Wall clock time and date at job start Tue Mar 31 2020 18:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46768 * 2 1 4 4 N 1.46500 * 109.47088 * 180.02562 * 3 2 1 5 5 C 1.34811 * 126.59655 * 124.99612 * 4 3 2 6 6 C 1.36598 * 106.84141 * 179.97438 * 5 4 3 7 7 C 1.47524 * 125.76614 * 179.97438 * 6 5 4 8 8 O 1.21594 * 120.00684 * 356.88599 * 7 6 5 9 9 N 1.34785 * 119.99301 * 176.88971 * 7 6 5 10 10 C 1.46921 * 120.63203 * 5.94965 * 9 7 6 11 11 C 1.53194 * 108.77283 * 126.39092 * 10 9 7 12 12 C 1.53040 * 109.31194 * 54.63652 * 11 10 9 13 13 C 1.53041 * 109.53898 * 298.63158 * 12 11 10 14 14 C 1.46929 * 120.62410 * 185.94838 * 9 7 6 15 15 H 1.09004 * 109.70076 * 113.75469 * 14 9 7 16 16 C 1.52998 * 109.59014 * 353.39687 * 14 9 7 17 17 H 1.08998 * 109.46832 * 53.42824 * 16 14 9 18 18 C 1.52998 * 109.46798 * 173.42891 * 16 14 9 19 19 N 1.46502 * 109.47096 * 293.42803 * 16 14 9 20 20 C 1.36933 * 119.99510 * 155.00036 * 19 16 14 21 21 H 1.07996 * 120.00542 * 0.02562 * 20 19 16 22 22 C 1.38811 * 119.99616 * 179.72383 * 20 19 16 23 23 N 1.31627 * 119.99802 * 0.27756 * 22 20 19 24 24 Si 1.86802 * 120.00266 * 180.27427 * 22 20 19 25 25 H 1.48500 * 109.46685 * 60.00106 * 24 22 20 26 26 H 1.48498 * 109.47239 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46836 * 300.00337 * 24 22 20 28 28 N 1.34397 * 108.45780 * 0.24491 * 6 5 4 29 29 N 1.28759 * 109.52226 * 359.58586 * 28 6 5 30 30 H 1.09001 * 109.47133 * 299.99699 * 1 2 3 31 31 H 1.08996 * 109.47263 * 60.00028 * 1 2 3 32 32 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47133 * 240.00301 * 2 1 3 34 34 H 1.08996 * 109.47263 * 119.99971 * 2 1 3 35 35 H 1.09001 * 109.47048 * 60.00249 * 3 2 1 36 36 H 1.08996 * 109.47205 * 300.00007 * 3 2 1 37 37 H 1.08000 * 126.58155 * 359.95130 * 5 4 3 38 38 H 1.08994 * 109.58856 * 6.60561 * 10 9 7 39 39 H 1.08996 * 109.58572 * 246.17939 * 10 9 7 40 40 H 1.08998 * 109.50063 * 294.68154 * 11 10 9 41 41 H 1.09001 * 109.52549 * 174.59982 * 11 10 9 42 42 H 1.09007 * 109.46023 * 178.61607 * 12 11 10 43 43 H 1.08997 * 109.46030 * 58.65455 * 12 11 10 44 44 H 1.09004 * 109.49725 * 301.41698 * 13 12 11 45 45 H 1.08997 * 109.52537 * 181.33656 * 13 12 11 46 46 H 1.08993 * 109.47399 * 65.11816 * 18 16 14 47 47 H 1.09009 * 109.46931 * 185.11463 * 18 16 14 48 48 H 1.09008 * 109.47317 * 305.11180 * 18 16 14 49 49 H 0.96995 * 119.99662 * 335.00060 * 19 16 14 50 50 H 0.97002 * 119.99424 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.3082 2.0636 -0.8875 6 6 5.5940 1.7993 -0.5095 7 6 6.8097 2.2781 -1.1943 8 8 6.7154 2.9252 -2.2194 9 7 8.0253 1.9983 -0.6835 10 6 8.1624 1.1102 0.4789 11 6 9.1506 -0.0076 0.1315 12 6 10.4667 0.6106 -0.3459 13 6 10.2144 1.4412 -1.6063 14 6 9.2383 2.5755 -1.2787 15 1 9.7021 3.2642 -0.5726 16 6 8.8734 3.3249 -2.5617 17 1 8.0835 4.0453 -2.3495 18 6 10.1062 4.0606 -3.0906 19 7 8.4054 2.3695 -3.5690 20 6 7.5665 2.7846 -4.5686 21 1 7.2503 3.8162 -4.6147 22 6 7.1276 1.8807 -5.5263 23 7 7.5134 0.6235 -5.4703 24 14 5.9894 2.4484 -6.8943 25 1 6.6585 3.5124 -7.6852 26 1 5.6687 1.3003 -7.7799 27 1 4.7359 2.9838 -6.3051 28 7 5.5641 1.0243 0.5881 29 7 4.3412 0.7974 0.9214 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.9953 2.6560 -1.7346 38 1 7.1927 0.6774 0.7245 39 1 8.5376 1.6781 1.3303 40 1 8.7327 -0.6297 -0.6599 41 1 9.3352 -0.6184 1.0152 42 1 11.1801 -0.1824 -0.5705 43 1 10.8715 1.2521 0.4367 44 1 9.7864 0.8054 -2.3814 45 1 11.1558 1.8620 -1.9597 46 1 10.8628 3.3346 -3.3881 47 1 9.8258 4.6668 -3.9521 48 1 10.5083 4.7048 -2.3085 49 1 8.6897 1.4431 -3.5278 50 1 7.2064 -0.0082 -6.1394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266005656.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:03 Heat of formation + Delta-G solvation = 96.876930 kcal Electronic energy + Delta-G solvation = -31131.078473 eV Core-core repulsion = 27196.951483 eV Total energy + Delta-G solvation = -3934.126989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.22369 -41.21943 -38.12782 -37.13029 -36.58833 -34.12377 -33.80802 -33.32364 -31.68999 -31.14284 -29.64837 -28.04357 -26.47489 -25.67036 -24.71148 -24.03853 -23.55861 -22.46070 -21.62367 -21.37052 -20.00067 -19.02251 -18.24586 -17.25915 -17.03395 -16.89940 -16.39228 -16.19322 -15.83433 -15.68079 -15.62285 -15.30773 -14.98512 -14.84774 -14.47906 -14.35453 -13.99299 -13.82804 -13.67696 -13.45998 -13.26560 -13.11365 -12.99919 -12.94249 -12.74628 -12.61969 -12.54027 -12.35631 -12.26895 -12.11879 -11.78956 -11.77259 -11.66965 -11.39537 -11.24622 -11.23647 -10.83930 -10.74538 -10.20602 -9.80797 -9.26842 -8.56113 -7.69703 -4.88616 0.19561 0.77837 1.13365 1.46629 1.50018 1.55517 2.19432 2.58459 2.71689 3.24708 3.35178 3.63558 3.74518 3.81466 3.95994 4.01686 4.06455 4.13426 4.14940 4.19163 4.21789 4.34612 4.39959 4.44693 4.49565 4.53425 4.65738 4.69841 4.78323 4.85782 4.93544 5.00120 5.07604 5.09676 5.11805 5.13286 5.18407 5.23158 5.30576 5.33363 5.42842 5.51273 5.53100 5.61552 5.67597 5.73301 6.05864 6.52269 6.67669 6.96817 7.53924 7.62169 8.38327 8.62631 9.55646 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008712 B = 0.005047 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.210044 B = 5546.578381 C = 7850.420920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.111 3.889 4 N -0.346 5.346 5 C 0.093 3.907 6 C -0.108 4.108 7 C 0.569 3.431 8 O -0.496 6.496 9 N -0.597 5.597 10 C 0.076 3.924 11 C -0.128 4.128 12 C -0.110 4.110 13 C -0.127 4.127 14 C 0.148 3.852 15 H 0.093 0.907 16 C 0.165 3.835 17 H 0.063 0.937 18 C -0.160 4.160 19 N -0.706 5.706 20 C -0.152 4.152 21 H 0.058 0.942 22 C -0.098 4.098 23 N -0.985 5.985 24 Si 0.955 3.045 25 H -0.286 1.286 26 H -0.305 1.305 27 H -0.285 1.285 28 N -0.220 5.220 29 N -0.086 5.086 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.216 0.784 38 H 0.129 0.871 39 H 0.076 0.924 40 H 0.033 0.967 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.035 0.965 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.032 0.968 48 H 0.070 0.930 49 H 0.367 0.633 50 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.570 1.928 17.940 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.132 5.132 5 C -0.064 4.064 6 C -0.247 4.247 7 C 0.353 3.647 8 O -0.368 6.368 9 N -0.331 5.331 10 C -0.047 4.047 11 C -0.167 4.167 12 C -0.147 4.147 13 C -0.165 4.165 14 C 0.045 3.955 15 H 0.111 0.889 16 C 0.057 3.943 17 H 0.081 0.919 18 C -0.220 4.220 19 N -0.346 5.346 20 C -0.286 4.286 21 H 0.076 0.924 22 C -0.287 4.287 23 N -0.641 5.641 24 Si 0.788 3.212 25 H -0.214 1.214 26 H -0.232 1.232 27 H -0.212 1.212 28 N -0.092 5.092 29 N -0.065 5.065 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.233 0.767 38 H 0.145 0.855 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.099 0.901 46 H 0.062 0.938 47 H 0.051 0.949 48 H 0.089 0.911 49 H 0.201 0.799 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.780 1.554 18.550 20.175 hybrid contribution -0.593 0.083 -2.207 2.287 sum -8.374 1.637 16.342 18.436 Atomic orbital electron populations 1.21670 0.91975 1.03146 1.03337 1.21790 0.98435 0.94315 1.02768 1.22618 0.70185 1.00552 1.07401 1.50712 1.09846 1.33853 1.18787 1.23598 0.89827 0.97111 0.95875 1.21793 0.95529 1.08268 0.99153 1.17290 0.82416 0.81670 0.83285 1.91083 1.85577 1.39474 1.20681 1.47727 1.04710 1.48448 1.32191 1.22725 1.04100 0.91245 0.86677 1.21861 0.95807 0.97682 1.01319 1.21494 0.96969 0.99414 0.96831 1.21901 0.98949 0.97387 0.98294 1.21605 0.84550 0.94685 0.94688 0.88908 1.20807 0.93659 0.92385 0.87444 0.91906 1.22418 0.99050 0.99979 1.00531 1.42544 1.54800 1.08136 1.29089 1.19235 1.15957 0.93363 0.99998 0.92379 1.25187 1.04858 0.96009 1.02628 1.69816 1.52787 1.03239 1.38282 0.85418 0.79812 0.75931 0.80056 1.21362 1.23175 1.21183 1.74110 1.12462 1.11301 1.11326 1.81767 0.93879 1.17974 1.12914 0.90780 0.91409 0.91753 0.92870 0.91235 0.86070 0.85357 0.76727 0.85464 0.90579 0.94839 0.88723 0.91277 0.89799 0.94578 0.90135 0.93757 0.94880 0.91145 0.79914 0.95370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.91 71.98 0.71 -0.62 16 2 C -0.13 -1.95 6.14 30.60 0.19 -1.77 16 3 C 0.11 1.55 6.54 86.38 0.56 2.11 16 4 N -0.35 -8.36 3.69 -347.10 -1.28 -9.64 16 5 C 0.09 2.72 11.27 83.85 0.95 3.66 16 6 C -0.11 -3.81 6.77 40.82 0.28 -3.54 16 7 C 0.57 23.20 7.40 86.69 0.64 23.84 16 8 O -0.50 -23.66 9.60 -4.01 -0.04 -23.69 16 9 N -0.60 -21.31 2.97 -798.76 -2.37 -23.68 16 10 C 0.08 2.22 6.21 86.36 0.54 2.76 16 11 C -0.13 -3.52 6.08 30.67 0.19 -3.34 16 12 C -0.11 -2.80 5.88 30.62 0.18 -2.62 16 13 C -0.13 -4.16 4.88 30.67 0.15 -4.01 16 14 C 0.15 5.09 2.72 44.97 0.12 5.21 16 15 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 16 C 0.17 6.94 1.88 44.99 0.08 7.03 16 17 H 0.06 2.91 5.88 -7.35 -0.04 2.86 16 18 C -0.16 -5.87 9.17 71.98 0.66 -5.21 16 19 N -0.71 -37.04 3.64 -322.95 -1.18 -38.22 16 20 C -0.15 -8.90 7.98 84.03 0.67 -8.23 16 21 H 0.06 3.41 7.83 -2.91 -0.02 3.38 16 22 C -0.10 -5.97 5.50 84.86 0.47 -5.50 16 23 N -0.99 -64.07 13.06 21.65 0.28 -63.79 16 24 Si 0.96 49.51 29.55 68.60 2.03 51.54 16 25 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 26 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 27 H -0.28 -14.17 7.11 99.48 0.71 -13.47 16 28 N -0.22 -7.21 8.64 -49.99 -0.43 -7.64 16 29 N -0.09 -2.52 13.65 37.02 0.51 -2.02 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.13 1.21 8.08 -2.39 -0.02 1.19 16 37 H 0.22 5.57 8.06 -2.91 -0.02 5.55 16 38 H 0.13 4.04 3.79 -86.58 -0.33 3.71 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.04 1.52 6.01 -2.38 -0.01 1.50 16 45 H 0.08 2.42 7.05 -2.39 -0.02 2.41 16 46 H 0.04 1.63 7.03 -2.39 -0.02 1.61 16 47 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 48 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 49 H 0.37 20.98 5.57 -92.71 -0.52 20.46 16 50 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -77.56 386.06 3.98 -73.58 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.08 Total: 33.77 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 6.39 Total: 9.78 kcal Atomic # 7 Polarization: -140.51 SS G_CDS: -4.48 Total: -144.98 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.04 Total: -23.69 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.03 Total: 51.54 kcal Total: -77.56 3.98 -73.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266005656.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.461 kcal (2) G-P(sol) polarization free energy of solvation -77.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds