 * 109.54220 * 298.68242 * 12 11 10 14 14 C 1.46925 * 120.63409 * 175.42298 * 9 7 6 15 15 H 1.08999 * 109.58390 * 113.65871 * 14 9 7 16 16 C 1.53003 * 109.58596 * 353.37670 * 14 9 7 17 17 H 1.08999 * 109.46671 * 313.71696 * 16 14 9 18 18 C 1.52996 * 109.46888 * 193.71380 * 16 14 9 19 19 N 1.46498 * 109.46933 * 73.71185 * 16 14 9 20 20 C 1.36947 * 119.99782 * 196.58492 * 19 16 14 21 21 H 1.07999 * 119.99716 * 359.97438 * 20 19 16 22 22 C 1.38807 * 119.99981 * 180.02562 * 20 19 16 23 23 N 1.31623 * 119.99978 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99845 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47275 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47123 * 120.00187 * 24 22 20 27 27 H 1.48500 * 109.47201 * 240.00159 * 24 22 20 28 28 N 1.34396 * 108.46017 * 0.24535 * 6 5 4 29 29 N 1.28760 * 109.52177 * 359.58579 * 28 6 5 30 30 H 1.09000 * 109.47069 * 60.00743 * 1 2 3 31 31 H 1.09006 * 109.46419 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47647 * 299.99861 * 1 2 3 33 33 H 1.08998 * 109.47647 * 240.00139 * 2 1 3 34 34 H 1.09000 * 109.47069 * 119.99257 * 2 1 3 35 35 H 1.08998 * 109.46922 * 59.99696 * 3 2 1 36 36 H 1.09000 * 109.46719 * 299.99472 * 3 2 1 37 37 H 1.07996 * 126.58284 * 359.94288 * 5 4 3 38 38 H 1.08995 * 109.58416 * 6.62417 * 10 9 7 39 39 H 1.09000 * 109.58142 * 246.20335 * 10 9 7 40 40 H 1.08996 * 109.49666 * 174.58528 * 11 10 9 41 41 H 1.09005 * 109.49519 * 294.64873 * 11 10 9 42 42 H 1.09000 * 109.46198 * 58.67004 * 12 11 10 43 43 H 1.09004 * 109.46308 * 178.63569 * 12 11 10 44 44 H 1.08999 * 109.47578 * 301.36646 * 13 12 11 45 45 H 1.08996 * 109.50205 * 181.28360 * 13 12 11 46 46 H 1.08996 * 109.47311 * 299.99368 * 18 16 14 47 47 H 1.08997 * 109.47071 * 60.00170 * 18 16 14 48 48 H 1.09001 * 109.46448 * 179.97438 * 18 16 14 49 49 H 0.96994 * 120.00641 * 16.57784 * 19 16 14 50 50 H 0.97001 * 119.99882 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3089 2.0634 -0.8859 6 6 5.5944 1.7992 -0.5068 7 6 6.8108 2.2778 -1.1906 8 8 6.7197 3.0631 -2.1144 9 7 8.0230 1.8447 -0.7913 10 6 8.1570 0.9755 0.3857 11 6 8.9439 -0.2768 -0.0132 12 6 10.2756 0.1402 -0.6414 13 6 10.0104 0.9666 -1.9019 14 6 9.2356 2.2331 -1.5245 15 1 9.8562 2.8691 -0.8933 16 6 8.8461 2.9935 -2.7937 17 1 8.0445 2.4605 -3.3050 18 6 10.0604 3.0977 -3.7186 19 7 8.3878 4.3382 -2.4360 20 6 7.6755 5.0816 -3.3390 21 1 7.4519 4.6767 -4.3149 22 6 7.2417 6.3559 -3.0003 23 7 7.5146 6.8496 -1.8110 24 14 6.2694 7.3696 -4.2317 25 1 6.0968 6.5930 -5.4856 26 1 4.9369 7.6948 -3.6628 27 1 7.0023 8.6272 -4.5260 28 7 5.5636 1.0245 0.5910 29 7 4.3405 0.7976 0.9234 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.9966 2.6554 -1.7334 38 1 7.1679 0.6876 0.7418 39 1 8.6908 1.5071 1.1735 40 1 9.1336 -0.8844 0.8716 41 1 8.3665 -0.8549 -0.7346 42 1 10.8422 0.7386 0.0720 43 1 10.8478 -0.7497 -0.9040 44 1 9.4232 0.3772 -2.6060 45 1 10.9591 1.2439 -2.3614 46 1 10.8619 3.6307 -3.2073 47 1 10.4013 2.0972 -3.9847 48 1 9.7827 3.6391 -4.6230 49 1 8.5888 4.7021 -1.5596 50 1 7.2112 7.7400 -1.5742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266005655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:59 Heat of formation + Delta-G solvation = 119.329114 kcal Electronic energy + Delta-G solvation = -30860.636059 eV Core-core repulsion = 26927.482670 eV Total energy + Delta-G solvation = -3933.153390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.06285 -39.77412 -36.74456 -36.19635 -35.05278 -32.95402 -32.21645 -32.10065 -30.46784 -29.72255 -27.71772 -27.23984 -25.18434 -24.12648 -23.07900 -22.89760 -22.26788 -21.50450 -20.44537 -19.80624 -19.05829 -17.37555 -16.57322 -16.20749 -15.87088 -15.51702 -15.25044 -14.82951 -14.70365 -14.35627 -13.99128 -13.82730 -13.67628 -13.44865 -13.33957 -13.01427 -12.94192 -12.58546 -12.48911 -12.34141 -12.06119 -12.05767 -11.89798 -11.71868 -11.49864 -11.19687 -11.15766 -11.03368 -10.70702 -10.61931 -10.53263 -10.45938 -10.26395 -10.07231 -9.71692 -9.52066 -9.37601 -9.03357 -8.55491 -8.38183 -7.82616 -6.44117 -5.44044 -2.64256 1.32458 2.07256 2.10212 3.53651 3.57430 3.62931 3.65260 4.00334 4.13992 4.38500 4.45382 4.67495 4.82712 4.85664 4.92455 5.01202 5.09490 5.14013 5.19283 5.22277 5.28676 5.41921 5.43753 5.55352 5.58741 5.67836 5.69929 5.79861 5.82286 5.88050 5.92200 6.02574 6.07945 6.20101 6.23722 6.26743 6.32387 6.45822 6.47064 6.54958 6.61472 6.70469 6.89325 7.09996 7.15232 7.49789 7.99300 8.03438 8.21603 8.72984 9.05718 9.84626 10.43538 10.79185 11.80595 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008243 B = 0.004876 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3395.914521 B = 5741.128283 C = 8531.247595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.122 3.878 4 N -0.362 5.362 5 C 0.087 3.913 6 C -0.077 4.077 7 C 0.559 3.441 8 O -0.434 6.434 9 N -0.599 5.599 10 C 0.071 3.929 11 C -0.129 4.129 12 C -0.120 4.120 13 C -0.126 4.126 14 C 0.147 3.853 15 H 0.066 0.934 16 C 0.180 3.820 17 H 0.061 0.939 18 C -0.169 4.169 19 N -0.692 5.692 20 C -0.176 4.176 21 H 0.063 0.937 22 C -0.029 4.029 23 N -0.944 5.944 24 Si 0.895 3.105 25 H -0.285 1.285 26 H -0.299 1.299 27 H -0.298 1.298 28 N -0.214 5.214 29 N -0.080 5.080 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.203 0.797 38 H 0.140 0.860 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.037 0.963 48 H 0.053 0.947 49 H 0.377 0.623 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -17.696 4.839 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.000 4.000 4 N -0.148 5.148 5 C -0.068 4.068 6 C -0.217 4.217 7 C 0.342 3.658 8 O -0.300 6.300 9 N -0.334 5.334 10 C -0.053 4.053 11 C -0.167 4.167 12 C -0.158 4.158 13 C -0.165 4.165 14 C 0.044 3.956 15 H 0.084 0.916 16 C 0.070 3.930 17 H 0.078 0.922 18 C -0.230 4.230 19 N -0.332 5.332 20 C -0.308 4.308 21 H 0.081 0.919 22 C -0.222 4.222 23 N -0.597 5.597 24 Si 0.729 3.271 25 H -0.210 1.210 26 H -0.227 1.227 27 H -0.226 1.226 28 N -0.086 5.086 29 N -0.058 5.058 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.220 0.780 38 H 0.157 0.843 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.211 0.789 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.536 -18.036 5.381 20.275 hybrid contribution -0.640 1.445 -1.025 1.884 sum -8.176 -16.591 4.356 19.003 Atomic orbital electron populations 1.21706 0.94039 1.02671 1.02370 1.21819 0.96778 0.94805 1.04073 1.22099 0.73018 0.99736 1.05103 1.50407 1.08451 1.35779 1.20198 1.23409 0.90222 0.96961 0.96250 1.22000 0.95503 1.06092 0.98070 1.17063 0.81365 0.82111 0.85302 1.91364 1.84421 1.27958 1.26273 1.47590 1.05372 1.50771 1.29714 1.22684 1.05318 0.90026 0.87283 1.21860 0.96471 0.97908 1.00504 1.21550 0.97162 0.99457 0.97617 1.22010 1.00501 0.96573 0.97443 1.21519 0.85100 0.94478 0.94516 0.91644 1.20426 0.93362 0.88094 0.91072 0.92179 1.22589 1.00032 0.99042 1.01299 1.42281 1.63144 1.11306 1.16504 1.19073 1.23102 0.94295 0.94376 0.91877 1.24538 1.03004 0.97970 0.96697 1.69664 1.53157 1.17067 1.19788 0.86230 0.79809 0.80455 0.80578 1.21020 1.22685 1.22635 1.74017 1.11634 1.11704 1.11265 1.81860 0.93968 1.17953 1.12066 0.92207 0.91789 0.92124 0.91100 0.90145 0.88569 0.87775 0.78001 0.84349 0.92763 0.91592 0.92149 0.92073 0.92417 0.91798 0.90679 0.93698 0.94377 0.92782 0.78920 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.14 -0.94 6.14 -26.73 -0.16 -1.10 16 3 C 0.12 0.95 6.54 -4.04 -0.03 0.92 16 4 N -0.36 -4.48 3.69 -61.06 -0.23 -4.71 16 5 C 0.09 1.27 11.28 -16.83 -0.19 1.08 16 6 C -0.08 -1.33 6.77 -83.55 -0.57 -1.90 16 7 C 0.56 11.12 7.43 -12.47 -0.09 11.02 16 8 O -0.43 -10.19 9.75 5.29 0.05 -10.14 16 9 N -0.60 -10.63 2.97 -166.44 -0.49 -11.12 16 10 C 0.07 1.06 6.32 -3.71 -0.02 1.04 16 11 C -0.13 -1.60 6.08 -26.62 -0.16 -1.76 16 12 C -0.12 -1.44 5.89 -26.69 -0.16 -1.60 16 13 C -0.13 -1.77 4.38 -26.61 -0.12 -1.89 16 14 C 0.15 2.61 2.64 -67.60 -0.18 2.43 16 15 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 16 C 0.18 3.77 1.84 -67.93 -0.12 3.65 16 17 H 0.06 1.37 6.29 -51.93 -0.33 1.04 16 18 C -0.17 -3.18 8.64 37.16 0.32 -2.86 16 19 N -0.69 -17.94 3.34 -53.43 -0.18 -18.12 16 20 C -0.18 -5.05 8.21 -15.06 -0.12 -5.17 16 21 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.03 -0.86 5.50 -17.43 -0.10 -0.96 16 23 N -0.94 -29.84 13.06 55.49 0.72 -29.11 16 24 Si 0.90 23.50 29.55 -169.99 -5.02 18.47 16 25 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 27 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 28 N -0.21 -3.46 8.63 32.85 0.28 -3.18 16 29 N -0.08 -1.17 13.65 60.35 0.82 -0.35 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 37 H 0.20 2.62 8.06 -52.49 -0.42 2.20 16 38 H 0.14 2.14 3.60 -131.53 -0.47 1.67 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 0.98 6.71 -51.93 -0.35 0.63 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.04 0.59 6.45 -51.93 -0.33 0.26 16 48 H 0.05 1.10 8.07 -51.93 -0.42 0.68 16 49 H 0.38 10.69 7.69 -40.82 -0.31 10.37 16 50 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 388.53 15.07 5.86 5.86 Total: -1.00 -34.62 388.53 -8.04 -42.66 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.52 Total: 7.21 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.33 Total: 2.53 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: 0.93 Total: -66.58 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.05 Total: -10.14 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.02 Total: 18.47 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.62 -8.04 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266005655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.988 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds