Wall clock time and date at job start Tue Mar 31 2020 19:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46770 * 2 1 4 4 N 1.46495 * 109.46759 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99879 * 276.41519 * 4 3 2 6 6 O 1.21606 * 120.00020 * 175.99066 * 5 4 3 7 7 C 1.47513 * 120.00313 * 355.99241 * 5 4 3 8 8 C 1.36600 * 125.77742 * 185.93066 * 7 5 4 9 9 N 1.34812 * 106.84252 * 179.97438 * 8 7 5 10 10 C 1.46497 * 126.59202 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.46890 * 125.00069 * 10 9 8 12 12 C 1.52997 * 109.47029 * 180.02562 * 11 10 9 13 13 N 1.40203 * 106.81303 * 0.02562 * 9 8 7 14 14 N 1.28762 * 108.36740 * 359.74501 * 13 9 8 15 15 C 1.46498 * 120.00039 * 96.41791 * 4 3 2 16 16 H 1.08995 * 110.64327 * 358.31115 * 15 4 3 17 17 C 1.55165 * 110.87247 * 235.06193 * 15 4 3 18 18 C 1.55132 * 101.48495 * 205.89958 * 17 15 4 19 19 N 1.47417 * 104.72292 * 37.29358 * 18 17 15 20 20 C 1.36937 * 125.64754 * 155.81533 * 19 18 17 21 21 H 1.08005 * 120.00347 * 179.69069 * 20 19 18 22 22 C 1.38814 * 119.99772 * 359.69329 * 20 19 18 23 23 N 1.31618 * 120.00388 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99897 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46908 * 60.00333 * 24 22 20 26 26 H 1.48499 * 109.47169 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47236 * 300.00453 * 24 22 20 28 28 C 1.47019 * 108.70855 * 335.55377 * 19 18 17 29 29 H 1.08998 * 109.47395 * 300.00155 * 1 2 3 30 30 H 1.09002 * 109.47267 * 60.00025 * 1 2 3 31 31 H 1.09004 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46994 * 240.00481 * 2 1 3 33 33 H 1.08991 * 109.46572 * 119.99910 * 2 1 3 34 34 H 1.09004 * 109.47094 * 60.00209 * 3 2 1 35 35 H 1.09002 * 109.47205 * 300.00013 * 3 2 1 36 36 H 1.08003 * 126.57423 * 359.97438 * 8 7 5 37 37 H 1.08993 * 109.47695 * 245.00221 * 10 9 8 38 38 H 1.09004 * 109.47184 * 5.00473 * 10 9 8 39 39 H 1.09000 * 109.47517 * 299.99775 * 11 10 9 40 40 H 1.09004 * 109.46878 * 60.00215 * 11 10 9 41 41 H 1.09002 * 109.47431 * 299.99901 * 12 11 10 42 42 H 1.09004 * 109.47155 * 60.00336 * 12 11 10 43 43 H 1.09004 * 109.46982 * 180.02562 * 12 11 10 44 44 H 1.08998 * 110.99955 * 324.13883 * 17 15 4 45 45 H 1.09004 * 111.00222 * 87.98925 * 17 15 4 46 46 H 1.08997 * 110.49393 * 278.45221 * 18 17 15 47 47 H 1.08995 * 110.33892 * 156.06078 * 18 17 15 48 48 H 0.96999 * 120.00225 * 179.97438 * 23 22 20 49 49 H 1.09005 * 109.88651 * 120.70014 * 28 19 18 50 50 H 1.08999 * 109.88692 * 241.71684 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1783 1.3123 1.1608 6 8 5.3921 1.2390 1.1544 7 6 3.4429 1.2586 2.4385 8 6 4.0050 1.2437 3.6834 9 7 2.9903 1.1923 4.5695 10 6 3.1067 1.1586 6.0295 11 6 2.2890 2.3026 6.6327 12 6 2.4111 2.2678 8.1574 13 7 1.8023 1.1761 3.8251 14 7 2.1063 1.2213 2.5747 15 6 4.2379 1.5842 -1.2599 16 1 3.5475 1.6483 -2.1008 17 6 5.2335 0.4102 -1.4553 18 6 6.3008 1.0600 -2.3747 19 7 6.4162 2.4480 -1.8917 20 6 7.5076 3.2599 -2.0498 21 1 7.4917 4.2678 -1.6620 22 6 8.6344 2.7874 -2.7086 23 7 8.6537 1.5593 -3.1817 24 14 10.1230 3.8951 -2.9249 25 1 10.6325 4.3054 -1.5917 26 1 11.1859 3.1588 -3.6552 27 1 9.7342 5.1012 -3.6989 28 6 5.1633 2.8186 -1.2177 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 5.0599 1.2683 3.9136 37 1 2.7294 0.2065 6.4022 38 1 4.1531 1.2710 6.3132 39 1 2.6664 3.2549 6.2601 40 1 1.2426 2.1902 6.3489 41 1 2.0340 1.3156 8.5306 42 1 3.4576 2.3804 8.4408 43 1 1.8282 3.0825 8.5872 44 1 5.6674 0.1034 -0.5036 45 1 4.7520 -0.4317 -1.9529 46 1 5.9695 1.0460 -3.4130 47 1 7.2545 0.5423 -2.2728 48 1 9.4410 1.2293 -3.6423 49 1 5.3664 3.0944 -0.1829 50 1 4.6949 3.6537 -1.7386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267548382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:12 Heat of formation + Delta-G solvation = 78.446442 kcal Electronic energy + Delta-G solvation = -30041.834920 eV Core-core repulsion = 26106.908725 eV Total energy + Delta-G solvation = -3934.926195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.26585 -41.11763 -38.42260 -37.25861 -36.73062 -34.58230 -33.55978 -33.21824 -31.94680 -30.88137 -29.06523 -27.92532 -26.99469 -26.49039 -24.43190 -23.79573 -22.73112 -22.35504 -22.09860 -21.92580 -20.16855 -18.94671 -18.40825 -17.55409 -17.16077 -17.13847 -16.71845 -16.12197 -16.00871 -15.80037 -15.56216 -15.35997 -15.35656 -14.76540 -14.41629 -14.30058 -14.00589 -13.73116 -13.67160 -13.35843 -13.28256 -13.09751 -12.96415 -12.93492 -12.74906 -12.67128 -12.47496 -12.36145 -12.21929 -12.10819 -12.03563 -11.88259 -11.79924 -11.72390 -11.60043 -11.32474 -11.07639 -10.73506 -10.64218 -10.29327 -9.55020 -8.83763 -7.73008 -5.17340 0.16069 0.67288 1.11334 1.45562 1.50511 1.56586 1.94155 2.26588 2.52873 3.14614 3.32995 3.35679 3.69942 3.77565 3.83487 3.93770 3.97397 4.03049 4.14752 4.16334 4.22683 4.28698 4.29452 4.44905 4.49307 4.53260 4.61709 4.66590 4.74299 4.79793 4.80642 4.94512 4.99550 5.03469 5.08377 5.11739 5.13142 5.17921 5.30589 5.33546 5.35882 5.45726 5.50375 5.56773 5.66485 5.81527 5.83971 6.34019 6.43105 6.90056 7.13699 7.21456 7.81264 8.46056 9.28517 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012762 B = 0.003078 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.522896 B = 9095.377512 C =10791.698938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.103 3.897 4 N -0.588 5.588 5 C 0.591 3.409 6 O -0.555 6.555 7 C -0.120 4.120 8 C 0.102 3.898 9 N -0.347 5.347 10 C 0.111 3.889 11 C -0.133 4.133 12 C -0.146 4.146 13 N -0.084 5.084 14 N -0.205 5.205 15 C 0.152 3.848 16 H 0.117 0.883 17 C -0.142 4.142 18 C 0.162 3.838 19 N -0.617 5.617 20 C -0.237 4.237 21 H 0.075 0.925 22 C -0.069 4.069 23 N -0.950 5.950 24 Si 0.983 3.017 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.276 1.276 28 C 0.133 3.867 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.224 0.776 37 H 0.115 0.885 38 H 0.133 0.867 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.079 0.921 46 H -0.004 1.004 47 H 0.069 0.931 48 H 0.247 0.753 49 H 0.016 0.984 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.315 -2.665 20.839 27.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C -0.020 4.020 4 N -0.318 5.318 5 C 0.378 3.622 6 O -0.433 6.433 7 C -0.259 4.259 8 C -0.056 4.056 9 N -0.132 5.132 10 C -0.008 4.008 11 C -0.171 4.171 12 C -0.203 4.203 13 N -0.064 5.064 14 N -0.079 5.079 15 C 0.048 3.952 16 H 0.135 0.865 17 C -0.181 4.181 18 C 0.037 3.963 19 N -0.343 5.343 20 C -0.366 4.366 21 H 0.093 0.907 22 C -0.261 4.261 23 N -0.599 5.599 24 Si 0.811 3.189 25 H -0.206 1.206 26 H -0.216 1.216 27 H -0.202 1.202 28 C 0.007 3.993 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.241 0.759 37 H 0.133 0.867 38 H 0.151 0.849 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.014 0.986 47 H 0.087 0.913 48 H 0.057 0.943 49 H 0.034 0.966 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -19.033 -2.736 20.888 28.391 hybrid contribution 2.097 0.514 -0.395 2.194 sum -16.937 -2.222 20.493 26.679 Atomic orbital electron populations 1.21581 0.93540 1.01994 1.02353 1.21711 0.97367 0.96097 1.00899 1.22208 0.76553 0.98450 1.04740 1.47800 1.08001 1.70878 1.05156 1.17224 0.85857 0.76410 0.82743 1.90885 1.14283 1.51160 1.86939 1.21367 0.90470 1.19214 0.94843 1.23694 0.97418 0.96267 0.88184 1.50771 1.04725 1.47959 1.09748 1.22629 1.05309 1.02648 0.70235 1.21774 1.00575 0.97103 0.97661 1.21680 1.03136 1.03146 0.92380 1.81848 1.05420 1.22870 0.96278 1.74721 1.12296 1.10590 1.10252 1.21989 0.93028 0.94744 0.85436 0.86480 1.23269 0.96967 0.97146 1.00705 1.21650 0.97647 0.84745 0.92252 1.44576 1.12250 1.12084 1.65428 1.19376 0.92237 0.94917 1.30076 0.90720 1.25654 1.01068 0.98443 1.00938 1.70056 1.29260 1.16700 1.43927 0.85086 0.78549 0.77642 0.77641 1.20602 1.21633 1.20178 1.21582 0.87062 0.95527 0.95161 0.92318 0.91739 0.92415 0.92683 0.93620 0.87880 0.89180 0.75948 0.86655 0.84904 0.92099 0.91413 0.91262 0.91247 0.91785 0.91489 0.90253 0.98648 0.91311 0.94339 0.96583 0.95761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 71.98 0.71 -1.74 16 2 C -0.12 -2.81 5.74 30.60 0.18 -2.63 16 3 C 0.10 2.57 4.99 86.38 0.43 3.00 16 4 N -0.59 -19.29 2.56 -794.96 -2.03 -21.32 16 5 C 0.59 21.02 6.71 86.69 0.58 21.60 16 6 O -0.56 -24.43 13.25 -4.05 -0.05 -24.49 16 7 C -0.12 -3.39 6.53 40.81 0.27 -3.13 16 8 C 0.10 2.19 11.28 83.85 0.95 3.13 16 9 N -0.35 -6.07 3.69 -347.10 -1.28 -7.35 16 10 C 0.11 0.89 6.54 86.38 0.56 1.46 16 11 C -0.13 -1.13 6.14 30.59 0.19 -0.94 16 12 C -0.15 -0.67 9.91 71.98 0.71 0.04 16 13 N -0.08 -1.94 13.65 37.02 0.51 -1.43 16 14 N -0.20 -5.35 7.57 -50.00 -0.38 -5.73 16 15 C 0.15 5.76 3.43 46.19 0.16 5.92 16 16 H 0.12 3.81 7.80 -2.39 -0.02 3.80 16 17 C -0.14 -6.11 6.41 32.07 0.21 -5.91 16 18 C 0.16 8.76 5.91 86.93 0.51 9.27 16 19 N -0.62 -34.97 3.39 -691.55 -2.35 -37.31 16 20 C -0.24 -14.38 10.27 84.03 0.86 -13.51 16 21 H 0.07 4.37 7.83 -2.91 -0.02 4.35 16 22 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 23 N -0.95 -59.67 10.08 21.65 0.22 -59.45 16 24 Si 0.98 48.09 29.55 68.60 2.03 50.12 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 28 C 0.13 6.24 6.51 86.73 0.56 6.80 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.04 1.20 7.07 -2.39 -0.02 1.18 16 34 H 0.10 2.63 5.27 -2.39 -0.01 2.62 16 35 H 0.09 1.94 7.84 -2.39 -0.02 1.93 16 36 H 0.22 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.13 0.38 8.08 -2.39 -0.02 0.36 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.07 3.20 5.69 -2.39 -0.01 3.18 16 45 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 46 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 47 H 0.07 4.24 5.86 -2.39 -0.01 4.23 16 48 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 49 H 0.02 0.81 6.40 -2.38 -0.02 0.80 16 50 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -79.35 394.88 4.93 -74.42 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.92 Total: 12.86 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 7.35 Total: 19.69 kcal Atomic # 7 Polarization: -127.28 SS G_CDS: -5.31 Total: -132.60 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.05 Total: -24.49 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -79.35 4.93 -74.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267548382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.866 kcal (2) G-P(sol) polarization free energy of solvation -79.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds