Wall clock time and date at job start Tue Mar 31 2020 18:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46768 * 2 1 4 4 N 1.46500 * 109.47088 * 180.02562 * 3 2 1 5 5 C 1.34811 * 126.59655 * 124.99612 * 4 3 2 6 6 C 1.36598 * 106.84141 * 179.97438 * 5 4 3 7 7 C 1.47524 * 125.76614 * 179.97438 * 6 5 4 8 8 O 1.21594 * 120.00684 * 356.88599 * 7 6 5 9 9 N 1.34785 * 119.99301 * 176.88971 * 7 6 5 10 10 C 1.46921 * 120.63203 * 5.94965 * 9 7 6 11 11 C 1.53194 * 108.77283 * 126.39092 * 10 9 7 12 12 C 1.53040 * 109.31194 * 54.63652 * 11 10 9 13 13 C 1.53041 * 109.53898 * 298.63158 * 12 11 10 14 14 C 1.46929 * 120.62410 * 185.94838 * 9 7 6 15 15 H 1.09004 * 109.70076 * 113.75469 * 14 9 7 16 16 C 1.52998 * 109.59014 * 353.39687 * 14 9 7 17 17 H 1.08998 * 109.46832 * 53.42824 * 16 14 9 18 18 C 1.52998 * 109.46798 * 173.42891 * 16 14 9 19 19 N 1.46502 * 109.47096 * 293.42803 * 16 14 9 20 20 C 1.36933 * 119.99510 * 155.00036 * 19 16 14 21 21 H 1.07996 * 120.00542 * 0.02562 * 20 19 16 22 22 C 1.38811 * 119.99616 * 179.72383 * 20 19 16 23 23 N 1.31627 * 119.99802 * 0.27756 * 22 20 19 24 24 Si 1.86802 * 120.00266 * 180.27427 * 22 20 19 25 25 H 1.48500 * 109.46685 * 60.00106 * 24 22 20 26 26 H 1.48498 * 109.47239 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46836 * 300.00337 * 24 22 20 28 28 N 1.34397 * 108.45780 * 0.24491 * 6 5 4 29 29 N 1.28759 * 109.52226 * 359.58586 * 28 6 5 30 30 H 1.09001 * 109.47133 * 299.99699 * 1 2 3 31 31 H 1.08996 * 109.47263 * 60.00028 * 1 2 3 32 32 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47133 * 240.00301 * 2 1 3 34 34 H 1.08996 * 109.47263 * 119.99971 * 2 1 3 35 35 H 1.09001 * 109.47048 * 60.00249 * 3 2 1 36 36 H 1.08996 * 109.47205 * 300.00007 * 3 2 1 37 37 H 1.08000 * 126.58155 * 359.95130 * 5 4 3 38 38 H 1.08994 * 109.58856 * 6.60561 * 10 9 7 39 39 H 1.08996 * 109.58572 * 246.17939 * 10 9 7 40 40 H 1.08998 * 109.50063 * 294.68154 * 11 10 9 41 41 H 1.09001 * 109.52549 * 174.59982 * 11 10 9 42 42 H 1.09007 * 109.46023 * 178.61607 * 12 11 10 43 43 H 1.08997 * 109.46030 * 58.65455 * 12 11 10 44 44 H 1.09004 * 109.49725 * 301.41698 * 13 12 11 45 45 H 1.08997 * 109.52537 * 181.33656 * 13 12 11 46 46 H 1.08993 * 109.47399 * 65.11816 * 18 16 14 47 47 H 1.09009 * 109.46931 * 185.11463 * 18 16 14 48 48 H 1.09008 * 109.47317 * 305.11180 * 18 16 14 49 49 H 0.96995 * 119.99662 * 335.00060 * 19 16 14 50 50 H 0.97002 * 119.99424 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.3082 2.0636 -0.8875 6 6 5.5940 1.7993 -0.5095 7 6 6.8097 2.2781 -1.1943 8 8 6.7154 2.9252 -2.2194 9 7 8.0253 1.9983 -0.6835 10 6 8.1624 1.1102 0.4789 11 6 9.1506 -0.0076 0.1315 12 6 10.4667 0.6106 -0.3459 13 6 10.2144 1.4412 -1.6063 14 6 9.2383 2.5755 -1.2787 15 1 9.7021 3.2642 -0.5726 16 6 8.8734 3.3249 -2.5617 17 1 8.0835 4.0453 -2.3495 18 6 10.1062 4.0606 -3.0906 19 7 8.4054 2.3695 -3.5690 20 6 7.5665 2.7846 -4.5686 21 1 7.2503 3.8162 -4.6147 22 6 7.1276 1.8807 -5.5263 23 7 7.5134 0.6235 -5.4703 24 14 5.9894 2.4484 -6.8943 25 1 6.6585 3.5124 -7.6852 26 1 5.6687 1.3003 -7.7799 27 1 4.7359 2.9838 -6.3051 28 7 5.5641 1.0243 0.5881 29 7 4.3412 0.7974 0.9214 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.9953 2.6560 -1.7346 38 1 7.1927 0.6774 0.7245 39 1 8.5376 1.6781 1.3303 40 1 8.7327 -0.6297 -0.6599 41 1 9.3352 -0.6184 1.0152 42 1 11.1801 -0.1824 -0.5705 43 1 10.8715 1.2521 0.4367 44 1 9.7864 0.8054 -2.3814 45 1 11.1558 1.8620 -1.9597 46 1 10.8628 3.3346 -3.3881 47 1 9.8258 4.6668 -3.9521 48 1 10.5083 4.7048 -2.3085 49 1 8.6897 1.4431 -3.5278 50 1 7.2064 -0.0082 -6.1394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266005656.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:04 Heat of formation + Delta-G solvation = 118.925251 kcal Electronic energy + Delta-G solvation = -31130.122386 eV Core-core repulsion = 27196.951483 eV Total energy + Delta-G solvation = -3933.170903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.04230 -39.77323 -36.69413 -36.15860 -35.01112 -32.86907 -32.12129 -32.04566 -30.44391 -29.46341 -27.94364 -27.24140 -25.10589 -23.75723 -23.26824 -23.02708 -22.29282 -21.52086 -20.39924 -19.86529 -18.67303 -17.16244 -16.82547 -16.20234 -15.79722 -15.48697 -15.24703 -14.76129 -14.48550 -14.29232 -13.99843 -13.82971 -13.71374 -13.52556 -13.35842 -12.99543 -12.81875 -12.52592 -12.39196 -12.16037 -12.01427 -11.99026 -11.80136 -11.67291 -11.44376 -11.23897 -11.09778 -10.94579 -10.64390 -10.53121 -10.43901 -10.39772 -10.24247 -10.01751 -9.81392 -9.51667 -9.28544 -9.00912 -8.59189 -8.26032 -7.76337 -6.50338 -5.43808 -2.65044 1.33983 2.09713 2.11152 3.54678 3.57970 3.62238 3.63514 4.02813 4.16649 4.42177 4.47856 4.71872 4.85159 4.88658 4.95476 5.05237 5.20141 5.23247 5.26261 5.30168 5.39173 5.46891 5.55667 5.62773 5.67019 5.73530 5.78482 5.85135 5.85693 5.92016 5.94562 6.03501 6.17662 6.30684 6.35016 6.41178 6.47677 6.49403 6.57823 6.59358 6.71365 6.73341 7.06341 7.11766 7.20157 7.53163 8.03198 8.05809 8.22976 8.74744 9.05681 9.85896 10.44934 10.81370 11.80835 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008712 B = 0.005047 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.210044 B = 5546.578381 C = 7850.420920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.123 3.877 4 N -0.362 5.362 5 C 0.089 3.911 6 C -0.078 4.078 7 C 0.576 3.424 8 O -0.449 6.449 9 N -0.596 5.596 10 C 0.078 3.922 11 C -0.132 4.132 12 C -0.117 4.117 13 C -0.132 4.132 14 C 0.147 3.853 15 H 0.062 0.938 16 C 0.169 3.831 17 H 0.081 0.919 18 C -0.169 4.169 19 N -0.702 5.702 20 C -0.171 4.171 21 H 0.064 0.936 22 C -0.032 4.032 23 N -0.948 5.948 24 Si 0.897 3.103 25 H -0.292 1.292 26 H -0.297 1.297 27 H -0.293 1.293 28 N -0.213 5.213 29 N -0.079 5.079 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.203 0.797 38 H 0.135 0.865 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.045 0.955 47 H 0.052 0.948 48 H 0.032 0.968 49 H 0.379 0.621 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.182 0.954 15.847 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.002 3.998 4 N -0.149 5.149 5 C -0.067 4.067 6 C -0.218 4.218 7 C 0.359 3.641 8 O -0.317 6.317 9 N -0.331 5.331 10 C -0.046 4.046 11 C -0.170 4.170 12 C -0.155 4.155 13 C -0.171 4.171 14 C 0.043 3.957 15 H 0.080 0.920 16 C 0.059 3.941 17 H 0.098 0.902 18 C -0.230 4.230 19 N -0.344 5.344 20 C -0.303 4.303 21 H 0.082 0.918 22 C -0.225 4.225 23 N -0.601 5.601 24 Si 0.730 3.270 25 H -0.220 1.220 26 H -0.224 1.224 27 H -0.221 1.221 28 N -0.085 5.085 29 N -0.058 5.058 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.220 0.780 38 H 0.152 0.848 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.051 0.949 49 H 0.214 0.786 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.394 0.554 16.388 17.987 hybrid contribution -0.654 0.349 -1.692 1.847 sum -8.049 0.903 14.696 16.780 Atomic orbital electron populations 1.21700 0.94047 1.02734 1.02226 1.21831 0.96765 0.94793 1.04295 1.22085 0.73003 0.99883 1.04857 1.50418 1.08470 1.35651 1.20338 1.23405 0.90250 0.97408 0.95609 1.21943 0.95417 1.06438 0.97961 1.16907 0.81251 0.82333 0.83585 1.91131 1.84729 1.37182 1.18689 1.47567 1.05125 1.48577 1.31822 1.22569 1.03845 0.91130 0.87039 1.21880 0.95927 0.98074 1.01160 1.21521 0.97051 0.99133 0.97774 1.21979 0.99202 0.97962 0.97944 1.21594 0.84274 0.94112 0.95709 0.92017 1.20704 0.93512 0.93038 0.86813 0.90169 1.22583 1.00200 1.00045 1.00167 1.42425 1.55300 1.07939 1.28686 1.19039 1.17222 0.93920 1.00145 0.91816 1.24548 1.02307 0.95774 0.99881 1.69639 1.50767 1.02237 1.37460 0.86380 0.81229 0.76691 0.82673 1.21954 1.22384 1.22079 1.74129 1.11699 1.11225 1.11461 1.81863 0.93931 1.17727 1.12311 0.92239 0.92202 0.91748 0.90864 0.90139 0.88672 0.87825 0.78013 0.84820 0.93016 0.91547 0.91721 0.92422 0.92596 0.90161 0.91277 0.93580 0.92937 0.94932 0.78564 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.14 -1.09 6.14 -26.73 -0.16 -1.26 16 3 C 0.12 0.98 6.54 -4.04 -0.03 0.96 16 4 N -0.36 -4.57 3.69 -61.06 -0.23 -4.80 16 5 C 0.09 1.31 11.27 -16.84 -0.19 1.12 16 6 C -0.08 -1.37 6.77 -83.55 -0.57 -1.93 16 7 C 0.58 11.51 7.40 -12.47 -0.09 11.41 16 8 O -0.45 -10.37 9.60 5.28 0.05 -10.32 16 9 N -0.60 -10.72 2.97 -166.44 -0.49 -11.22 16 10 C 0.08 1.20 6.21 -3.71 -0.02 1.18 16 11 C -0.13 -1.91 6.08 -26.61 -0.16 -2.07 16 12 C -0.12 -1.64 5.88 -26.69 -0.16 -1.80 16 13 C -0.13 -2.23 4.88 -26.61 -0.13 -2.36 16 14 C 0.15 2.60 2.72 -67.60 -0.18 2.42 16 15 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 16 C 0.17 3.54 1.88 -67.93 -0.13 3.41 16 17 H 0.08 1.82 5.88 -52.24 -0.31 1.51 16 18 C -0.17 -3.20 9.17 37.16 0.34 -2.86 16 19 N -0.70 -17.87 3.64 -53.43 -0.19 -18.06 16 20 C -0.17 -4.87 7.98 -15.06 -0.12 -4.99 16 21 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.03 -0.96 5.50 -17.43 -0.10 -1.06 16 23 N -0.95 -29.72 13.06 55.49 0.72 -29.00 16 24 Si 0.90 23.48 29.55 -169.99 -5.02 18.46 16 25 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 26 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 27 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 28 N -0.21 -3.51 8.64 32.85 0.28 -3.22 16 29 N -0.08 -1.19 13.65 60.35 0.82 -0.37 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 37 H 0.20 2.64 8.06 -52.49 -0.42 2.22 16 38 H 0.14 2.16 3.79 -117.00 -0.44 1.71 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.65 6.01 -51.93 -0.31 1.33 16 45 H 0.07 1.10 7.05 -51.93 -0.37 0.73 16 46 H 0.05 0.87 7.03 -51.93 -0.36 0.50 16 47 H 0.05 1.06 8.14 -51.92 -0.42 0.63 16 48 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 49 H 0.38 10.37 5.57 -40.82 -0.23 10.14 16 50 H 0.25 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -34.19 386.06 -7.89 -42.09 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -8.33 Total: 8.92 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.33 Total: 1.70 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: 0.92 Total: -66.67 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.05 Total: -10.32 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.02 Total: 18.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.19 -7.89 -42.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266005656.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.011 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds