Wall clock time and date at job start Tue Mar 31 2020 18:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47212 * 2 1 4 4 N 1.46504 * 109.46997 * 180.02562 * 3 2 1 5 5 C 1.34817 * 126.59691 * 125.27220 * 4 3 2 6 6 C 1.36590 * 106.84387 * 180.15173 * 5 4 3 7 7 C 1.47521 * 125.77465 * 179.89690 * 6 5 4 8 8 O 1.21601 * 119.99633 * 352.67046 * 7 6 5 9 9 N 1.34771 * 120.00182 * 172.66198 * 7 6 5 10 10 C 1.46925 * 120.63142 * 352.71990 * 9 7 6 11 11 C 1.53194 * 108.77935 * 233.58216 * 10 9 7 12 12 C 1.53039 * 109.31052 * 305.36735 * 11 10 9 13 13 C 1.53001 * 109.45907 * 181.38040 * 12 11 10 14 14 H 1.09000 * 109.47213 * 59.99813 * 13 12 11 15 15 C 1.52998 * 109.47367 * 300.00125 * 13 12 11 16 16 N 1.46503 * 109.47303 * 180.02562 * 13 12 11 17 17 C 1.36935 * 119.99940 * 205.00437 * 16 13 12 18 18 H 1.08001 * 120.00372 * 359.97438 * 17 16 13 19 19 C 1.38816 * 120.00082 * 179.97438 * 17 16 13 20 20 N 1.31625 * 119.99616 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00108 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47205 * 89.99832 * 21 19 17 23 23 H 1.48498 * 109.46798 * 209.99720 * 21 19 17 24 24 H 1.48496 * 109.47052 * 329.99900 * 21 19 17 25 25 C 1.53042 * 109.53956 * 61.36426 * 12 11 10 26 26 C 1.46927 * 120.63096 * 172.69270 * 9 7 6 27 27 N 1.34404 * 108.45415 * 359.63334 * 6 5 4 28 28 N 1.28761 * 109.52790 * 0.22756 * 27 6 5 29 29 H 1.08997 * 109.47385 * 59.99508 * 1 2 3 30 30 H 1.09002 * 109.47365 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46821 * 299.99898 * 1 2 3 32 32 H 1.09003 * 109.46821 * 240.00101 * 2 1 3 33 33 H 1.08997 * 109.47385 * 120.00492 * 2 1 3 34 34 H 1.09003 * 109.47145 * 60.00300 * 3 2 1 35 35 H 1.08999 * 109.47567 * 300.00019 * 3 2 1 36 36 H 1.07996 * 126.57473 * 0.02562 * 5 4 3 37 37 H 1.09005 * 109.58423 * 113.79634 * 10 9 7 38 38 H 1.09003 * 109.58789 * 353.37454 * 10 9 7 39 39 H 1.08993 * 109.50149 * 185.41499 * 11 10 9 40 40 H 1.08998 * 109.49390 * 65.31366 * 11 10 9 41 41 H 1.08996 * 109.46147 * 301.34006 * 12 11 10 42 42 H 1.09007 * 109.47080 * 299.99953 * 15 13 12 43 43 H 1.09001 * 109.47287 * 59.99327 * 15 13 12 44 44 H 1.09000 * 109.47420 * 180.02562 * 15 13 12 45 45 H 0.96999 * 119.99701 * 24.99777 * 16 13 12 46 46 H 0.97001 * 119.99837 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.50312 * 58.58436 * 25 12 11 48 48 H 1.08999 * 109.49911 * 178.65232 * 25 12 11 49 49 H 1.08996 * 109.58436 * 6.63340 * 26 9 7 50 50 H 1.08998 * 109.70833 * 246.27353 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3084 2.0676 -0.8845 6 6 5.5941 1.7981 -0.5102 7 6 6.8100 2.2775 -1.1944 8 8 6.7192 2.8640 -2.2557 9 7 8.0214 2.0656 -0.6430 10 6 8.1405 1.5030 0.7090 11 6 9.0223 2.4290 1.5526 12 6 10.3599 2.6414 0.8402 13 6 11.2566 3.5382 1.6962 14 1 11.4304 3.0628 2.6616 15 6 10.5718 4.8897 1.9094 16 7 12.5370 3.7423 1.0142 17 6 13.6578 4.0478 1.7391 18 1 13.5979 4.1387 2.8136 19 6 14.8712 4.2407 1.0929 20 7 14.9444 4.1294 -0.2165 21 14 16.4000 4.6582 2.0818 22 1 17.0922 3.4048 2.4759 23 1 17.3124 5.4888 1.2554 24 1 16.0107 5.4127 3.3001 25 6 10.1174 3.3085 -0.5157 26 6 9.2481 2.3923 -1.3828 27 7 5.5641 1.0269 0.5902 28 7 4.3412 0.7962 0.9208 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.9955 2.6649 -1.7280 37 1 8.5961 0.5142 0.6545 38 1 7.1518 1.4274 1.1618 39 1 9.1976 1.9753 2.5280 40 1 8.5225 3.3889 1.6819 41 1 10.8479 1.6786 0.6891 42 1 10.3979 5.3652 0.9440 43 1 9.6189 4.7382 2.4166 44 1 11.2108 5.5287 2.5188 45 1 12.5908 3.6609 0.0491 46 1 15.7921 4.2645 -0.6681 47 1 9.6073 4.2602 -0.3670 48 1 11.0723 3.4813 -1.0121 49 1 8.9902 2.9037 -2.3101 50 1 9.7950 1.4773 -1.6099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267493627.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:22 Heat of formation + Delta-G solvation = 73.444747 kcal Electronic energy + Delta-G solvation = -29142.953692 eV Core-core repulsion = 25207.810607 eV Total energy + Delta-G solvation = -3935.143085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.54719 -39.90006 -37.88280 -36.50287 -35.34044 -33.21184 -32.74448 -31.54945 -30.71215 -30.32249 -28.11454 -27.56925 -25.51449 -23.99161 -23.63184 -23.33727 -22.40549 -21.97276 -21.22745 -19.83645 -18.55376 -17.68882 -17.13911 -16.69130 -16.39529 -16.07722 -15.59745 -15.10787 -14.94605 -14.74157 -14.27791 -14.11593 -14.03497 -13.67748 -13.58250 -13.30346 -13.22995 -12.86430 -12.74123 -12.56399 -12.41862 -12.17973 -12.06118 -11.96510 -11.56386 -11.49975 -11.22648 -11.09102 -10.90533 -10.78651 -10.67026 -10.47337 -10.27521 -10.18770 -9.98962 -9.88535 -9.57159 -9.55633 -9.37926 -8.83832 -8.47043 -6.87537 -5.70254 -2.97649 0.83987 1.49152 1.65605 2.99284 3.19979 3.47442 3.52652 3.54197 3.77906 3.92991 4.09953 4.33093 4.45159 4.58086 4.64633 4.66928 4.71551 4.91405 5.02115 5.07054 5.23267 5.25494 5.30122 5.33659 5.41116 5.44578 5.55040 5.59644 5.63639 5.77566 5.85965 5.93619 6.00317 6.08341 6.12805 6.21879 6.28066 6.35389 6.40934 6.42151 6.60925 6.68486 6.80599 6.89382 7.02859 7.25354 7.42667 7.67632 7.76708 8.13888 8.49402 9.60201 10.19943 10.54479 11.52717 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.033667 B = 0.002038 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.470394 B =13734.610072 C =14149.931629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.360 5.360 5 C 0.091 3.909 6 C -0.093 4.093 7 C 0.601 3.399 8 O -0.546 6.546 9 N -0.589 5.589 10 C 0.085 3.915 11 C -0.127 4.127 12 C -0.091 4.091 13 C 0.178 3.822 14 H 0.045 0.955 15 C -0.166 4.166 16 N -0.724 5.724 17 C -0.234 4.234 18 H 0.069 0.931 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.283 1.283 25 C -0.126 4.126 26 C 0.111 3.889 27 N -0.202 5.202 28 N -0.066 5.066 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.204 0.796 37 H 0.066 0.934 38 H 0.123 0.877 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.048 0.952 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.067 0.933 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.073 -7.417 -0.916 31.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C -0.001 4.001 4 N -0.145 5.145 5 C -0.065 4.065 6 C -0.232 4.232 7 C 0.386 3.614 8 O -0.424 6.424 9 N -0.320 5.320 10 C -0.038 4.038 11 C -0.166 4.166 12 C -0.110 4.110 13 C 0.068 3.932 14 H 0.063 0.937 15 C -0.226 4.226 16 N -0.367 5.367 17 C -0.365 4.365 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.209 1.209 25 C -0.164 4.164 26 C -0.011 4.011 27 N -0.075 5.075 28 N -0.046 5.046 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.221 0.779 37 H 0.085 0.915 38 H 0.140 0.860 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.218 0.782 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.104 0.896 49 H 0.108 0.892 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -30.970 -7.948 -0.103 31.974 hybrid contribution 0.858 0.894 -0.601 1.377 sum -30.111 -7.054 -0.703 30.935 Atomic orbital electron populations 1.21706 0.93797 1.02934 1.02372 1.21834 0.97000 0.94511 1.04296 1.22179 0.72490 1.00157 1.05227 1.50549 1.08813 1.34979 1.20191 1.23372 0.90092 0.97062 0.95998 1.21517 0.94629 1.07993 0.99099 1.16806 0.81670 0.78911 0.83985 1.90790 1.86167 1.42696 1.22730 1.47923 1.05109 1.61768 1.17197 1.22546 1.03757 0.96323 0.81150 1.22010 0.95972 0.99924 0.98675 1.21410 0.94808 0.99768 0.95056 1.20197 0.86143 0.92338 0.94530 0.93684 1.22528 0.98733 1.00563 1.00809 1.42499 1.03126 1.84346 1.06693 1.19257 0.87043 1.39098 0.91144 0.91321 1.24714 0.97707 1.03099 0.95622 1.69657 1.25072 1.56899 1.06683 0.86218 0.83517 0.77780 0.78861 1.21845 1.21887 1.20892 1.21963 1.00082 0.98424 0.95936 1.21769 0.83870 0.99674 0.95763 1.74470 1.12045 1.10825 1.10186 1.81995 0.93638 1.16932 1.12019 0.92206 0.91593 0.92045 0.91007 0.89958 0.88251 0.87671 0.77914 0.91541 0.85999 0.90805 0.91512 0.91079 0.93335 0.94471 0.93252 0.78164 0.93631 0.91452 0.89648 0.89174 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.31 9.91 37.16 0.37 0.06 16 2 C -0.14 -0.50 6.14 -26.73 -0.16 -0.67 16 3 C 0.12 0.43 6.54 -4.04 -0.03 0.40 16 4 N -0.36 -2.79 3.69 -61.06 -0.23 -3.02 16 5 C 0.09 0.79 11.28 -16.84 -0.19 0.60 16 6 C -0.09 -1.13 6.69 -83.55 -0.56 -1.69 16 7 C 0.60 8.68 7.67 -12.48 -0.10 8.58 16 8 O -0.55 -9.03 16.30 5.28 0.09 -8.95 16 9 N -0.59 -8.38 2.97 -173.99 -0.52 -8.89 16 10 C 0.09 1.12 6.08 -3.71 -0.02 1.09 16 11 C -0.13 -1.76 4.96 -26.61 -0.13 -1.89 16 12 C -0.09 -1.50 2.14 -90.58 -0.19 -1.70 16 13 C 0.18 3.54 2.72 -67.93 -0.18 3.36 16 14 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 15 C -0.17 -3.10 8.79 37.16 0.33 -2.77 16 16 N -0.72 -18.10 5.04 -53.42 -0.27 -18.36 16 17 C -0.23 -6.55 9.93 -15.06 -0.15 -6.69 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 21 Si 0.90 22.70 29.55 -169.99 -5.02 17.68 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C -0.13 -2.06 4.81 -26.61 -0.13 -2.18 16 26 C 0.11 1.63 6.44 -3.71 -0.02 1.61 16 27 N -0.20 -2.50 8.79 32.84 0.29 -2.21 16 28 N -0.07 -0.73 13.65 60.35 0.82 0.10 16 29 H 0.06 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.11 0.11 8.08 -51.93 -0.42 -0.31 16 36 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.12 1.57 4.12 -77.88 -0.32 1.25 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.95 6.51 -51.93 -0.34 0.61 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 0.92 6.46 -51.92 -0.34 0.58 16 43 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.38 10.06 6.04 -40.82 -0.25 9.81 16 46 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.07 1.13 6.51 -51.93 -0.34 0.80 16 48 H 0.09 1.56 6.46 -51.93 -0.34 1.23 16 49 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 50 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 393.47 15.07 5.93 5.93 Total: -1.00 -33.98 393.47 -7.53 -41.51 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -8.07 Total: 6.32 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.27 Total: -2.45 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.83 Total: -60.05 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.98 -7.53 -41.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267493627.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.956 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds