Wall clock time and date at job start Tue Mar 31 2020 18:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46769 * 2 1 4 4 N 1.46500 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.34817 * 126.59004 * 124.99871 * 4 3 2 6 6 C 1.36598 * 106.83651 * 179.97438 * 5 4 3 7 7 C 1.47527 * 125.76910 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00046 * 6.24018 * 7 6 5 9 9 N 1.34776 * 120.00159 * 186.23833 * 7 6 5 10 10 C 1.46935 * 120.62825 * 355.40431 * 9 7 6 11 11 C 1.53186 * 108.77648 * 126.41505 * 10 9 7 12 12 C 1.53033 * 109.34049 * 54.61651 * 11 10 9 13 13 C 1.53038 * 109.54220 * 298.68242 * 12 11 10 14 14 C 1.46925 * 120.63409 * 175.42298 * 9 7 6 15 15 H 1.08999 * 109.58390 * 113.65871 * 14 9 7 16 16 C 1.53003 * 109.58596 * 353.37670 * 14 9 7 17 17 H 1.08999 * 109.46671 * 313.71696 * 16 14 9 18 18 C 1.52996 * 109.46888 * 193.71380 * 16 14 9 19 19 N 1.46498 * 109.46933 * 73.71185 * 16 14 9 20 20 C 1.36947 * 119.99782 * 196.58492 * 19 16 14 21 21 H 1.07999 * 119.99716 * 359.97438 * 20 19 16 22 22 C 1.38807 * 119.99981 * 180.02562 * 20 19 16 23 23 N 1.31623 * 119.99978 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99845 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47275 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47123 * 120.00187 * 24 22 20 27 27 H 1.48500 * 109.47201 * 240.00159 * 24 22 20 28 28 N 1.34396 * 108.46017 * 0.24535 * 6 5 4 29 29 N 1.28760 * 109.52177 * 359.58579 * 28 6 5 30 30 H 1.09000 * 109.47069 * 60.00743 * 1 2 3 31 31 H 1.09006 * 109.46419 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47647 * 299.99861 * 1 2 3 33 33 H 1.08998 * 109.47647 * 240.00139 * 2 1 3 34 34 H 1.09000 * 109.47069 * 119.99257 * 2 1 3 35 35 H 1.08998 * 109.46922 * 59.99696 * 3 2 1 36 36 H 1.09000 * 109.46719 * 299.99472 * 3 2 1 37 37 H 1.07996 * 126.58284 * 359.94288 * 5 4 3 38 38 H 1.08995 * 109.58416 * 6.62417 * 10 9 7 39 39 H 1.09000 * 109.58142 * 246.20335 * 10 9 7 40 40 H 1.08996 * 109.49666 * 174.58528 * 11 10 9 41 41 H 1.09005 * 109.49519 * 294.64873 * 11 10 9 42 42 H 1.09000 * 109.46198 * 58.67004 * 12 11 10 43 43 H 1.09004 * 109.46308 * 178.63569 * 12 11 10 44 44 H 1.08999 * 109.47578 * 301.36646 * 13 12 11 45 45 H 1.08996 * 109.50205 * 181.28360 * 13 12 11 46 46 H 1.08996 * 109.47311 * 299.99368 * 18 16 14 47 47 H 1.08997 * 109.47071 * 60.00170 * 18 16 14 48 48 H 1.09001 * 109.46448 * 179.97438 * 18 16 14 49 49 H 0.96994 * 120.00641 * 16.57784 * 19 16 14 50 50 H 0.97001 * 119.99882 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3089 2.0634 -0.8859 6 6 5.5944 1.7992 -0.5068 7 6 6.8108 2.2778 -1.1906 8 8 6.7197 3.0631 -2.1144 9 7 8.0230 1.8447 -0.7913 10 6 8.1570 0.9755 0.3857 11 6 8.9439 -0.2768 -0.0132 12 6 10.2756 0.1402 -0.6414 13 6 10.0104 0.9666 -1.9019 14 6 9.2356 2.2331 -1.5245 15 1 9.8562 2.8691 -0.8933 16 6 8.8461 2.9935 -2.7937 17 1 8.0445 2.4605 -3.3050 18 6 10.0604 3.0977 -3.7186 19 7 8.3878 4.3382 -2.4360 20 6 7.6755 5.0816 -3.3390 21 1 7.4519 4.6767 -4.3149 22 6 7.2417 6.3559 -3.0003 23 7 7.5146 6.8496 -1.8110 24 14 6.2694 7.3696 -4.2317 25 1 6.0968 6.5930 -5.4856 26 1 4.9369 7.6948 -3.6628 27 1 7.0023 8.6272 -4.5260 28 7 5.5636 1.0245 0.5910 29 7 4.3405 0.7976 0.9234 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.9966 2.6554 -1.7334 38 1 7.1679 0.6876 0.7418 39 1 8.6908 1.5071 1.1735 40 1 9.1336 -0.8844 0.8716 41 1 8.3665 -0.8549 -0.7346 42 1 10.8422 0.7386 0.0720 43 1 10.8478 -0.7497 -0.9040 44 1 9.4232 0.3772 -2.6060 45 1 10.9591 1.2439 -2.3614 46 1 10.8619 3.6307 -3.2073 47 1 10.4013 2.0972 -3.9847 48 1 9.7827 3.6391 -4.6230 49 1 8.5888 4.7021 -1.5596 50 1 7.2112 7.7400 -1.5742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266005655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:59 Heat of formation + Delta-G solvation = 96.914592 kcal Electronic energy + Delta-G solvation = -30861.608026 eV Core-core repulsion = 26927.482670 eV Total energy + Delta-G solvation = -3934.125356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.24027 -41.19752 -38.12707 -37.15282 -36.63124 -34.23518 -33.77949 -33.32906 -31.70026 -31.41272 -29.33411 -28.04227 -26.59547 -25.87168 -24.31649 -24.04213 -23.55501 -22.40110 -21.68907 -21.25345 -20.39800 -18.96784 -18.18546 -17.20005 -17.09647 -16.91182 -16.64059 -16.11067 -15.87044 -15.70833 -15.45265 -15.20426 -14.95890 -14.75097 -14.52398 -14.41961 -14.11496 -13.83941 -13.65193 -13.54744 -13.44712 -13.11750 -12.95006 -12.90873 -12.78509 -12.69081 -12.52831 -12.35853 -12.22299 -12.03401 -11.77195 -11.71134 -11.65858 -11.50753 -11.25428 -11.19937 -10.82151 -10.72470 -10.23977 -9.93296 -9.30705 -8.53104 -7.70570 -4.88906 0.18793 0.76834 1.11842 1.47529 1.48877 1.58324 2.19250 2.54796 2.70720 3.23656 3.34944 3.62638 3.72843 3.81536 3.91839 3.93936 4.05244 4.14406 4.15470 4.20045 4.22643 4.35275 4.38836 4.44793 4.47283 4.55350 4.66576 4.68090 4.80247 4.81405 4.93961 4.98435 5.09210 5.09763 5.13022 5.13868 5.16136 5.22042 5.26939 5.31958 5.43411 5.45912 5.51601 5.55947 5.65618 5.69158 6.03702 6.49823 6.65717 6.96156 7.53112 7.60003 8.33995 8.58102 9.55333 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008243 B = 0.004876 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3395.914521 B = 5741.128283 C = 8531.247595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.109 3.891 4 N -0.345 5.345 5 C 0.093 3.907 6 C -0.106 4.106 7 C 0.555 3.445 8 O -0.485 6.485 9 N -0.599 5.599 10 C 0.066 3.934 11 C -0.122 4.122 12 C -0.115 4.115 13 C -0.119 4.119 14 C 0.149 3.851 15 H 0.052 0.948 16 C 0.180 3.820 17 H 0.042 0.958 18 C -0.159 4.159 19 N -0.699 5.699 20 C -0.159 4.159 21 H 0.059 0.941 22 C -0.094 4.094 23 N -0.983 5.983 24 Si 0.957 3.043 25 H -0.272 1.272 26 H -0.301 1.301 27 H -0.302 1.302 28 N -0.220 5.220 29 N -0.085 5.085 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.216 0.784 38 H 0.137 0.863 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.043 0.957 47 H 0.076 0.924 48 H 0.033 0.967 49 H 0.361 0.639 50 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.819 -19.843 4.707 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C -0.010 4.010 4 N -0.131 5.131 5 C -0.064 4.064 6 C -0.246 4.246 7 C 0.339 3.661 8 O -0.356 6.356 9 N -0.333 5.333 10 C -0.057 4.057 11 C -0.160 4.160 12 C -0.153 4.153 13 C -0.157 4.157 14 C 0.045 3.955 15 H 0.070 0.930 16 C 0.071 3.929 17 H 0.060 0.940 18 C -0.219 4.219 19 N -0.336 5.336 20 C -0.292 4.292 21 H 0.077 0.923 22 C -0.283 4.283 23 N -0.639 5.639 24 Si 0.790 3.210 25 H -0.197 1.197 26 H -0.230 1.230 27 H -0.231 1.231 28 N -0.092 5.092 29 N -0.064 5.064 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.148 0.852 37 H 0.232 0.768 38 H 0.154 0.846 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.062 0.938 47 H 0.095 0.905 48 H 0.052 0.948 49 H 0.192 0.808 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.014 -20.274 5.252 22.424 hybrid contribution -0.577 1.968 -0.926 2.250 sum -8.591 -18.306 4.327 20.679 Atomic orbital electron populations 1.21682 0.92225 1.03221 1.03169 1.21764 0.98166 0.93733 1.03144 1.22637 0.70203 1.01020 1.07156 1.50702 1.09819 1.33984 1.18596 1.23589 0.89780 0.96520 0.96544 1.21799 0.95509 1.08001 0.99294 1.17453 0.82540 0.81353 0.84746 1.91313 1.85367 1.30375 1.28553 1.47755 1.04894 1.50472 1.30201 1.22856 1.05872 0.90778 0.86235 1.21820 0.96161 0.96502 1.01523 1.21540 0.97154 1.00164 0.96423 1.21964 1.00306 0.94703 0.98740 1.21471 0.85325 0.95983 0.92691 0.92956 1.20525 0.93381 0.85965 0.92984 0.93989 1.22439 0.98807 1.01021 0.99632 1.42387 1.63016 1.12978 1.15244 1.19274 1.21457 0.94180 0.94269 0.92310 1.25194 1.05254 0.99408 0.98481 1.69833 1.55273 1.17022 1.21758 0.85239 0.78082 0.78713 0.79007 1.19664 1.22964 1.23068 1.73995 1.12411 1.11820 1.11014 1.81768 0.93882 1.18186 1.12603 0.91315 0.91405 0.91420 0.91808 0.91324 0.87043 0.85232 0.76770 0.84628 0.92905 0.89110 0.92473 0.91780 0.89648 0.91800 0.89195 0.93770 0.90547 0.94828 0.80777 0.95271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 71.98 0.71 -0.39 16 2 C -0.13 -1.56 6.14 30.60 0.19 -1.37 16 3 C 0.11 1.48 6.54 86.38 0.56 2.05 16 4 N -0.34 -8.19 3.69 -347.09 -1.28 -9.47 16 5 C 0.09 2.68 11.28 83.85 0.95 3.62 16 6 C -0.11 -3.73 6.77 40.82 0.28 -3.45 16 7 C 0.55 22.74 7.43 86.69 0.64 23.38 16 8 O -0.49 -23.72 9.75 -4.00 -0.04 -23.75 16 9 N -0.60 -21.47 2.97 -798.76 -2.37 -23.84 16 10 C 0.07 1.92 6.32 86.36 0.55 2.47 16 11 C -0.12 -2.72 6.08 30.67 0.19 -2.54 16 12 C -0.12 -2.41 5.89 30.62 0.18 -2.23 16 13 C -0.12 -3.05 4.38 30.67 0.13 -2.92 16 14 C 0.15 5.24 2.64 44.98 0.12 5.36 16 15 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 16 C 0.18 7.63 1.84 44.99 0.08 7.71 16 17 H 0.04 1.97 6.29 -2.39 -0.02 1.95 16 18 C -0.16 -5.88 8.64 71.98 0.62 -5.26 16 19 N -0.70 -37.39 3.34 -322.94 -1.08 -38.47 16 20 C -0.16 -9.33 8.21 84.03 0.69 -8.64 16 21 H 0.06 3.45 7.83 -2.91 -0.02 3.42 16 22 C -0.09 -5.75 5.50 84.86 0.47 -5.28 16 23 N -0.98 -64.19 13.06 21.65 0.28 -63.91 16 24 Si 0.96 49.50 29.55 68.60 2.03 51.53 16 25 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.30 -15.57 7.11 99.48 0.71 -14.86 16 27 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 28 N -0.22 -7.11 8.63 -49.99 -0.43 -7.54 16 29 N -0.09 -2.45 13.65 37.02 0.51 -1.94 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.13 1.16 8.08 -2.39 -0.02 1.14 16 37 H 0.22 5.54 8.06 -2.91 -0.02 5.51 16 38 H 0.14 4.16 3.60 -105.39 -0.38 3.78 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.09 2.06 6.71 -2.39 -0.02 2.05 16 46 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.08 2.22 6.45 -2.39 -0.02 2.20 16 48 H 0.03 1.35 8.07 -2.39 -0.02 1.33 16 49 H 0.36 21.35 7.69 -92.71 -0.71 20.63 16 50 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -77.90 388.53 3.82 -74.08 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: -0.14 Total: 30.81 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 6.36 Total: 12.52 kcal Atomic # 7 Polarization: -140.81 SS G_CDS: -4.38 Total: -145.19 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.04 Total: -23.75 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.03 Total: 51.53 kcal Total: -77.90 3.82 -74.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266005655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.995 kcal (2) G-P(sol) polarization free energy of solvation -77.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds