Wall clock time and date at job start Tue Mar 31 2020 19:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46770 * 2 1 4 4 N 1.46495 * 109.46759 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99879 * 276.41519 * 4 3 2 6 6 O 1.21606 * 120.00020 * 175.99066 * 5 4 3 7 7 C 1.47513 * 120.00313 * 355.99241 * 5 4 3 8 8 C 1.36600 * 125.77742 * 185.93066 * 7 5 4 9 9 N 1.34812 * 106.84252 * 179.97438 * 8 7 5 10 10 C 1.46497 * 126.59202 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.46890 * 125.00069 * 10 9 8 12 12 C 1.52997 * 109.47029 * 180.02562 * 11 10 9 13 13 N 1.40203 * 106.81303 * 0.02562 * 9 8 7 14 14 N 1.28762 * 108.36740 * 359.74501 * 13 9 8 15 15 C 1.46498 * 120.00039 * 96.41791 * 4 3 2 16 16 H 1.08995 * 110.64327 * 358.31115 * 15 4 3 17 17 C 1.55165 * 110.87247 * 235.06193 * 15 4 3 18 18 C 1.55132 * 101.48495 * 205.89958 * 17 15 4 19 19 N 1.47417 * 104.72292 * 37.29358 * 18 17 15 20 20 C 1.36937 * 125.64754 * 155.81533 * 19 18 17 21 21 H 1.08005 * 120.00347 * 179.69069 * 20 19 18 22 22 C 1.38814 * 119.99772 * 359.69329 * 20 19 18 23 23 N 1.31618 * 120.00388 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99897 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46908 * 60.00333 * 24 22 20 26 26 H 1.48499 * 109.47169 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47236 * 300.00453 * 24 22 20 28 28 C 1.47019 * 108.70855 * 335.55377 * 19 18 17 29 29 H 1.08998 * 109.47395 * 300.00155 * 1 2 3 30 30 H 1.09002 * 109.47267 * 60.00025 * 1 2 3 31 31 H 1.09004 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46994 * 240.00481 * 2 1 3 33 33 H 1.08991 * 109.46572 * 119.99910 * 2 1 3 34 34 H 1.09004 * 109.47094 * 60.00209 * 3 2 1 35 35 H 1.09002 * 109.47205 * 300.00013 * 3 2 1 36 36 H 1.08003 * 126.57423 * 359.97438 * 8 7 5 37 37 H 1.08993 * 109.47695 * 245.00221 * 10 9 8 38 38 H 1.09004 * 109.47184 * 5.00473 * 10 9 8 39 39 H 1.09000 * 109.47517 * 299.99775 * 11 10 9 40 40 H 1.09004 * 109.46878 * 60.00215 * 11 10 9 41 41 H 1.09002 * 109.47431 * 299.99901 * 12 11 10 42 42 H 1.09004 * 109.47155 * 60.00336 * 12 11 10 43 43 H 1.09004 * 109.46982 * 180.02562 * 12 11 10 44 44 H 1.08998 * 110.99955 * 324.13883 * 17 15 4 45 45 H 1.09004 * 111.00222 * 87.98925 * 17 15 4 46 46 H 1.08997 * 110.49393 * 278.45221 * 18 17 15 47 47 H 1.08995 * 110.33892 * 156.06078 * 18 17 15 48 48 H 0.96999 * 120.00225 * 179.97438 * 23 22 20 49 49 H 1.09005 * 109.88651 * 120.70014 * 28 19 18 50 50 H 1.08999 * 109.88692 * 241.71684 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1783 1.3123 1.1608 6 8 5.3921 1.2390 1.1544 7 6 3.4429 1.2586 2.4385 8 6 4.0050 1.2437 3.6834 9 7 2.9903 1.1923 4.5695 10 6 3.1067 1.1586 6.0295 11 6 2.2890 2.3026 6.6327 12 6 2.4111 2.2678 8.1574 13 7 1.8023 1.1761 3.8251 14 7 2.1063 1.2213 2.5747 15 6 4.2379 1.5842 -1.2599 16 1 3.5475 1.6483 -2.1008 17 6 5.2335 0.4102 -1.4553 18 6 6.3008 1.0600 -2.3747 19 7 6.4162 2.4480 -1.8917 20 6 7.5076 3.2599 -2.0498 21 1 7.4917 4.2678 -1.6620 22 6 8.6344 2.7874 -2.7086 23 7 8.6537 1.5593 -3.1817 24 14 10.1230 3.8951 -2.9249 25 1 10.6325 4.3054 -1.5917 26 1 11.1859 3.1588 -3.6552 27 1 9.7342 5.1012 -3.6989 28 6 5.1633 2.8186 -1.2177 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 5.0599 1.2683 3.9136 37 1 2.7294 0.2065 6.4022 38 1 4.1531 1.2710 6.3132 39 1 2.6664 3.2549 6.2601 40 1 1.2426 2.1902 6.3489 41 1 2.0340 1.3156 8.5306 42 1 3.4576 2.3804 8.4408 43 1 1.8282 3.0825 8.5872 44 1 5.6674 0.1034 -0.5036 45 1 4.7520 -0.4317 -1.9529 46 1 5.9695 1.0460 -3.4130 47 1 7.2545 0.5423 -2.2728 48 1 9.4410 1.2293 -3.6423 49 1 5.3664 3.0944 -0.1829 50 1 4.6949 3.6537 -1.7386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267548382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:13 Heat of formation + Delta-G solvation = 100.421248 kcal Electronic energy + Delta-G solvation = -30040.882021 eV Core-core repulsion = 26106.908725 eV Total energy + Delta-G solvation = -3933.973296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31610 -39.70037 -36.68558 -36.35515 -35.66910 -32.92868 -32.84124 -31.70921 -30.78864 -28.98553 -27.64933 -26.98851 -25.85988 -24.54942 -23.30802 -22.96382 -21.80184 -21.51559 -20.69175 -19.99031 -18.97301 -17.36475 -16.78306 -16.46632 -16.35352 -15.83872 -15.42147 -14.77393 -14.63246 -14.46695 -14.45650 -14.17296 -13.89720 -13.70698 -13.30026 -13.12337 -12.87014 -12.58597 -12.45362 -12.27373 -12.20141 -11.94620 -11.90434 -11.56124 -11.38911 -11.34418 -11.24581 -11.04477 -10.86397 -10.75568 -10.63857 -10.62557 -10.40453 -10.23077 -10.02434 -9.67925 -9.42653 -9.28443 -9.12250 -8.49766 -8.13877 -6.64838 -5.49337 -2.89800 1.05864 1.77639 1.86018 3.23313 3.49864 3.52529 3.53361 3.55124 3.94353 4.16543 4.24476 4.50095 4.61287 4.64608 4.72877 4.85404 4.91095 5.05332 5.09677 5.18934 5.22795 5.40923 5.45028 5.48804 5.52954 5.56680 5.61593 5.64521 5.66864 5.72804 5.91654 5.92791 5.96806 6.03729 6.14069 6.22067 6.25490 6.49554 6.51042 6.68542 6.72286 6.77460 6.90321 7.33047 7.64364 7.75485 7.78935 7.90434 8.02902 8.51367 8.55695 9.37766 9.99036 10.64856 11.54288 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012762 B = 0.003078 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.522896 B = 9095.377512 C =10791.698938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.103 3.897 4 N -0.590 5.590 5 C 0.593 3.407 6 O -0.508 6.508 7 C -0.092 4.092 8 C 0.090 3.910 9 N -0.363 5.363 10 C 0.121 3.879 11 C -0.138 4.138 12 C -0.150 4.150 13 N -0.075 5.075 14 N -0.200 5.200 15 C 0.136 3.864 16 H 0.089 0.911 17 C -0.157 4.157 18 C 0.158 3.842 19 N -0.596 5.596 20 C -0.213 4.213 21 H 0.074 0.926 22 C -0.014 4.014 23 N -0.924 5.924 24 Si 0.913 3.087 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.287 1.287 28 C 0.134 3.866 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.203 0.797 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.051 0.949 46 H 0.009 0.991 47 H 0.107 0.893 48 H 0.251 0.749 49 H 0.033 0.967 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.924 -2.904 19.306 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C -0.020 4.020 4 N -0.321 5.321 5 C 0.377 3.623 6 O -0.382 6.382 7 C -0.231 4.231 8 C -0.067 4.067 9 N -0.148 5.148 10 C 0.000 4.000 11 C -0.176 4.176 12 C -0.208 4.208 13 N -0.055 5.055 14 N -0.074 5.074 15 C 0.033 3.967 16 H 0.107 0.893 17 C -0.197 4.197 18 C 0.033 3.967 19 N -0.322 5.322 20 C -0.342 4.342 21 H 0.092 0.908 22 C -0.209 4.209 23 N -0.573 5.573 24 Si 0.744 3.256 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.214 1.214 28 C 0.007 3.993 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.220 0.780 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.070 0.930 46 H 0.027 0.973 47 H 0.125 0.875 48 H 0.061 0.939 49 H 0.051 0.949 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -17.563 -2.982 19.312 26.273 hybrid contribution 1.705 0.584 -0.053 1.803 sum -15.858 -2.398 19.259 25.062 Atomic orbital electron populations 1.21635 0.95450 1.01289 1.01775 1.21793 0.95840 0.97253 1.01890 1.21999 0.78869 0.97397 1.03775 1.47768 1.06727 1.71375 1.06263 1.16817 0.86217 0.77622 0.81598 1.90913 1.12242 1.48923 1.86107 1.21699 0.89860 1.16224 0.95341 1.23407 0.96352 0.98048 0.88855 1.50493 1.05971 1.49897 1.08438 1.22128 1.03239 1.01671 0.72929 1.21827 1.01561 0.97774 0.96422 1.21706 1.02441 1.02666 0.93982 1.81926 1.04286 1.22746 0.96492 1.74766 1.12767 1.10319 1.09498 1.22236 0.93292 0.97999 0.83199 0.89255 1.23514 0.97688 0.95816 1.02640 1.21896 0.97954 0.84973 0.91904 1.44293 1.11165 1.11635 1.65102 1.19009 0.90970 0.94378 1.29802 0.90790 1.24752 0.98224 0.96865 1.01036 1.69788 1.28823 1.15166 1.43540 0.86164 0.82500 0.79331 0.77582 1.21302 1.21672 1.21383 1.21475 0.87734 0.93413 0.96685 0.92239 0.93006 0.93150 0.92311 0.92036 0.88053 0.90965 0.77984 0.88479 0.87748 0.90998 0.90070 0.92132 0.92184 0.91675 0.89563 0.93027 0.97328 0.87528 0.93870 0.94901 0.96536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.13 -1.59 5.74 -26.73 -0.15 -1.74 16 3 C 0.10 1.38 4.99 -4.04 -0.02 1.36 16 4 N -0.59 -9.86 2.56 -165.24 -0.42 -10.29 16 5 C 0.59 10.49 6.71 -12.48 -0.08 10.40 16 6 O -0.51 -10.86 13.25 5.27 0.07 -10.79 16 7 C -0.09 -1.33 6.53 -83.55 -0.55 -1.87 16 8 C 0.09 1.02 11.28 -16.83 -0.19 0.83 16 9 N -0.36 -3.51 3.69 -61.06 -0.23 -3.73 16 10 C 0.12 0.65 6.54 -4.04 -0.03 0.63 16 11 C -0.14 -0.71 6.14 -26.73 -0.16 -0.88 16 12 C -0.15 -0.52 9.91 37.16 0.37 -0.15 16 13 N -0.07 -0.91 13.65 60.35 0.82 -0.09 16 14 N -0.20 -2.70 7.57 32.85 0.25 -2.46 16 15 C 0.14 2.61 3.43 -66.09 -0.23 2.39 16 16 H 0.09 1.55 7.80 -51.93 -0.41 1.15 16 17 C -0.16 -3.37 6.41 -24.46 -0.16 -3.52 16 18 C 0.16 4.12 5.91 -2.41 -0.01 4.11 16 19 N -0.60 -16.44 3.39 -169.94 -0.58 -17.02 16 20 C -0.21 -6.31 10.27 -15.06 -0.15 -6.46 16 21 H 0.07 2.12 7.83 -52.48 -0.41 1.71 16 22 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 23 N -0.92 -28.19 10.08 55.49 0.56 -27.63 16 24 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 C 0.13 3.10 6.51 -3.06 -0.02 3.08 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.84 7.07 -51.93 -0.37 0.47 16 34 H 0.10 1.36 5.27 -51.93 -0.27 1.09 16 35 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 36 H 0.20 1.83 8.06 -52.48 -0.42 1.41 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.33 8.08 -51.93 -0.42 -0.09 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.09 2.00 5.69 -51.93 -0.30 1.71 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 47 H 0.11 3.14 5.86 -51.93 -0.30 2.83 16 48 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.03 0.81 6.40 -51.93 -0.33 0.48 16 50 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 394.88 15.07 5.95 5.95 Total: -1.00 -35.22 394.88 -7.98 -43.20 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -8.27 Total: -1.75 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -1.11 Total: 6.57 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.41 Total: -61.21 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.22 -7.98 -43.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267548382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.616 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds