Wall clock time and date at job start Tue Mar 31 2020 18:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47212 * 2 1 4 4 N 1.46504 * 109.46997 * 180.02562 * 3 2 1 5 5 C 1.34817 * 126.59691 * 125.27220 * 4 3 2 6 6 C 1.36590 * 106.84387 * 180.15173 * 5 4 3 7 7 C 1.47521 * 125.77465 * 179.89690 * 6 5 4 8 8 O 1.21601 * 119.99633 * 352.67046 * 7 6 5 9 9 N 1.34771 * 120.00182 * 172.66198 * 7 6 5 10 10 C 1.46925 * 120.63142 * 352.71990 * 9 7 6 11 11 C 1.53194 * 108.77935 * 233.58216 * 10 9 7 12 12 C 1.53039 * 109.31052 * 305.36735 * 11 10 9 13 13 C 1.53001 * 109.45907 * 181.38040 * 12 11 10 14 14 H 1.09000 * 109.47213 * 59.99813 * 13 12 11 15 15 C 1.52998 * 109.47367 * 300.00125 * 13 12 11 16 16 N 1.46503 * 109.47303 * 180.02562 * 13 12 11 17 17 C 1.36935 * 119.99940 * 205.00437 * 16 13 12 18 18 H 1.08001 * 120.00372 * 359.97438 * 17 16 13 19 19 C 1.38816 * 120.00082 * 179.97438 * 17 16 13 20 20 N 1.31625 * 119.99616 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00108 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47205 * 89.99832 * 21 19 17 23 23 H 1.48498 * 109.46798 * 209.99720 * 21 19 17 24 24 H 1.48496 * 109.47052 * 329.99900 * 21 19 17 25 25 C 1.53042 * 109.53956 * 61.36426 * 12 11 10 26 26 C 1.46927 * 120.63096 * 172.69270 * 9 7 6 27 27 N 1.34404 * 108.45415 * 359.63334 * 6 5 4 28 28 N 1.28761 * 109.52790 * 0.22756 * 27 6 5 29 29 H 1.08997 * 109.47385 * 59.99508 * 1 2 3 30 30 H 1.09002 * 109.47365 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46821 * 299.99898 * 1 2 3 32 32 H 1.09003 * 109.46821 * 240.00101 * 2 1 3 33 33 H 1.08997 * 109.47385 * 120.00492 * 2 1 3 34 34 H 1.09003 * 109.47145 * 60.00300 * 3 2 1 35 35 H 1.08999 * 109.47567 * 300.00019 * 3 2 1 36 36 H 1.07996 * 126.57473 * 0.02562 * 5 4 3 37 37 H 1.09005 * 109.58423 * 113.79634 * 10 9 7 38 38 H 1.09003 * 109.58789 * 353.37454 * 10 9 7 39 39 H 1.08993 * 109.50149 * 185.41499 * 11 10 9 40 40 H 1.08998 * 109.49390 * 65.31366 * 11 10 9 41 41 H 1.08996 * 109.46147 * 301.34006 * 12 11 10 42 42 H 1.09007 * 109.47080 * 299.99953 * 15 13 12 43 43 H 1.09001 * 109.47287 * 59.99327 * 15 13 12 44 44 H 1.09000 * 109.47420 * 180.02562 * 15 13 12 45 45 H 0.96999 * 119.99701 * 24.99777 * 16 13 12 46 46 H 0.97001 * 119.99837 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.50312 * 58.58436 * 25 12 11 48 48 H 1.08999 * 109.49911 * 178.65232 * 25 12 11 49 49 H 1.08996 * 109.58436 * 6.63340 * 26 9 7 50 50 H 1.08998 * 109.70833 * 246.27353 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3084 2.0676 -0.8845 6 6 5.5941 1.7981 -0.5102 7 6 6.8100 2.2775 -1.1944 8 8 6.7192 2.8640 -2.2557 9 7 8.0214 2.0656 -0.6430 10 6 8.1405 1.5030 0.7090 11 6 9.0223 2.4290 1.5526 12 6 10.3599 2.6414 0.8402 13 6 11.2566 3.5382 1.6962 14 1 11.4304 3.0628 2.6616 15 6 10.5718 4.8897 1.9094 16 7 12.5370 3.7423 1.0142 17 6 13.6578 4.0478 1.7391 18 1 13.5979 4.1387 2.8136 19 6 14.8712 4.2407 1.0929 20 7 14.9444 4.1294 -0.2165 21 14 16.4000 4.6582 2.0818 22 1 17.0922 3.4048 2.4759 23 1 17.3124 5.4888 1.2554 24 1 16.0107 5.4127 3.3001 25 6 10.1174 3.3085 -0.5157 26 6 9.2481 2.3923 -1.3828 27 7 5.5641 1.0269 0.5902 28 7 4.3412 0.7962 0.9208 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.9955 2.6649 -1.7280 37 1 8.5961 0.5142 0.6545 38 1 7.1518 1.4274 1.1618 39 1 9.1976 1.9753 2.5280 40 1 8.5225 3.3889 1.6819 41 1 10.8479 1.6786 0.6891 42 1 10.3979 5.3652 0.9440 43 1 9.6189 4.7382 2.4166 44 1 11.2108 5.5287 2.5188 45 1 12.5908 3.6609 0.0491 46 1 15.7921 4.2645 -0.6681 47 1 9.6073 4.2602 -0.3670 48 1 11.0723 3.4813 -1.0121 49 1 8.9902 2.9037 -2.3101 50 1 9.7950 1.4773 -1.6099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267493627.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:21 Heat of formation + Delta-G solvation = 51.725722 kcal Electronic energy + Delta-G solvation = -29143.895500 eV Core-core repulsion = 25207.810607 eV Total energy + Delta-G solvation = -3936.084893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.30862 -41.05115 -39.21446 -37.02938 -36.77248 -34.65840 -33.63122 -32.63747 -32.24626 -31.40438 -29.82861 -28.02589 -26.84221 -25.73184 -24.78723 -24.09588 -23.41425 -22.77918 -22.21773 -20.92434 -19.82741 -19.25664 -18.49486 -17.52116 -17.23917 -17.01534 -16.64351 -16.23312 -16.01912 -15.85091 -15.61178 -15.42973 -15.24340 -15.04306 -14.51200 -14.38220 -14.22247 -14.14053 -13.68166 -13.58038 -13.33287 -13.13573 -12.95867 -12.93003 -12.86880 -12.78493 -12.59288 -12.37317 -12.22445 -12.12997 -11.88459 -11.74724 -11.69119 -11.54610 -11.36094 -11.26919 -11.11034 -10.86028 -10.74196 -10.36687 -9.63058 -8.94801 -7.90112 -5.16900 0.15148 0.57602 1.10399 1.47917 1.49299 1.57487 1.94189 2.18736 2.58893 3.09636 3.32451 3.43053 3.68462 3.84108 3.84726 3.89696 3.94638 3.95824 4.13368 4.16395 4.19367 4.28535 4.37148 4.40109 4.49011 4.52941 4.59662 4.66441 4.69963 4.76108 4.81263 4.88305 4.96024 5.05904 5.07636 5.12933 5.14224 5.16205 5.22862 5.25308 5.33677 5.38679 5.44982 5.50546 5.56014 5.66363 5.72783 6.32827 6.34603 6.83021 7.08758 7.39051 8.18192 8.41036 9.33508 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.033667 B = 0.002038 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.470394 B =13734.610072 C =14149.931629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.110 3.890 4 N -0.346 5.346 5 C 0.111 3.889 6 C -0.122 4.122 7 C 0.600 3.400 8 O -0.573 6.573 9 N -0.593 5.593 10 C 0.091 3.909 11 C -0.118 4.118 12 C -0.081 4.081 13 C 0.172 3.828 14 H 0.042 0.958 15 C -0.156 4.156 16 N -0.736 5.736 17 C -0.235 4.235 18 H 0.073 0.927 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.969 3.031 22 H -0.288 1.288 23 H -0.298 1.298 24 H -0.272 1.272 25 C -0.116 4.116 26 C 0.118 3.882 27 N -0.220 5.220 28 N -0.085 5.085 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.140 0.860 36 H 0.236 0.764 37 H 0.071 0.929 38 H 0.132 0.868 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.069 0.931 44 H 0.030 0.970 45 H 0.374 0.626 46 H 0.249 0.751 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.084 0.916 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.752 -7.451 -0.056 34.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.131 5.131 5 C -0.047 4.047 6 C -0.262 4.262 7 C 0.387 3.613 8 O -0.453 6.453 9 N -0.323 5.323 10 C -0.032 4.032 11 C -0.156 4.156 12 C -0.100 4.100 13 C 0.064 3.936 14 H 0.060 0.940 15 C -0.215 4.215 16 N -0.377 5.377 17 C -0.367 4.367 18 H 0.091 0.909 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.799 3.201 22 H -0.215 1.215 23 H -0.224 1.224 24 H -0.197 1.197 25 C -0.155 4.155 26 C -0.004 4.004 27 N -0.093 5.093 28 N -0.065 5.065 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.252 0.748 37 H 0.089 0.911 38 H 0.149 0.851 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.207 0.793 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.103 0.897 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -33.713 -8.004 0.821 34.660 hybrid contribution 1.511 0.878 -0.856 1.946 sum -32.202 -7.126 -0.035 32.982 Atomic orbital electron populations 1.21680 0.92369 1.03035 1.03300 1.21778 0.98111 0.94386 1.02990 1.22665 0.69906 1.00525 1.07720 1.50835 1.10071 1.33331 1.18833 1.23816 0.88978 0.95859 0.96001 1.21357 0.94860 1.09845 1.00102 1.17103 0.82223 0.78251 0.83705 1.90765 1.86637 1.44002 1.23885 1.47974 1.04951 1.61828 1.17575 1.22575 1.04059 0.96122 0.80429 1.21945 0.94131 1.00391 0.99173 1.21269 0.95604 0.98360 0.94763 1.20435 0.84943 0.93701 0.94570 0.93950 1.22372 0.99688 0.99000 1.00447 1.42708 1.04353 1.84284 1.06371 1.19630 0.88041 1.37437 0.91555 0.90923 1.25494 1.00681 1.04223 0.96610 1.69816 1.25324 1.58770 1.08196 0.85195 0.79827 0.77412 0.77682 1.21541 1.22440 1.19671 1.21812 0.99041 0.98607 0.96010 1.21601 0.84129 0.99462 0.95239 1.74372 1.12988 1.11327 1.10600 1.81919 0.93627 1.17852 1.13092 0.90945 0.91978 0.91419 0.91863 0.91786 0.86746 0.84215 0.74778 0.91058 0.85141 0.89266 0.91445 0.91936 0.94002 0.91268 0.95080 0.79259 0.94236 0.91979 0.92182 0.89746 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.26 9.91 71.98 0.71 0.46 16 2 C -0.13 -0.71 6.14 30.59 0.19 -0.52 16 3 C 0.11 0.43 6.54 86.38 0.56 0.99 16 4 N -0.35 -4.49 3.69 -347.10 -1.28 -5.77 16 5 C 0.11 1.64 11.28 83.85 0.95 2.59 16 6 C -0.12 -2.78 6.69 40.81 0.27 -2.51 16 7 C 0.60 16.85 7.67 86.69 0.67 17.52 16 8 O -0.57 -18.62 16.30 -4.03 -0.07 -18.69 16 9 N -0.59 -16.49 2.97 -822.65 -2.44 -18.93 16 10 C 0.09 2.26 6.08 86.36 0.53 2.79 16 11 C -0.12 -3.08 4.96 30.67 0.15 -2.93 16 12 C -0.08 -2.64 2.14 -10.77 -0.02 -2.66 16 13 C 0.17 6.80 2.72 44.99 0.12 6.93 16 14 H 0.04 1.71 8.08 -2.39 -0.02 1.69 16 15 C -0.16 -5.68 8.79 71.98 0.63 -5.05 16 16 N -0.74 -37.39 5.04 -322.93 -1.63 -39.02 16 17 C -0.23 -13.21 9.93 84.03 0.83 -12.38 16 18 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 19 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 20 N -0.97 -60.24 13.06 21.65 0.28 -59.95 16 21 Si 0.97 47.12 29.55 68.60 2.03 49.14 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 23 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 25 C -0.12 -3.86 4.81 30.67 0.15 -3.71 16 26 C 0.12 3.50 6.44 86.36 0.56 4.05 16 27 N -0.22 -5.16 8.79 -50.00 -0.44 -5.60 16 28 N -0.09 -1.74 13.65 37.02 0.51 -1.23 16 29 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.14 -0.36 8.08 -2.39 -0.02 -0.38 16 36 H 0.24 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.13 3.18 4.12 -35.97 -0.15 3.03 16 39 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 1.77 6.51 -2.39 -0.02 1.76 16 41 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.04 1.57 6.46 -2.38 -0.02 1.55 16 43 H 0.07 2.07 6.46 -2.39 -0.02 2.05 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.37 20.27 6.04 -92.71 -0.56 19.71 16 46 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 47 H 0.06 2.11 6.51 -2.39 -0.02 2.09 16 48 H 0.06 2.30 6.46 -2.39 -0.02 2.29 16 49 H 0.08 2.61 7.00 -2.39 -0.02 2.59 16 50 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -74.45 393.47 3.97 -70.48 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.25 Total: 28.11 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 6.76 Total: 1.47 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -5.01 Total: -130.51 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.07 Total: -18.69 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Total: -74.45 3.97 -70.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267493627.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.202 kcal (2) G-P(sol) polarization free energy of solvation -74.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds