Wall clock time and date at job start Tue Mar 31 2020 18:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47348 * 2 1 4 4 N 1.46504 * 109.47489 * 180.02562 * 3 2 1 5 5 C 1.34807 * 126.59545 * 124.99437 * 4 3 2 6 6 C 1.36601 * 106.84055 * 180.02562 * 5 4 3 7 7 C 1.47517 * 125.77218 * 180.02562 * 6 5 4 8 8 O 1.21595 * 120.00005 * 6.75542 * 7 6 5 9 9 N 1.34779 * 119.99711 * 186.76571 * 7 6 5 10 10 C 1.46922 * 120.63481 * 6.35184 * 9 7 6 11 11 C 1.53193 * 108.77545 * 233.59207 * 10 9 7 12 12 C 1.53039 * 109.31072 * 305.36283 * 11 10 9 13 13 C 1.53037 * 109.54236 * 61.36755 * 12 11 10 14 14 H 1.09000 * 109.49534 * 58.61208 * 13 12 11 15 15 C 1.52997 * 109.50276 * 178.68336 * 13 12 11 16 16 H 1.09000 * 109.47001 * 59.99510 * 15 13 12 17 17 C 1.53009 * 109.46965 * 300.00166 * 15 13 12 18 18 N 1.46500 * 109.47155 * 179.97438 * 15 13 12 19 19 C 1.36935 * 119.99634 * 204.99746 * 18 15 13 20 20 H 1.08006 * 120.00373 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00044 * 179.97438 * 19 18 15 22 22 N 1.31621 * 119.99747 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00275 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.46911 * 90.00523 * 23 21 19 25 25 H 1.48503 * 109.46742 * 210.00340 * 23 21 19 26 26 H 1.48498 * 109.46919 * 330.00312 * 23 21 19 27 27 C 1.46928 * 120.62794 * 186.07677 * 9 7 6 28 28 N 1.34406 * 108.45633 * 0.02562 * 6 5 4 29 29 N 1.28765 * 109.52003 * 0.02562 * 28 6 5 30 30 H 1.08999 * 109.47230 * 300.00204 * 1 2 3 31 31 H 1.08998 * 109.46838 * 60.00271 * 1 2 3 32 32 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47230 * 239.99796 * 2 1 3 34 34 H 1.09008 * 109.47361 * 119.99889 * 2 1 3 35 35 H 1.08999 * 109.47122 * 59.99729 * 3 2 1 36 36 H 1.08998 * 109.46929 * 299.99673 * 3 2 1 37 37 H 1.07996 * 126.58206 * 0.02710 * 5 4 3 38 38 H 1.09001 * 109.58424 * 353.37583 * 10 9 7 39 39 H 1.08993 * 109.59067 * 113.66085 * 10 9 7 40 40 H 1.08996 * 109.49953 * 65.31617 * 11 10 9 41 41 H 1.09005 * 109.49999 * 185.41233 * 11 10 9 42 42 H 1.09005 * 109.45793 * 181.38770 * 12 11 10 43 43 H 1.09000 * 109.46067 * 301.35616 * 12 11 10 44 44 H 1.08997 * 109.47165 * 59.99424 * 17 15 13 45 45 H 1.08997 * 109.46835 * 180.02562 * 17 15 13 46 46 H 1.09000 * 109.46726 * 299.99513 * 17 15 13 47 47 H 0.96993 * 119.99806 * 25.00410 * 18 15 13 48 48 H 0.97003 * 120.00239 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.58759 * 246.19913 * 27 9 7 50 50 H 1.08999 * 109.58650 * 6.62301 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.3084 2.0634 -0.8875 6 6 5.5941 1.7981 -0.5102 7 6 6.8100 2.2773 -1.1945 8 8 6.7189 3.0714 -2.1109 9 7 8.0217 1.8349 -0.8040 10 6 8.1418 0.7738 0.2051 11 6 9.0620 1.2631 1.3280 12 6 10.3958 1.7144 0.7287 13 6 10.1556 2.8753 -0.2392 14 1 9.6766 3.6981 0.2915 15 6 11.4931 3.3472 -0.8128 16 1 11.9711 2.5244 -1.3443 17 6 12.4008 3.8137 0.3273 18 7 11.2622 4.4581 -1.7396 19 6 12.1635 4.7153 -2.7379 20 1 13.0444 4.0991 -2.8423 21 6 11.9446 5.7675 -3.6164 22 7 10.8709 6.5182 -3.4895 23 14 13.1737 6.1181 -4.9788 24 1 12.7976 5.3519 -6.1939 25 1 13.1688 7.5705 -5.2881 26 1 14.5317 5.7106 -4.5371 27 6 9.2476 2.4004 -1.3838 28 7 5.5642 1.0266 0.5900 29 7 4.3412 0.7951 0.9200 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 3.9954 2.6567 -1.7339 38 1 7.1574 0.5446 0.6132 39 1 8.5646 -0.1202 -0.2531 40 1 8.5928 2.1009 1.8437 41 1 9.2366 0.4518 2.0348 42 1 11.0615 2.0400 1.5281 43 1 10.8526 0.8829 0.1919 44 1 12.5724 2.9869 1.0165 45 1 13.3535 4.1503 -0.0815 46 1 11.9228 4.6365 0.8588 47 1 10.4711 5.0113 -1.6460 48 1 10.7177 7.2533 -4.1037 49 1 9.7611 1.6372 -1.9685 50 1 8.9931 3.2447 -2.0244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268175167.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:40 Heat of formation + Delta-G solvation = 74.021897 kcal Electronic energy + Delta-G solvation = -29433.545902 eV Core-core repulsion = 25498.427844 eV Total energy + Delta-G solvation = -3935.118058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44740 -39.71560 -37.59294 -36.42643 -35.30513 -33.17830 -32.69180 -31.59946 -31.12045 -29.65292 -28.19959 -27.40349 -25.46521 -24.18689 -23.35356 -23.04211 -22.41314 -21.82450 -20.85608 -19.56892 -19.21592 -17.61451 -17.00571 -16.50608 -16.41839 -15.87093 -15.46457 -15.03851 -14.76059 -14.69601 -14.25513 -14.05534 -13.97581 -13.61780 -13.47238 -13.28361 -12.96616 -12.77952 -12.67795 -12.50855 -12.35185 -12.22681 -12.04897 -11.96294 -11.56619 -11.38467 -11.16421 -10.91846 -10.77594 -10.68593 -10.60611 -10.57773 -10.17331 -10.14992 -10.04435 -9.84528 -9.54219 -9.43810 -9.39930 -8.81262 -8.26941 -6.83970 -5.64572 -2.93290 0.95010 1.61492 1.74836 3.18387 3.39704 3.50659 3.55301 3.57098 3.86794 4.04485 4.17161 4.43223 4.56344 4.65742 4.67411 4.79170 4.79889 4.98599 5.04044 5.13662 5.19679 5.28149 5.31642 5.39296 5.43239 5.49321 5.60287 5.60941 5.68623 5.87045 5.93953 6.00939 6.06004 6.10439 6.16363 6.27114 6.32756 6.37740 6.40562 6.54031 6.59479 6.68199 6.83084 6.93365 7.02248 7.20632 7.61362 7.80245 7.81326 8.37501 8.53250 9.64244 10.22961 10.57601 11.57765 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016587 B = 0.002561 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.645258 B =10928.756783 C =12287.648808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.360 5.360 5 C 0.091 3.909 6 C -0.089 4.089 7 C 0.595 3.405 8 O -0.530 6.530 9 N -0.593 5.593 10 C 0.070 3.930 11 C -0.127 4.127 12 C -0.116 4.116 13 C -0.102 4.102 14 H 0.069 0.931 15 C 0.180 3.820 16 H 0.047 0.953 17 C -0.164 4.164 18 N -0.724 5.724 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.930 5.930 23 Si 0.904 3.096 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.283 1.283 27 C 0.124 3.876 28 N -0.205 5.205 29 N -0.069 5.069 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.205 0.795 38 H 0.135 0.865 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.039 0.961 45 H 0.051 0.949 46 H 0.044 0.956 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.065 0.935 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.877 -15.153 10.694 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C -0.001 4.001 4 N -0.145 5.145 5 C -0.065 4.065 6 C -0.228 4.228 7 C 0.380 3.620 8 O -0.405 6.405 9 N -0.325 5.325 10 C -0.053 4.053 11 C -0.165 4.165 12 C -0.154 4.154 13 C -0.122 4.122 14 H 0.088 0.912 15 C 0.069 3.931 16 H 0.065 0.935 17 C -0.224 4.224 18 N -0.365 5.365 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.578 5.578 23 Si 0.735 3.265 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.209 1.209 27 C 0.002 3.998 28 N -0.078 5.078 29 N -0.048 5.048 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.222 0.778 38 H 0.152 0.848 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.218 0.782 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.796 -15.578 11.312 27.614 hybrid contribution 0.361 1.108 -1.551 1.940 sum -19.435 -14.470 9.761 26.122 Atomic orbital electron populations 1.21705 0.93839 1.02876 1.02392 1.21833 0.96970 0.94570 1.04238 1.22174 0.72539 1.00079 1.05262 1.50498 1.08740 1.35214 1.20090 1.23415 0.90081 0.96987 0.95993 1.21616 0.94816 1.07620 0.98730 1.16843 0.81655 0.80974 0.82508 1.90875 1.85901 1.34743 1.29019 1.47958 1.05484 1.37969 1.41060 1.22712 1.04716 0.88934 0.88985 1.21831 0.96094 1.01142 0.97470 1.21656 0.96700 0.98116 0.98926 1.21829 0.97207 0.97392 0.95753 0.91235 1.20186 0.91375 0.91269 0.90251 0.93524 1.22473 1.01095 0.99750 0.99095 1.42451 1.27222 1.33812 1.33048 1.19202 1.01645 1.10572 1.05285 0.91307 1.24730 0.97894 0.98644 0.99730 1.69672 1.27355 1.21200 1.39590 0.86240 0.80626 0.77097 0.82525 1.21828 1.21933 1.20910 1.21834 0.82700 0.99698 0.95543 1.74162 1.11850 1.10975 1.10770 1.81950 0.93706 1.17307 1.11879 0.92072 0.92174 0.91636 0.90998 0.90021 0.88298 0.87623 0.77789 0.84807 0.92288 0.91829 0.91252 0.91431 0.92028 0.94251 0.92956 0.93654 0.78207 0.93616 0.91655 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.91 37.16 0.37 -0.05 16 2 C -0.14 -0.60 6.14 -26.73 -0.16 -0.77 16 3 C 0.12 0.55 6.54 -4.04 -0.03 0.53 16 4 N -0.36 -3.22 3.69 -61.06 -0.23 -3.44 16 5 C 0.09 0.95 11.28 -16.84 -0.19 0.76 16 6 C -0.09 -1.22 6.74 -83.55 -0.56 -1.79 16 7 C 0.60 10.20 7.68 -12.48 -0.10 10.10 16 8 O -0.53 -10.90 16.31 5.28 0.09 -10.82 16 9 N -0.59 -9.69 2.97 -173.74 -0.52 -10.20 16 10 C 0.07 0.94 6.31 -3.71 -0.02 0.91 16 11 C -0.13 -1.58 6.08 -26.61 -0.16 -1.75 16 12 C -0.12 -1.60 4.85 -26.69 -0.13 -1.72 16 13 C -0.10 -1.76 1.99 -90.28 -0.18 -1.94 16 14 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 15 C 0.18 3.61 2.47 -67.93 -0.17 3.45 16 16 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 17 C -0.16 -3.03 9.14 37.16 0.34 -2.69 16 18 N -0.72 -18.43 4.53 -53.42 -0.24 -18.67 16 19 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 20 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 23 Si 0.90 22.99 29.55 -169.99 -5.02 17.97 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 27 C 0.12 2.28 5.48 -3.48 -0.02 2.26 16 28 N -0.20 -2.72 8.71 32.85 0.29 -2.43 16 29 N -0.07 -0.81 13.64 60.35 0.82 0.01 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.11 0.24 8.08 -51.93 -0.42 -0.18 16 37 H 0.21 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.14 1.77 3.67 -120.67 -0.44 1.33 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.88 6.36 -51.93 -0.33 0.55 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.04 0.60 6.40 -51.93 -0.33 0.27 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.38 10.61 7.63 -40.82 -0.31 10.30 16 48 H 0.25 7.68 8.31 -40.82 -0.34 7.35 16 49 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.11 2.40 6.58 -51.93 -0.34 2.06 16 LS Contribution 398.82 15.07 6.01 6.01 Total: -1.00 -34.64 398.82 -7.82 -42.46 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -8.49 Total: 7.33 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.26 Total: 0.01 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: 0.85 Total: -62.97 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.64 -7.82 -42.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268175167.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.480 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds