Wall clock time and date at job start Tue Mar 31 2020 19:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 N 1.46498 * 109.47038 * 179.97438 * 3 2 1 5 5 C 1.34811 * 126.59418 * 124.95399 * 4 3 2 6 6 C 1.36597 * 106.84152 * 180.02562 * 5 4 3 7 7 C 1.47526 * 125.77077 * 180.26333 * 6 5 4 8 8 O 1.21592 * 119.99877 * 359.71087 * 7 6 5 9 9 N 1.34775 * 119.99805 * 179.71218 * 7 6 5 10 10 C 1.46506 * 119.99780 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46667 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.49902 * 60.00272 * 11 10 9 13 13 C 1.53046 * 109.49278 * 180.02562 * 11 10 9 14 14 C 1.53044 * 109.53540 * 181.28642 * 13 11 10 15 15 C 1.53192 * 109.33822 * 298.68167 * 14 13 11 16 16 N 1.46925 * 108.77460 * 54.62244 * 15 14 13 17 17 C 1.36936 * 120.62878 * 126.41532 * 16 15 14 18 18 H 1.08003 * 120.00086 * 331.81759 * 17 16 15 19 19 C 1.38813 * 120.00078 * 151.82531 * 17 16 15 20 20 N 1.31620 * 120.00016 * 343.06402 * 19 17 16 21 21 Si 1.86801 * 119.99989 * 163.06726 * 19 17 16 22 22 H 1.48494 * 109.47134 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47045 * 119.99796 * 21 19 17 24 24 H 1.48500 * 109.46895 * 239.99548 * 21 19 17 25 25 C 1.46922 * 118.73943 * 306.38878 * 16 15 14 26 26 N 1.34395 * 108.45730 * 359.97438 * 6 5 4 27 27 N 1.28766 * 109.52686 * 0.02562 * 26 6 5 28 28 H 1.09003 * 109.46973 * 299.99724 * 1 2 3 29 29 H 1.09001 * 109.46984 * 59.99630 * 1 2 3 30 30 H 1.08997 * 109.47258 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46903 * 239.99736 * 2 1 3 32 32 H 1.09004 * 109.46929 * 119.99851 * 2 1 3 33 33 H 1.09003 * 109.46949 * 60.00262 * 3 2 1 34 34 H 1.08993 * 109.47181 * 300.00208 * 3 2 1 35 35 H 1.07997 * 126.57908 * 0.02562 * 5 4 3 36 36 H 0.97003 * 120.00129 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.47074 * 300.00325 * 10 9 7 38 38 H 1.09001 * 109.46848 * 60.00612 * 10 9 7 39 39 H 1.09004 * 109.46694 * 60.00079 * 12 11 10 40 40 H 1.08997 * 109.47223 * 179.97438 * 12 11 10 41 41 H 1.08990 * 109.47444 * 299.99857 * 12 11 10 42 42 H 1.08995 * 109.45885 * 301.33581 * 13 11 10 43 43 H 1.08993 * 109.46098 * 61.30141 * 13 11 10 44 44 H 1.08998 * 109.49357 * 178.71826 * 14 13 11 45 45 H 1.08997 * 109.47535 * 58.63578 * 14 13 11 46 46 H 1.09004 * 109.58697 * 294.83074 * 15 14 13 47 47 H 1.08998 * 109.70153 * 174.47843 * 15 14 13 48 48 H 0.96995 * 120.00173 * 180.02562 * 20 19 17 49 49 H 1.09003 * 109.58823 * 293.82493 * 25 16 15 50 50 H 1.09002 * 109.70219 * 173.46853 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3091 2.0624 -0.8863 6 6 5.5945 1.7975 -0.5076 7 6 6.8110 2.2801 -1.1886 8 8 6.7165 2.9746 -2.1822 9 7 8.0270 1.9512 -0.7094 10 6 9.2350 2.4301 -1.3860 11 6 10.4715 1.9176 -0.6450 12 6 10.4644 0.3876 -0.6369 13 6 11.7339 2.4180 -1.3509 14 6 12.9714 1.8795 -0.6293 15 6 12.9844 2.3989 0.8119 16 7 11.7105 2.0459 1.4533 17 6 11.6927 1.3653 2.6414 18 1 12.5057 0.7013 2.8957 19 6 10.6297 1.5288 3.5190 20 7 9.8197 2.5577 3.3872 21 14 10.3490 0.2884 4.8873 22 1 11.3907 -0.7677 4.8194 23 1 10.4249 0.9755 6.2016 24 1 9.0078 -0.3289 4.7282 25 6 10.4563 2.4374 0.7960 26 7 5.5637 1.0280 0.5938 27 7 4.3405 0.7974 0.9236 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9968 2.6549 -1.7335 36 1 8.1023 1.3969 0.0831 37 1 9.2474 2.0611 -2.4116 38 1 9.2402 3.5201 -1.3918 39 1 10.4769 0.0188 -1.6625 40 1 11.3457 0.0230 -0.1093 41 1 9.5659 0.0311 -0.1335 42 1 11.7348 2.0694 -2.3836 43 1 11.7507 3.5077 -1.3356 44 1 13.8696 2.2176 -1.1459 45 1 12.9430 0.7899 -0.6230 46 1 13.1041 3.4824 0.8087 47 1 13.8084 1.9419 1.3598 48 1 9.0771 2.6721 4.0006 49 1 10.3697 3.5240 0.7915 50 1 9.6105 2.0057 1.3312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270998255.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:52 Heat of formation + Delta-G solvation = 66.561971 kcal Electronic energy + Delta-G solvation = -29810.143373 eV Core-core repulsion = 25874.701829 eV Total energy + Delta-G solvation = -3935.441545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.18844 -39.42080 -38.12154 -36.24544 -34.71072 -33.18053 -32.79624 -31.44060 -30.66988 -29.79009 -27.46053 -26.46320 -25.63880 -25.20078 -23.37311 -22.81983 -22.03584 -21.69384 -20.50233 -19.99199 -18.34579 -17.62688 -16.63925 -16.39133 -16.13933 -15.71770 -15.46442 -14.94785 -14.71979 -14.56082 -14.03713 -13.90178 -13.83002 -13.64368 -13.36685 -13.08538 -13.03645 -12.67401 -12.51708 -12.23276 -12.22029 -12.12780 -11.90351 -11.54915 -11.42773 -11.22507 -11.11864 -10.88776 -10.77751 -10.58655 -10.40789 -10.31606 -10.11205 -10.01939 -9.91537 -9.74385 -9.48285 -9.30415 -9.28415 -8.61494 -8.40236 -6.58869 -5.72191 -3.14760 1.11810 1.84175 1.93090 3.43511 3.46249 3.51825 3.53234 3.54148 4.01526 4.23156 4.30012 4.55709 4.57728 4.75370 4.77229 4.90096 5.00239 5.10764 5.20768 5.28567 5.37557 5.49094 5.51486 5.56515 5.59552 5.65766 5.71369 5.82304 5.83863 6.03489 6.11435 6.16381 6.24120 6.27848 6.31971 6.48274 6.50046 6.60803 6.70213 6.81105 6.89995 6.95086 7.04156 7.11832 7.37343 7.67337 7.78798 7.86127 8.06643 8.47662 8.50987 9.27629 9.91077 10.48270 11.35595 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011793 B = 0.003304 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.785444 B = 8472.603821 C =10313.806761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.122 3.878 4 N -0.365 5.365 5 C 0.088 3.912 6 C -0.096 4.096 7 C 0.601 3.399 8 O -0.553 6.553 9 N -0.699 5.699 10 C 0.136 3.864 11 C -0.103 4.103 12 C -0.127 4.127 13 C -0.094 4.094 14 C -0.135 4.135 15 C 0.144 3.856 16 N -0.588 5.588 17 C -0.252 4.252 18 H 0.064 0.936 19 C 0.005 3.995 20 N -0.898 5.898 21 Si 0.896 3.104 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.287 1.287 25 C 0.184 3.816 26 N -0.195 5.195 27 N -0.064 5.064 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.203 0.797 36 H 0.415 0.585 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.015 0.985 47 H 0.051 0.949 48 H 0.253 0.747 49 H 0.017 0.983 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.904 -2.320 -11.241 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.001 3.999 4 N -0.150 5.150 5 C -0.069 4.069 6 C -0.236 4.236 7 C 0.385 3.615 8 O -0.431 6.431 9 N -0.350 5.350 10 C 0.012 3.988 11 C -0.105 4.105 12 C -0.184 4.184 13 C -0.133 4.133 14 C -0.174 4.174 15 C 0.017 3.983 16 N -0.310 5.310 17 C -0.381 4.381 18 H 0.082 0.918 19 C -0.193 4.193 20 N -0.543 5.543 21 Si 0.726 3.274 22 H -0.204 1.204 23 H -0.219 1.219 24 H -0.213 1.213 25 C 0.058 3.942 26 N -0.068 5.068 27 N -0.044 5.044 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.220 0.780 36 H 0.252 0.748 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.033 0.967 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.035 0.965 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.050 -2.662 -10.548 18.570 hybrid contribution -0.456 -0.111 0.288 0.551 sum -15.505 -2.772 -10.259 18.798 Atomic orbital electron populations 1.21703 0.93933 1.02813 1.02290 1.21837 0.96856 0.94687 1.04310 1.22116 0.72798 0.99978 1.05036 1.50584 1.08707 1.35553 1.20171 1.23324 0.90204 0.97322 0.96068 1.21566 0.94667 1.08251 0.99083 1.16734 0.81940 0.79759 0.83051 1.90761 1.86904 1.39373 1.26095 1.45906 1.04826 1.52549 1.31670 1.21441 0.82956 0.99055 0.95312 1.21543 0.92448 0.96576 0.99941 1.21732 1.02704 0.94475 0.99529 1.21341 0.94505 0.99944 0.97459 1.22048 0.96136 1.01008 0.98241 1.20919 0.89908 0.96331 0.91121 1.43969 0.99261 1.65754 1.22026 1.19167 1.06986 1.17876 0.94094 0.91787 1.25009 1.00052 0.96880 0.97398 1.70019 1.18522 1.27003 1.38713 0.86327 0.77983 0.81208 0.81911 1.20352 1.21887 1.21313 1.20807 0.90880 0.96093 0.86455 1.74754 1.12601 1.09808 1.09686 1.82020 0.93438 1.17318 1.11626 0.92077 0.92282 0.91682 0.91049 0.89933 0.88394 0.87829 0.78047 0.74756 0.92054 0.91602 0.94566 0.90947 0.93473 0.93396 0.92575 0.93273 0.91952 0.96672 0.92995 0.93690 0.96484 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.25 16 2 C -0.14 -0.85 6.14 -26.73 -0.16 -1.01 16 3 C 0.12 0.76 6.54 -4.04 -0.03 0.74 16 4 N -0.37 -4.06 3.69 -61.07 -0.23 -4.28 16 5 C 0.09 1.03 11.27 -16.84 -0.19 0.84 16 6 C -0.10 -1.53 6.99 -83.55 -0.58 -2.11 16 7 C 0.60 10.54 7.82 -12.47 -0.10 10.44 16 8 O -0.55 -10.38 16.86 5.28 0.09 -10.30 16 9 N -0.70 -12.52 4.99 -61.35 -0.31 -12.83 16 10 C 0.14 2.35 4.57 -4.04 -0.02 2.33 16 11 C -0.10 -1.88 0.53 -154.39 -0.08 -1.97 16 12 C -0.13 -2.28 7.81 37.16 0.29 -1.99 16 13 C -0.09 -1.57 4.71 -26.68 -0.13 -1.69 16 14 C -0.14 -2.31 5.74 -26.61 -0.15 -2.46 16 15 C 0.14 2.99 6.52 -3.71 -0.02 2.96 16 16 N -0.59 -14.36 2.43 -172.32 -0.42 -14.78 16 17 C -0.25 -6.79 9.58 -15.06 -0.14 -6.94 16 18 H 0.06 1.72 7.89 -52.48 -0.41 1.30 16 19 C 0.01 0.15 4.92 -17.43 -0.09 0.07 16 20 N -0.90 -25.96 11.19 55.49 0.62 -25.34 16 21 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 C 0.18 4.25 3.72 -3.71 -0.01 4.24 16 26 N -0.19 -3.40 12.04 32.85 0.40 -3.01 16 27 N -0.06 -0.98 13.65 60.35 0.82 -0.16 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.20 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.41 7.91 5.91 -40.82 -0.24 7.67 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 1.41 5.97 -51.93 -0.31 1.10 16 41 H 0.05 0.87 6.86 -51.93 -0.36 0.52 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.08 6.33 -51.93 -0.33 0.75 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.09 2.31 4.97 -51.93 -0.26 2.05 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -32.75 396.84 -7.34 -40.09 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -8.22 Total: 4.52 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.05 Total: 3.20 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.89 Total: -60.39 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.75 -7.34 -40.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270998255.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.649 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds