Wall clock time and date at job start Tue Mar 31 2020 18:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47348 * 2 1 4 4 N 1.46504 * 109.47489 * 180.02562 * 3 2 1 5 5 C 1.34807 * 126.59545 * 124.99437 * 4 3 2 6 6 C 1.36601 * 106.84055 * 180.02562 * 5 4 3 7 7 C 1.47517 * 125.77218 * 180.02562 * 6 5 4 8 8 O 1.21595 * 120.00005 * 6.75542 * 7 6 5 9 9 N 1.34779 * 119.99711 * 186.76571 * 7 6 5 10 10 C 1.46922 * 120.63481 * 6.35184 * 9 7 6 11 11 C 1.53193 * 108.77545 * 233.59207 * 10 9 7 12 12 C 1.53039 * 109.31072 * 305.36283 * 11 10 9 13 13 C 1.53037 * 109.54236 * 61.36755 * 12 11 10 14 14 H 1.09000 * 109.49534 * 58.61208 * 13 12 11 15 15 C 1.52997 * 109.50276 * 178.68336 * 13 12 11 16 16 H 1.09000 * 109.47001 * 59.99510 * 15 13 12 17 17 C 1.53009 * 109.46965 * 300.00166 * 15 13 12 18 18 N 1.46500 * 109.47155 * 179.97438 * 15 13 12 19 19 C 1.36935 * 119.99634 * 204.99746 * 18 15 13 20 20 H 1.08006 * 120.00373 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00044 * 179.97438 * 19 18 15 22 22 N 1.31621 * 119.99747 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00275 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.46911 * 90.00523 * 23 21 19 25 25 H 1.48503 * 109.46742 * 210.00340 * 23 21 19 26 26 H 1.48498 * 109.46919 * 330.00312 * 23 21 19 27 27 C 1.46928 * 120.62794 * 186.07677 * 9 7 6 28 28 N 1.34406 * 108.45633 * 0.02562 * 6 5 4 29 29 N 1.28765 * 109.52003 * 0.02562 * 28 6 5 30 30 H 1.08999 * 109.47230 * 300.00204 * 1 2 3 31 31 H 1.08998 * 109.46838 * 60.00271 * 1 2 3 32 32 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47230 * 239.99796 * 2 1 3 34 34 H 1.09008 * 109.47361 * 119.99889 * 2 1 3 35 35 H 1.08999 * 109.47122 * 59.99729 * 3 2 1 36 36 H 1.08998 * 109.46929 * 299.99673 * 3 2 1 37 37 H 1.07996 * 126.58206 * 0.02710 * 5 4 3 38 38 H 1.09001 * 109.58424 * 353.37583 * 10 9 7 39 39 H 1.08993 * 109.59067 * 113.66085 * 10 9 7 40 40 H 1.08996 * 109.49953 * 65.31617 * 11 10 9 41 41 H 1.09005 * 109.49999 * 185.41233 * 11 10 9 42 42 H 1.09005 * 109.45793 * 181.38770 * 12 11 10 43 43 H 1.09000 * 109.46067 * 301.35616 * 12 11 10 44 44 H 1.08997 * 109.47165 * 59.99424 * 17 15 13 45 45 H 1.08997 * 109.46835 * 180.02562 * 17 15 13 46 46 H 1.09000 * 109.46726 * 299.99513 * 17 15 13 47 47 H 0.96993 * 119.99806 * 25.00410 * 18 15 13 48 48 H 0.97003 * 120.00239 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.58759 * 246.19913 * 27 9 7 50 50 H 1.08999 * 109.58650 * 6.62301 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.3084 2.0634 -0.8875 6 6 5.5941 1.7981 -0.5102 7 6 6.8100 2.2773 -1.1945 8 8 6.7189 3.0714 -2.1109 9 7 8.0217 1.8349 -0.8040 10 6 8.1418 0.7738 0.2051 11 6 9.0620 1.2631 1.3280 12 6 10.3958 1.7144 0.7287 13 6 10.1556 2.8753 -0.2392 14 1 9.6766 3.6981 0.2915 15 6 11.4931 3.3472 -0.8128 16 1 11.9711 2.5244 -1.3443 17 6 12.4008 3.8137 0.3273 18 7 11.2622 4.4581 -1.7396 19 6 12.1635 4.7153 -2.7379 20 1 13.0444 4.0991 -2.8423 21 6 11.9446 5.7675 -3.6164 22 7 10.8709 6.5182 -3.4895 23 14 13.1737 6.1181 -4.9788 24 1 12.7976 5.3519 -6.1939 25 1 13.1688 7.5705 -5.2881 26 1 14.5317 5.7106 -4.5371 27 6 9.2476 2.4004 -1.3838 28 7 5.5642 1.0266 0.5900 29 7 4.3412 0.7951 0.9200 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 3.9954 2.6567 -1.7339 38 1 7.1574 0.5446 0.6132 39 1 8.5646 -0.1202 -0.2531 40 1 8.5928 2.1009 1.8437 41 1 9.2366 0.4518 2.0348 42 1 11.0615 2.0400 1.5281 43 1 10.8526 0.8829 0.1919 44 1 12.5724 2.9869 1.0165 45 1 13.3535 4.1503 -0.0815 46 1 11.9228 4.6365 0.8588 47 1 10.4711 5.0113 -1.6460 48 1 10.7177 7.2533 -4.1037 49 1 9.7611 1.6372 -1.9685 50 1 8.9931 3.2447 -2.0244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268175167.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:39 Heat of formation + Delta-G solvation = 51.089353 kcal Electronic energy + Delta-G solvation = -29434.540332 eV Core-core repulsion = 25498.427844 eV Total energy + Delta-G solvation = -3936.112488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.35161 -41.01886 -39.02504 -37.11131 -36.79287 -34.65160 -33.62400 -33.09395 -32.17650 -31.20279 -29.81090 -28.00638 -26.75543 -25.94371 -24.54136 -24.08706 -23.44447 -22.53507 -22.04385 -21.06170 -20.37874 -19.13495 -18.52620 -17.53152 -17.22855 -17.01966 -16.72581 -16.23705 -15.99623 -15.78129 -15.57912 -15.46512 -15.22682 -14.96332 -14.50990 -14.29225 -14.20160 -14.07360 -13.81373 -13.63248 -13.46242 -13.17310 -12.99433 -12.95692 -12.77838 -12.65798 -12.46670 -12.36025 -12.28347 -12.10621 -11.91697 -11.75765 -11.69145 -11.50225 -11.40258 -11.28134 -11.19011 -10.94193 -10.69065 -10.39871 -9.58556 -8.95559 -7.88605 -5.16872 0.10827 0.54022 1.05540 1.46569 1.49186 1.57021 1.95396 2.17207 2.58835 3.06682 3.29581 3.44400 3.66064 3.78261 3.83077 3.90620 3.93067 4.00936 4.13282 4.14146 4.21219 4.24389 4.33856 4.40006 4.48471 4.53556 4.61281 4.63740 4.78769 4.80669 4.85449 4.89820 4.95233 5.05752 5.10421 5.12256 5.15767 5.18412 5.23949 5.31195 5.34022 5.41214 5.47661 5.52193 5.58157 5.63026 5.71141 6.32470 6.36790 6.82151 7.09858 7.37668 8.15468 8.37874 9.35027 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016587 B = 0.002561 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.645258 B =10928.756783 C =12287.648808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.344 5.344 5 C 0.108 3.892 6 C -0.117 4.117 7 C 0.589 3.411 8 O -0.578 6.578 9 N -0.594 5.594 10 C 0.067 3.933 11 C -0.120 4.120 12 C -0.108 4.108 13 C -0.089 4.089 14 H 0.050 0.950 15 C 0.173 3.827 16 H 0.048 0.952 17 C -0.153 4.153 18 N -0.736 5.736 19 C -0.231 4.231 20 H 0.077 0.923 21 C -0.082 4.082 22 N -0.971 5.971 23 Si 0.970 3.030 24 H -0.290 1.290 25 H -0.298 1.298 26 H -0.267 1.267 27 C 0.131 3.869 28 N -0.215 5.215 29 N -0.078 5.078 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.230 0.770 38 H 0.141 0.859 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.368 0.632 48 H 0.248 0.752 49 H 0.066 0.934 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.477 -17.121 12.085 29.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.009 4.009 4 N -0.129 5.129 5 C -0.050 4.050 6 C -0.256 4.256 7 C 0.376 3.624 8 O -0.458 6.458 9 N -0.324 5.324 10 C -0.056 4.056 11 C -0.158 4.158 12 C -0.146 4.146 13 C -0.109 4.109 14 H 0.069 0.931 15 C 0.065 3.935 16 H 0.066 0.934 17 C -0.213 4.213 18 N -0.376 5.376 19 C -0.363 4.363 20 H 0.095 0.905 21 C -0.274 4.274 22 N -0.623 5.623 23 Si 0.800 3.200 24 H -0.217 1.217 25 H -0.225 1.225 26 H -0.192 1.192 27 C 0.009 3.991 28 N -0.087 5.087 29 N -0.058 5.058 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.247 0.753 38 H 0.158 0.842 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.199 0.801 48 H 0.056 0.944 49 H 0.084 0.916 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.386 -17.629 12.774 29.826 hybrid contribution 0.417 1.626 -1.921 2.551 sum -19.969 -16.003 10.853 27.797 Atomic orbital electron populations 1.21681 0.92341 1.03116 1.03249 1.21782 0.98118 0.94101 1.03143 1.22695 0.69781 1.00805 1.07660 1.50786 1.10041 1.33485 1.18566 1.23755 0.89138 0.95955 0.96129 1.21261 0.94548 1.09849 0.99952 1.17316 0.82756 0.80253 0.82032 1.90837 1.86723 1.36949 1.31272 1.48047 1.04639 1.38356 1.41385 1.22957 1.05688 0.88330 0.88585 1.21811 0.94749 1.01874 0.97397 1.21633 0.97979 0.96675 0.98341 1.21673 0.95055 0.98367 0.95784 0.93118 1.20462 0.93351 0.89637 0.90075 0.93369 1.22316 0.99353 1.00867 0.98755 1.42669 1.26207 1.34958 1.33757 1.19614 1.01699 1.09770 1.05187 0.90471 1.25565 0.99955 0.99207 1.02642 1.69855 1.29595 1.22027 1.40795 0.85174 0.79039 0.76306 0.79484 1.21725 1.22530 1.19202 1.21510 0.83976 0.98032 0.95592 1.74070 1.12785 1.11215 1.10678 1.81863 0.93567 1.17727 1.12652 0.91376 0.91146 0.91762 0.91814 0.91450 0.86647 0.84531 0.75320 0.84215 0.90925 0.92852 0.87858 0.89854 0.90682 0.90192 0.94580 0.94507 0.80054 0.94361 0.91586 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 9.91 71.98 0.71 0.24 16 2 C -0.13 -0.91 6.14 30.59 0.19 -0.72 16 3 C 0.11 0.71 6.54 86.38 0.56 1.27 16 4 N -0.34 -5.51 3.69 -347.10 -1.28 -6.79 16 5 C 0.11 2.12 11.28 83.85 0.95 3.07 16 6 C -0.12 -3.22 6.74 40.81 0.28 -2.95 16 7 C 0.59 21.02 7.68 86.69 0.67 21.68 16 8 O -0.58 -25.35 16.31 -4.02 -0.07 -25.41 16 9 N -0.59 -19.83 2.97 -821.85 -2.44 -22.27 16 10 C 0.07 1.69 6.31 86.36 0.55 2.24 16 11 C -0.12 -2.70 6.08 30.67 0.19 -2.51 16 12 C -0.11 -2.71 4.85 30.62 0.15 -2.56 16 13 C -0.09 -3.08 1.99 -10.57 -0.02 -3.10 16 14 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 15 C 0.17 6.97 2.47 44.99 0.11 7.08 16 16 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 17 C -0.15 -5.46 9.14 71.99 0.66 -4.80 16 18 N -0.74 -38.72 4.53 -322.93 -1.46 -40.18 16 19 C -0.23 -13.23 9.93 84.03 0.83 -12.39 16 20 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 22 N -0.97 -62.92 13.06 21.65 0.28 -62.64 16 23 Si 0.97 48.23 29.55 68.60 2.03 50.25 16 24 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 26 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 27 C 0.13 5.05 5.48 86.51 0.47 5.52 16 28 N -0.21 -5.54 8.71 -49.99 -0.44 -5.97 16 29 N -0.08 -1.74 13.64 37.02 0.51 -1.24 16 30 H 0.07 0.14 8.14 -2.39 -0.02 0.13 16 31 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.14 0.11 8.08 -2.39 -0.02 0.09 16 37 H 0.23 3.20 8.06 -2.91 -0.02 3.17 16 38 H 0.14 3.53 3.67 -91.33 -0.33 3.19 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.08 1.86 6.36 -2.38 -0.02 1.85 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.08 2.19 6.40 -2.39 -0.02 2.18 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 47 H 0.37 21.50 7.63 -92.71 -0.71 20.79 16 48 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 49 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 50 H 0.06 2.77 6.58 -2.39 -0.02 2.76 16 Total: -1.00 -79.48 398.82 3.79 -75.69 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.10 Total: 30.96 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 6.76 Total: 7.61 kcal Atomic # 7 Polarization: -134.26 SS G_CDS: -4.83 Total: -139.09 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.07 Total: -25.41 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.25 kcal Total: -79.48 3.79 -75.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268175167.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.775 kcal (2) G-P(sol) polarization free energy of solvation -79.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds