Wall clock time and date at job start Tue Mar 31 2020 19:01:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53004 * 109.46924 * 2 1
4 4 N 1.46497 * 109.46743 * 180.02562 * 3 2 1
5 5 C 1.34816 * 126.59731 * 125.24607 * 4 3 2
6 6 C 1.36599 * 106.84053 * 180.13042 * 5 4 3
7 7 C 1.47524 * 125.77080 * 179.90075 * 6 5 4
8 8 O 1.21590 * 119.99699 * 359.70859 * 7 6 5
9 9 N 1.34773 * 120.00009 * 179.71319 * 7 6 5
10 10 C 1.46500 * 119.99899 * 179.72457 * 9 7 6
11 11 C 1.53001 * 109.46862 * 180.02562 * 10 9 7
12 12 C 1.52998 * 109.49660 * 299.92993 * 11 10 9
13 13 C 1.53045 * 109.49474 * 179.83621 * 11 10 9
14 14 C 1.53038 * 109.53764 * 178.68181 * 13 11 10
15 15 C 1.53195 * 109.31317 * 61.36273 * 14 13 11
16 16 N 1.46923 * 108.77448 * 305.36680 * 15 14 13
17 17 C 1.36942 * 120.63060 * 233.62567 * 16 15 14
18 18 H 1.08002 * 119.99939 * 152.61679 * 17 16 15
19 19 C 1.38816 * 120.00007 * 332.62471 * 17 16 15
20 20 N 1.31618 * 120.00074 * 159.36169 * 19 17 16
21 21 Si 1.86806 * 119.99833 * 339.35740 * 19 17 16
22 22 H 1.48499 * 109.46757 * 92.93345 * 21 19 17
23 23 H 1.48496 * 109.47027 * 212.93633 * 21 19 17
24 24 H 1.48500 * 109.46838 * 332.93756 * 21 19 17
25 25 C 1.46927 * 118.74225 * 53.60698 * 16 15 14
26 26 N 1.34407 * 108.45490 * 359.62857 * 6 5 4
27 27 N 1.28754 * 109.52312 * 0.23265 * 26 6 5
28 28 H 1.09008 * 109.47195 * 300.00090 * 1 2 3
29 29 H 1.09004 * 109.47419 * 60.00172 * 1 2 3
30 30 H 1.08999 * 109.47160 * 180.02562 * 1 2 3
31 31 H 1.08992 * 109.46832 * 240.00037 * 2 1 3
32 32 H 1.08999 * 109.46977 * 119.99849 * 2 1 3
33 33 H 1.08994 * 109.47163 * 59.99829 * 3 2 1
34 34 H 1.08999 * 109.47171 * 299.99731 * 3 2 1
35 35 H 1.07997 * 126.58034 * 359.97438 * 5 4 3
36 36 H 0.97007 * 120.00087 * 359.97438 * 9 7 6
37 37 H 1.09003 * 109.46624 * 299.99721 * 10 9 7
38 38 H 1.08993 * 109.46990 * 59.99651 * 10 9 7
39 39 H 1.09006 * 109.47361 * 60.00302 * 12 11 10
40 40 H 1.09000 * 109.47308 * 180.02562 * 12 11 10
41 41 H 1.09001 * 109.47382 * 300.00401 * 12 11 10
42 42 H 1.08999 * 109.45834 * 298.69925 * 13 11 10
43 43 H 1.08999 * 109.46057 * 58.66173 * 13 11 10
44 44 H 1.09004 * 109.49685 * 301.41391 * 14 13 11
45 45 H 1.08999 * 109.49971 * 181.31862 * 14 13 11
46 46 H 1.09000 * 109.58636 * 185.57538 * 15 14 13
47 47 H 1.08996 * 109.58406 * 65.15268 * 15 14 13
48 48 H 0.96997 * 119.99908 * 179.97438 * 20 19 17
49 49 H 1.08990 * 109.58785 * 186.60205 * 25 16 15
50 50 H 1.09000 * 109.58159 * 66.17878 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 3.5049 1.4425 -0.0006
5 6 4.3083 2.0672 -0.8848
6 6 5.5941 1.7982 -0.5100
7 6 6.8100 2.2776 -1.1942
8 8 6.7147 2.9728 -2.1872
9 7 8.0263 1.9448 -0.7187
10 6 9.2338 2.4159 -1.4016
11 6 10.4710 1.9003 -0.6638
12 6 10.4633 2.4237 0.7738
13 6 11.7328 2.3886 -1.3791
14 6 12.9708 1.9009 -0.6233
15 6 12.9851 0.3690 -0.6093
16 7 11.7118 -0.1107 -0.0550
17 6 11.6949 -0.9875 0.9967
18 1 10.8532 -1.0031 1.6733
19 6 12.7597 -1.8562 1.1934
20 7 12.9578 -2.3972 2.3768
21 14 13.9113 -2.2574 -0.2217
22 1 15.0689 -1.3275 -0.1967
23 1 14.3956 -3.6545 -0.0849
24 1 13.1849 -2.1090 -1.5083
25 6 10.4569 0.3685 -0.6503
26 7 5.5640 1.0279 0.5910
27 7 4.3412 0.7971 0.9214
28 1 -0.3634 0.5139 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0276 0.0005
31 1 1.8933 -0.5138 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 1.6766 1.9564 0.8899
34 1 1.6767 1.9564 -0.8900
35 1 3.9955 2.6636 -1.7291
36 1 8.1023 1.3904 0.0737
37 1 9.2405 2.0433 -2.4260
38 1 9.2439 3.5057 -1.4114
39 1 9.5650 2.0743 1.2830
40 1 11.3450 2.0565 1.2990
41 1 10.4744 3.5136 0.7638
42 1 11.7493 1.9950 -2.3954
43 1 11.7330 3.4781 -1.4118
44 1 12.9424 2.2738 0.4006
45 1 13.8687 2.2686 -1.1200
46 1 13.8095 0.0170 0.0109
47 1 13.1048 -0.0045 -1.6262
48 1 13.7016 -3.0044 2.5140
49 1 9.6132 0.0160 -0.0572
50 1 10.3705 -0.0052 -1.6706
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001270998254.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:01:48
Heat of formation + Delta-G solvation = 72.041559 kcal
Electronic energy + Delta-G solvation = -29367.567350 eV
Core-core repulsion = 25432.363418 eV
Total energy + Delta-G solvation = -3935.203932 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.37334 -39.70131 -38.42432 -36.37130 -35.07801 -33.28136 -32.88183 -31.44948
-30.88360 -30.65824 -27.60722 -26.70200 -26.04313 -25.24155 -23.57253 -22.98798
-21.97435 -21.80906 -21.10715 -20.21799 -18.52051 -17.84438 -16.79449 -16.50160
-16.32067 -15.93297 -15.55471 -15.27644 -15.05068 -14.89026 -14.20909 -14.06968
-13.99069 -13.89543 -13.61119 -13.41208 -13.18724 -12.68884 -12.64347 -12.51829
-12.37925 -12.25651 -12.02301 -11.87280 -11.55334 -11.49366 -11.28747 -11.21537
-11.13802 -10.62088 -10.57369 -10.47754 -10.41383 -10.13020 -9.95371 -9.78177
-9.54935 -9.48053 -9.37442 -8.88741 -8.55639 -6.91184 -5.89906 -3.25188
0.94526 1.63281 1.76726 3.22726 3.30377 3.35769 3.52380 3.55671
3.88542 4.06001 4.19118 4.46661 4.57665 4.58153 4.67600 4.77754
4.81842 4.87533 5.01116 5.15209 5.16053 5.23046 5.25496 5.43007
5.45043 5.46573 5.61654 5.65850 5.67294 5.77646 5.84549 5.96668
6.01073 6.08254 6.11351 6.28135 6.32782 6.38999 6.43154 6.52897
6.63951 6.68799 6.70252 6.77684 6.83929 7.07744 7.52890 7.84722
8.01215 8.23195 8.38008 8.99394 9.77437 10.15233 11.26051
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.015059 B = 0.002612 C = 0.002334
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1858.850126 B =10716.262727 C =11993.556418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.139 4.139
3 C 0.121 3.879
4 N -0.363 5.363
5 C 0.090 3.910
6 C -0.100 4.100
7 C 0.603 3.397
8 O -0.548 6.548
9 N -0.705 5.705
10 C 0.134 3.866
11 C -0.093 4.093
12 C -0.133 4.133
13 C -0.095 4.095
14 C -0.136 4.136
15 C 0.124 3.876
16 N -0.602 5.602
17 C -0.256 4.256
18 H 0.086 0.914
19 C 0.023 3.977
20 N -0.909 5.909
21 Si 0.882 3.118
22 H -0.290 1.290
23 H -0.305 1.305
24 H -0.271 1.271
25 C 0.160 3.840
26 N -0.199 5.199
27 N -0.061 5.061
28 H 0.060 0.940
29 H 0.058 0.942
30 H 0.065 0.935
31 H 0.072 0.928
32 H 0.083 0.917
33 H 0.098 0.902
34 H 0.104 0.896
35 H 0.203 0.797
36 H 0.413 0.587
37 H 0.068 0.932
38 H 0.067 0.933
39 H 0.048 0.952
40 H 0.078 0.922
41 H 0.041 0.959
42 H 0.057 0.943
43 H 0.054 0.946
44 H 0.069 0.931
45 H 0.053 0.947
46 H 0.071 0.929
47 H 0.023 0.977
48 H 0.262 0.738
49 H 0.062 0.938
50 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.645 11.430 -7.494 25.599
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.177 4.177
3 C 0.000 4.000
4 N -0.148 5.148
5 C -0.067 4.067
6 C -0.239 4.239
7 C 0.387 3.613
8 O -0.426 6.426
9 N -0.356 5.356
10 C 0.010 3.990
11 C -0.095 4.095
12 C -0.190 4.190
13 C -0.133 4.133
14 C -0.175 4.175
15 C -0.001 4.001
16 N -0.325 5.325
17 C -0.384 4.384
18 H 0.104 0.896
19 C -0.176 4.176
20 N -0.552 5.552
21 Si 0.713 3.287
22 H -0.217 1.217
23 H -0.234 1.234
24 H -0.196 1.196
25 C 0.034 3.966
26 N -0.073 5.073
27 N -0.041 5.041
28 H 0.079 0.921
29 H 0.077 0.923
30 H 0.084 0.916
31 H 0.090 0.910
32 H 0.101 0.899
33 H 0.117 0.883
34 H 0.122 0.878
35 H 0.220 0.780
36 H 0.250 0.750
37 H 0.086 0.914
38 H 0.085 0.915
39 H 0.067 0.933
40 H 0.097 0.903
41 H 0.060 0.940
42 H 0.076 0.924
43 H 0.073 0.927
44 H 0.087 0.913
45 H 0.071 0.929
46 H 0.089 0.911
47 H 0.041 0.959
48 H 0.071 0.929
49 H 0.080 0.920
50 H 0.041 0.959
Dipole moment (debyes) X Y Z Total
from point charges -21.590 10.906 -6.823 25.132
hybrid contribution 0.552 0.014 -1.263 1.379
sum -21.038 10.920 -8.087 25.044
Atomic orbital electron populations
1.21705 0.93851 1.02932 1.02273 1.21842 0.96941 0.94532 1.04430
1.22151 0.72578 1.00153 1.05077 1.50602 1.08830 1.35112 1.20281
1.23354 0.90189 0.97136 0.96007 1.21532 0.94618 1.08367 0.99410
1.16734 0.81872 0.79721 0.83015 1.90783 1.86833 1.39148 1.25812
1.45913 1.04945 1.52969 1.31784 1.21485 0.82616 0.98904 0.96011
1.21328 0.93051 0.99065 0.96075 1.21792 1.03118 0.98881 0.95190
1.21359 0.94087 0.99264 0.98612 1.22055 0.96278 0.98520 1.00696
1.21347 0.89928 0.91975 0.96892 1.44291 0.99267 1.51116 1.37788
1.18917 1.06929 1.11150 1.01394 0.89611 1.25267 0.98247 0.97599
0.96489 1.69838 1.31009 1.33670 1.20659 0.86962 0.80753 0.76288
0.84674 1.21742 1.23363 1.19650 1.20942 0.89767 0.89543 0.96375
1.74720 1.12832 1.09717 1.10016 1.82019 0.93348 1.17167 1.11597
0.92084 0.92271 0.91583 0.90961 0.89869 0.88334 0.87767 0.77983
0.75002 0.91402 0.91493 0.93323 0.90323 0.93971 0.92397 0.92744
0.91254 0.92853 0.91051 0.95890 0.92866 0.92005 0.95896
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.47 9.91 37.16 0.37 -0.10 16
2 C -0.14 -0.69 6.14 -26.73 -0.16 -0.86 16
3 C 0.12 0.56 6.54 -4.04 -0.03 0.54 16
4 N -0.36 -3.30 3.69 -61.06 -0.23 -3.53 16
5 C 0.09 0.87 11.27 -16.83 -0.19 0.68 16
6 C -0.10 -1.31 6.99 -83.55 -0.58 -1.90 16
7 C 0.60 8.83 7.82 -12.48 -0.10 8.73 16
8 O -0.55 -8.96 16.86 5.29 0.09 -8.87 16
9 N -0.70 -10.22 4.99 -61.35 -0.31 -10.52 16
10 C 0.13 1.90 4.57 -4.04 -0.02 1.89 16
11 C -0.09 -1.47 0.53 -154.39 -0.08 -1.55 16
12 C -0.13 -2.13 7.81 37.16 0.29 -1.84 16
13 C -0.10 -1.44 4.71 -26.69 -0.13 -1.56 16
14 C -0.14 -2.35 5.74 -26.61 -0.15 -2.51 16
15 C 0.12 2.68 4.20 -3.71 -0.02 2.66 16
16 N -0.60 -13.97 2.21 -172.33 -0.38 -14.35 16
17 C -0.26 -7.05 10.04 -15.06 -0.15 -7.20 16
18 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16
19 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16
20 N -0.91 -27.94 13.97 55.49 0.78 -27.17 16
21 Si 0.88 22.60 24.35 -169.99 -4.14 18.46 16
22 H -0.29 -7.15 6.62 56.52 0.37 -6.78 16
23 H -0.31 -8.00 7.11 56.52 0.40 -7.60 16
24 H -0.27 -6.86 6.64 56.52 0.38 -6.49 16
25 C 0.16 3.10 4.93 -3.71 -0.02 3.08 16
26 N -0.20 -2.90 12.04 32.85 0.40 -2.50 16
27 N -0.06 -0.79 13.65 60.35 0.82 0.03 16
28 H 0.06 0.16 8.14 -51.92 -0.42 -0.26 16
29 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16
30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16
31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16
32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
33 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16
34 H 0.10 0.20 8.08 -51.93 -0.42 -0.22 16
35 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16
36 H 0.41 6.14 5.91 -40.82 -0.24 5.90 16
37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
39 H 0.05 0.77 6.87 -51.93 -0.36 0.42 16
40 H 0.08 1.48 5.97 -51.93 -0.31 1.17 16
41 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16
42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
43 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
44 H 0.07 1.24 6.34 -51.93 -0.33 0.91 16
45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
46 H 0.07 1.70 4.49 -51.93 -0.23 1.47 16
47 H 0.02 0.50 7.08 -51.93 -0.37 0.13 16
48 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
49 H 0.06 1.22 6.83 -51.93 -0.35 0.86 16
50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
LS Contribution 390.39 15.07 5.88 5.88
Total: -1.00 -33.96 390.39 -6.29 -40.25
By element:
Atomic # 1 Polarization: 9.85 SS G_CDS: -8.14 Total: 1.70 kcal
Atomic # 6 Polarization: 1.68 SS G_CDS: -1.06 Total: 0.62 kcal
Atomic # 7 Polarization: -59.12 SS G_CDS: 1.08 Total: -58.04 kcal
Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal
Atomic # 14 Polarization: 22.60 SS G_CDS: -4.14 Total: 18.46 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -33.96 -6.29 -40.25 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001270998254.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.288 kcal
(2) G-P(sol) polarization free energy of solvation -33.961 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.327 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.042 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds