Wall clock time and date at job start Tue Mar 31 2020 19:01:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53004 * 109.46924 * 2 1
4 4 N 1.46497 * 109.46743 * 180.02562 * 3 2 1
5 5 C 1.34816 * 126.59731 * 125.24607 * 4 3 2
6 6 C 1.36599 * 106.84053 * 180.13042 * 5 4 3
7 7 C 1.47524 * 125.77080 * 179.90075 * 6 5 4
8 8 O 1.21590 * 119.99699 * 359.70859 * 7 6 5
9 9 N 1.34773 * 120.00009 * 179.71319 * 7 6 5
10 10 C 1.46500 * 119.99899 * 179.72457 * 9 7 6
11 11 C 1.53001 * 109.46862 * 180.02562 * 10 9 7
12 12 C 1.52998 * 109.49660 * 299.92993 * 11 10 9
13 13 C 1.53045 * 109.49474 * 179.83621 * 11 10 9
14 14 C 1.53038 * 109.53764 * 178.68181 * 13 11 10
15 15 C 1.53195 * 109.31317 * 61.36273 * 14 13 11
16 16 N 1.46923 * 108.77448 * 305.36680 * 15 14 13
17 17 C 1.36942 * 120.63060 * 233.62567 * 16 15 14
18 18 H 1.08002 * 119.99939 * 152.61679 * 17 16 15
19 19 C 1.38816 * 120.00007 * 332.62471 * 17 16 15
20 20 N 1.31618 * 120.00074 * 159.36169 * 19 17 16
21 21 Si 1.86806 * 119.99833 * 339.35740 * 19 17 16
22 22 H 1.48499 * 109.46757 * 92.93345 * 21 19 17
23 23 H 1.48496 * 109.47027 * 212.93633 * 21 19 17
24 24 H 1.48500 * 109.46838 * 332.93756 * 21 19 17
25 25 C 1.46927 * 118.74225 * 53.60698 * 16 15 14
26 26 N 1.34407 * 108.45490 * 359.62857 * 6 5 4
27 27 N 1.28754 * 109.52312 * 0.23265 * 26 6 5
28 28 H 1.09008 * 109.47195 * 300.00090 * 1 2 3
29 29 H 1.09004 * 109.47419 * 60.00172 * 1 2 3
30 30 H 1.08999 * 109.47160 * 180.02562 * 1 2 3
31 31 H 1.08992 * 109.46832 * 240.00037 * 2 1 3
32 32 H 1.08999 * 109.46977 * 119.99849 * 2 1 3
33 33 H 1.08994 * 109.47163 * 59.99829 * 3 2 1
34 34 H 1.08999 * 109.47171 * 299.99731 * 3 2 1
35 35 H 1.07997 * 126.58034 * 359.97438 * 5 4 3
36 36 H 0.97007 * 120.00087 * 359.97438 * 9 7 6
37 37 H 1.09003 * 109.46624 * 299.99721 * 10 9 7
38 38 H 1.08993 * 109.46990 * 59.99651 * 10 9 7
39 39 H 1.09006 * 109.47361 * 60.00302 * 12 11 10
40 40 H 1.09000 * 109.47308 * 180.02562 * 12 11 10
41 41 H 1.09001 * 109.47382 * 300.00401 * 12 11 10
42 42 H 1.08999 * 109.45834 * 298.69925 * 13 11 10
43 43 H 1.08999 * 109.46057 * 58.66173 * 13 11 10
44 44 H 1.09004 * 109.49685 * 301.41391 * 14 13 11
45 45 H 1.08999 * 109.49971 * 181.31862 * 14 13 11
46 46 H 1.09000 * 109.58636 * 185.57538 * 15 14 13
47 47 H 1.08996 * 109.58406 * 65.15268 * 15 14 13
48 48 H 0.96997 * 119.99908 * 179.97438 * 20 19 17
49 49 H 1.08990 * 109.58785 * 186.60205 * 25 16 15
50 50 H 1.09000 * 109.58159 * 66.17878 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 3.5049 1.4425 -0.0006
5 6 4.3083 2.0672 -0.8848
6 6 5.5941 1.7982 -0.5100
7 6 6.8100 2.2776 -1.1942
8 8 6.7147 2.9728 -2.1872
9 7 8.0263 1.9448 -0.7187
10 6 9.2338 2.4159 -1.4016
11 6 10.4710 1.9003 -0.6638
12 6 10.4633 2.4237 0.7738
13 6 11.7328 2.3886 -1.3791
14 6 12.9708 1.9009 -0.6233
15 6 12.9851 0.3690 -0.6093
16 7 11.7118 -0.1107 -0.0550
17 6 11.6949 -0.9875 0.9967
18 1 10.8532 -1.0031 1.6733
19 6 12.7597 -1.8562 1.1934
20 7 12.9578 -2.3972 2.3768
21 14 13.9113 -2.2574 -0.2217
22 1 15.0689 -1.3275 -0.1967
23 1 14.3956 -3.6545 -0.0849
24 1 13.1849 -2.1090 -1.5083
25 6 10.4569 0.3685 -0.6503
26 7 5.5640 1.0279 0.5910
27 7 4.3412 0.7971 0.9214
28 1 -0.3634 0.5139 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0276 0.0005
31 1 1.8933 -0.5138 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 1.6766 1.9564 0.8899
34 1 1.6767 1.9564 -0.8900
35 1 3.9955 2.6636 -1.7291
36 1 8.1023 1.3904 0.0737
37 1 9.2405 2.0433 -2.4260
38 1 9.2439 3.5057 -1.4114
39 1 9.5650 2.0743 1.2830
40 1 11.3450 2.0565 1.2990
41 1 10.4744 3.5136 0.7638
42 1 11.7493 1.9950 -2.3954
43 1 11.7330 3.4781 -1.4118
44 1 12.9424 2.2738 0.4006
45 1 13.8687 2.2686 -1.1200
46 1 13.8095 0.0170 0.0109
47 1 13.1048 -0.0045 -1.6262
48 1 13.7016 -3.0044 2.5140
49 1 9.6132 0.0160 -0.0572
50 1 10.3705 -0.0052 -1.6706
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001270998254.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:01:47
Heat of formation + Delta-G solvation = 48.185913 kcal
Electronic energy + Delta-G solvation = -29368.601808 eV
Core-core repulsion = 25432.363418 eV
Total energy + Delta-G solvation = -3936.238390 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-43.23486 -40.94847 -39.76503 -36.92462 -36.55945 -34.80571 -33.62163 -33.07140
-32.43396 -31.75670 -28.26517 -28.05089 -27.38390 -26.90913 -24.57787 -23.75583
-23.55905 -22.65173 -22.41262 -21.21133 -19.71233 -19.00058 -18.63981 -17.38447
-17.22640 -17.11608 -17.02850 -16.39879 -15.98810 -15.74221 -15.67842 -15.38705
-15.31786 -15.12775 -14.97458 -14.44778 -14.19062 -14.12296 -13.92087 -13.64577
-13.39752 -13.19456 -13.17173 -12.96483 -12.86260 -12.57059 -12.50603 -12.38725
-12.22650 -12.07110 -11.94735 -11.75398 -11.63507 -11.46358 -11.37059 -11.27879
-11.10586 -11.07372 -10.62452 -10.41562 -9.99625 -8.87078 -8.13418 -5.43797
0.16180 0.61714 1.12534 1.30054 1.41680 1.50653 2.17327 2.25119
2.43483 3.08297 3.19983 3.33284 3.37056 3.79758 3.82571 3.82870
3.89405 3.94952 3.97300 4.16270 4.22878 4.29594 4.38175 4.42799
4.45987 4.53347 4.67230 4.68048 4.71389 4.77297 4.81406 4.86559
4.92621 5.01604 5.06487 5.11221 5.12655 5.16873 5.17503 5.31628
5.32432 5.34886 5.40639 5.46258 5.51277 5.68848 5.90298 6.16117
6.40725 6.89591 6.95437 7.12363 7.66440 8.06784 9.06676
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.015059 B = 0.002612 C = 0.002334
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1858.850126 B =10716.262727 C =11993.556418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.136 4.136
3 C 0.111 3.889
4 N -0.349 5.349
5 C 0.113 3.887
6 C -0.129 4.129
7 C 0.605 3.395
8 O -0.566 6.566
9 N -0.709 5.709
10 C 0.141 3.859
11 C -0.081 4.081
12 C -0.126 4.126
13 C -0.092 4.092
14 C -0.129 4.129
15 C 0.116 3.884
16 N -0.613 5.613
17 C -0.238 4.238
18 H 0.050 0.950
19 C -0.038 4.038
20 N -0.959 5.959
21 Si 0.947 3.053
22 H -0.274 1.274
23 H -0.315 1.315
24 H -0.264 1.264
25 C 0.157 3.843
26 N -0.233 5.233
27 N -0.092 5.092
28 H 0.067 0.933
29 H 0.075 0.925
30 H 0.060 0.940
31 H 0.062 0.938
32 H 0.059 0.941
33 H 0.114 0.886
34 H 0.144 0.856
35 H 0.242 0.758
36 H 0.409 0.591
37 H 0.071 0.929
38 H 0.082 0.918
39 H 0.040 0.960
40 H 0.047 0.953
41 H 0.067 0.933
42 H 0.068 0.932
43 H 0.087 0.913
44 H 0.060 0.940
45 H 0.082 0.918
46 H 0.046 0.954
47 H 0.030 0.970
48 H 0.260 0.740
49 H 0.047 0.953
50 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.045 14.149 -10.349 28.954
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.175 4.175
3 C -0.007 4.007
4 N -0.133 5.133
5 C -0.046 4.046
6 C -0.269 4.269
7 C 0.390 3.610
8 O -0.445 6.445
9 N -0.359 5.359
10 C 0.018 3.982
11 C -0.083 4.083
12 C -0.184 4.184
13 C -0.130 4.130
14 C -0.168 4.168
15 C -0.008 4.008
16 N -0.337 5.337
17 C -0.368 4.368
18 H 0.068 0.932
19 C -0.232 4.232
20 N -0.605 5.605
21 Si 0.777 3.223
22 H -0.201 1.201
23 H -0.245 1.245
24 H -0.188 1.188
25 C 0.032 3.968
26 N -0.106 5.106
27 N -0.072 5.072
28 H 0.086 0.914
29 H 0.094 0.906
30 H 0.079 0.921
31 H 0.081 0.919
32 H 0.078 0.922
33 H 0.132 0.868
34 H 0.162 0.838
35 H 0.258 0.742
36 H 0.245 0.755
37 H 0.089 0.911
38 H 0.101 0.899
39 H 0.059 0.941
40 H 0.066 0.934
41 H 0.086 0.914
42 H 0.087 0.913
43 H 0.105 0.895
44 H 0.078 0.922
45 H 0.100 0.900
46 H 0.064 0.936
47 H 0.048 0.952
48 H 0.069 0.931
49 H 0.066 0.934
50 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges -23.022 13.651 -9.697 28.467
hybrid contribution 0.797 -0.797 -0.349 1.180
sum -22.225 12.855 -10.046 27.570
Atomic orbital electron populations
1.21675 0.92125 1.03030 1.03407 1.21791 0.98318 0.94563 1.02816
1.22660 0.69894 1.00369 1.07809 1.50915 1.10165 1.33373 1.18870
1.23902 0.88884 0.95782 0.95989 1.21588 0.95500 1.09817 1.00011
1.16870 0.82153 0.79219 0.82708 1.90760 1.87135 1.40081 1.26539
1.45971 1.05333 1.52957 1.31673 1.21418 0.81555 0.99625 0.95622
1.21162 0.94832 0.95935 0.96322 1.21709 1.01255 1.00365 0.95045
1.21381 0.91942 1.01261 0.98398 1.21965 0.98871 0.94879 1.01113
1.21437 0.88011 0.95219 0.96171 1.44374 1.01437 1.50715 1.37180
1.18823 1.05220 1.11190 1.01530 0.93181 1.25879 1.00598 0.98239
0.98492 1.69972 1.32450 1.35423 1.22687 0.85906 0.79342 0.75456
0.81626 1.20093 1.24458 1.18841 1.21075 0.87622 0.92313 0.95771
1.74692 1.13917 1.10823 1.11145 1.81931 0.93469 1.18599 1.13203
0.91389 0.90648 0.92083 0.91910 0.92250 0.86828 0.83786 0.74152
0.75483 0.91094 0.89945 0.94092 0.93369 0.91416 0.91297 0.89467
0.92178 0.89995 0.93617 0.95211 0.93144 0.93397 0.95430
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.62 9.91 71.98 0.71 0.09 16
2 C -0.14 -1.19 6.14 30.60 0.19 -1.00 16
3 C 0.11 0.73 6.54 86.38 0.56 1.30 16
4 N -0.35 -5.75 3.69 -347.10 -1.28 -7.03 16
5 C 0.11 1.91 11.27 83.85 0.95 2.85 16
6 C -0.13 -3.30 6.99 40.82 0.29 -3.02 16
7 C 0.61 17.08 7.82 86.69 0.68 17.76 16
8 O -0.57 -17.36 16.86 -4.00 -0.07 -17.43 16
9 N -0.71 -20.03 4.99 -466.29 -2.33 -22.36 16
10 C 0.14 3.70 4.57 86.38 0.39 4.10 16
11 C -0.08 -2.40 0.53 -52.10 -0.03 -2.42 16
12 C -0.13 -3.96 7.81 71.98 0.56 -3.39 16
13 C -0.09 -2.44 4.71 30.62 0.14 -2.30 16
14 C -0.13 -4.13 5.74 30.67 0.18 -3.95 16
15 C 0.12 4.87 4.20 86.36 0.36 5.23 16
16 N -0.61 -28.65 2.21 -699.11 -1.54 -30.19 16
17 C -0.24 -13.63 10.04 84.03 0.84 -12.78 16
18 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16
19 C -0.04 -2.25 5.23 84.86 0.44 -1.81 16
20 N -0.96 -61.50 13.97 21.65 0.30 -61.20 16
21 Si 0.95 47.72 24.35 68.60 1.67 49.39 16
22 H -0.27 -12.99 6.62 99.48 0.66 -12.33 16
23 H -0.32 -16.27 7.11 99.48 0.71 -15.56 16
24 H -0.26 -12.78 6.64 99.48 0.66 -12.12 16
25 C 0.16 6.06 4.93 86.36 0.43 6.49 16
26 N -0.23 -6.92 12.04 -49.99 -0.60 -7.52 16
27 N -0.09 -2.40 13.65 37.02 0.51 -1.90 16
28 H 0.07 0.21 8.14 -2.38 -0.02 0.20 16
29 H 0.07 0.11 8.14 -2.38 -0.02 0.09 16
30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16
31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16
33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16
34 H 0.14 -0.13 8.08 -2.39 -0.02 -0.14 16
35 H 0.24 1.98 8.06 -2.91 -0.02 1.96 16
36 H 0.41 12.39 5.91 -92.70 -0.55 11.84 16
37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16
38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16
39 H 0.04 1.32 6.87 -2.38 -0.02 1.30 16
40 H 0.05 1.81 5.97 -2.39 -0.01 1.79 16
41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16
43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16
44 H 0.06 2.04 6.34 -2.39 -0.02 2.03 16
45 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16
46 H 0.05 2.14 4.49 -2.39 -0.01 2.13 16
47 H 0.03 1.22 7.08 -2.39 -0.02 1.20 16
48 H 0.26 15.88 8.31 -92.71 -0.77 15.10 16
49 H 0.05 1.95 6.83 -2.39 -0.02 1.93 16
50 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16
Total: -1.00 -77.73 390.39 3.65 -74.07
By element:
Atomic # 1 Polarization: 16.72 SS G_CDS: 0.30 Total: 17.02 kcal
Atomic # 6 Polarization: 0.44 SS G_CDS: 6.70 Total: 7.14 kcal
Atomic # 7 Polarization: -125.25 SS G_CDS: -4.95 Total: -130.20 kcal
Atomic # 8 Polarization: -17.36 SS G_CDS: -0.07 Total: -17.43 kcal
Atomic # 14 Polarization: 47.72 SS G_CDS: 1.67 Total: 49.39 kcal
Total: -77.73 3.65 -74.07 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001270998254.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.259 kcal
(2) G-P(sol) polarization free energy of solvation -77.728 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.531 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.073 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.186 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds