Wall clock time and date at job start Tue Mar 31 2020 19:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 N 1.46498 * 109.47038 * 179.97438 * 3 2 1 5 5 C 1.34811 * 126.59418 * 124.95399 * 4 3 2 6 6 C 1.36597 * 106.84152 * 180.02562 * 5 4 3 7 7 C 1.47526 * 125.77077 * 180.26333 * 6 5 4 8 8 O 1.21592 * 119.99877 * 359.71087 * 7 6 5 9 9 N 1.34775 * 119.99805 * 179.71218 * 7 6 5 10 10 C 1.46506 * 119.99780 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46667 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.49902 * 60.00272 * 11 10 9 13 13 C 1.53046 * 109.49278 * 180.02562 * 11 10 9 14 14 C 1.53044 * 109.53540 * 181.28642 * 13 11 10 15 15 C 1.53192 * 109.33822 * 298.68167 * 14 13 11 16 16 N 1.46925 * 108.77460 * 54.62244 * 15 14 13 17 17 C 1.36936 * 120.62878 * 126.41532 * 16 15 14 18 18 H 1.08003 * 120.00086 * 331.81759 * 17 16 15 19 19 C 1.38813 * 120.00078 * 151.82531 * 17 16 15 20 20 N 1.31620 * 120.00016 * 343.06402 * 19 17 16 21 21 Si 1.86801 * 119.99989 * 163.06726 * 19 17 16 22 22 H 1.48494 * 109.47134 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47045 * 119.99796 * 21 19 17 24 24 H 1.48500 * 109.46895 * 239.99548 * 21 19 17 25 25 C 1.46922 * 118.73943 * 306.38878 * 16 15 14 26 26 N 1.34395 * 108.45730 * 359.97438 * 6 5 4 27 27 N 1.28766 * 109.52686 * 0.02562 * 26 6 5 28 28 H 1.09003 * 109.46973 * 299.99724 * 1 2 3 29 29 H 1.09001 * 109.46984 * 59.99630 * 1 2 3 30 30 H 1.08997 * 109.47258 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46903 * 239.99736 * 2 1 3 32 32 H 1.09004 * 109.46929 * 119.99851 * 2 1 3 33 33 H 1.09003 * 109.46949 * 60.00262 * 3 2 1 34 34 H 1.08993 * 109.47181 * 300.00208 * 3 2 1 35 35 H 1.07997 * 126.57908 * 0.02562 * 5 4 3 36 36 H 0.97003 * 120.00129 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.47074 * 300.00325 * 10 9 7 38 38 H 1.09001 * 109.46848 * 60.00612 * 10 9 7 39 39 H 1.09004 * 109.46694 * 60.00079 * 12 11 10 40 40 H 1.08997 * 109.47223 * 179.97438 * 12 11 10 41 41 H 1.08990 * 109.47444 * 299.99857 * 12 11 10 42 42 H 1.08995 * 109.45885 * 301.33581 * 13 11 10 43 43 H 1.08993 * 109.46098 * 61.30141 * 13 11 10 44 44 H 1.08998 * 109.49357 * 178.71826 * 14 13 11 45 45 H 1.08997 * 109.47535 * 58.63578 * 14 13 11 46 46 H 1.09004 * 109.58697 * 294.83074 * 15 14 13 47 47 H 1.08998 * 109.70153 * 174.47843 * 15 14 13 48 48 H 0.96995 * 120.00173 * 180.02562 * 20 19 17 49 49 H 1.09003 * 109.58823 * 293.82493 * 25 16 15 50 50 H 1.09002 * 109.70219 * 173.46853 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3091 2.0624 -0.8863 6 6 5.5945 1.7975 -0.5076 7 6 6.8110 2.2801 -1.1886 8 8 6.7165 2.9746 -2.1822 9 7 8.0270 1.9512 -0.7094 10 6 9.2350 2.4301 -1.3860 11 6 10.4715 1.9176 -0.6450 12 6 10.4644 0.3876 -0.6369 13 6 11.7339 2.4180 -1.3509 14 6 12.9714 1.8795 -0.6293 15 6 12.9844 2.3989 0.8119 16 7 11.7105 2.0459 1.4533 17 6 11.6927 1.3653 2.6414 18 1 12.5057 0.7013 2.8957 19 6 10.6297 1.5288 3.5190 20 7 9.8197 2.5577 3.3872 21 14 10.3490 0.2884 4.8873 22 1 11.3907 -0.7677 4.8194 23 1 10.4249 0.9755 6.2016 24 1 9.0078 -0.3289 4.7282 25 6 10.4563 2.4374 0.7960 26 7 5.5637 1.0280 0.5938 27 7 4.3405 0.7974 0.9236 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9968 2.6549 -1.7335 36 1 8.1023 1.3969 0.0831 37 1 9.2474 2.0611 -2.4116 38 1 9.2402 3.5201 -1.3918 39 1 10.4769 0.0188 -1.6625 40 1 11.3457 0.0230 -0.1093 41 1 9.5659 0.0311 -0.1335 42 1 11.7348 2.0694 -2.3836 43 1 11.7507 3.5077 -1.3356 44 1 13.8696 2.2176 -1.1459 45 1 12.9430 0.7899 -0.6230 46 1 13.1041 3.4824 0.8087 47 1 13.8084 1.9419 1.3598 48 1 9.0771 2.6721 4.0006 49 1 10.3697 3.5240 0.7915 50 1 9.6105 2.0057 1.3312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270998255.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:51 Heat of formation + Delta-G solvation = 45.198350 kcal Electronic energy + Delta-G solvation = -29811.069769 eV Core-core repulsion = 25874.701829 eV Total energy + Delta-G solvation = -3936.367941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.24575 -40.85380 -39.63106 -36.93789 -36.30883 -34.88020 -33.64274 -32.98854 -31.90825 -31.50052 -28.25078 -27.89261 -27.29459 -26.86569 -24.54713 -23.86901 -23.54076 -22.51200 -22.02306 -21.21148 -19.73709 -18.96409 -18.47447 -17.34809 -17.20377 -17.09131 -16.74675 -16.25487 -15.84589 -15.77845 -15.68007 -15.34914 -15.06587 -15.02451 -14.71611 -14.44796 -14.31603 -13.79581 -13.74210 -13.60603 -13.22369 -13.08966 -12.99258 -12.97158 -12.73785 -12.57909 -12.49893 -12.27670 -12.21552 -12.10275 -11.83585 -11.76024 -11.70073 -11.37297 -11.36203 -11.28981 -11.02914 -10.94080 -10.49868 -10.42171 -9.97985 -8.59882 -7.82292 -5.26743 0.14692 0.60866 1.11928 1.44648 1.49014 1.56954 2.17707 2.26443 2.53115 3.19359 3.31538 3.35505 3.63664 3.79806 3.81468 3.94703 3.97656 4.07474 4.07843 4.14846 4.21810 4.40367 4.44437 4.50065 4.56229 4.57695 4.68897 4.76933 4.78110 4.82528 4.84567 5.03180 5.07506 5.09679 5.14079 5.16522 5.20524 5.31313 5.31707 5.34070 5.43717 5.50089 5.50806 5.53907 5.65447 5.75813 5.82217 6.41797 6.43412 6.88870 7.11881 7.20196 7.92532 8.43998 9.22215 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011793 B = 0.003304 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.785444 B = 8472.603821 C =10313.806761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.348 5.348 5 C 0.114 3.886 6 C -0.129 4.129 7 C 0.602 3.398 8 O -0.568 6.568 9 N -0.706 5.706 10 C 0.141 3.859 11 C -0.091 4.091 12 C -0.119 4.119 13 C -0.093 4.093 14 C -0.124 4.124 15 C 0.136 3.864 16 N -0.604 5.604 17 C -0.252 4.252 18 H 0.065 0.935 19 C -0.044 4.044 20 N -0.928 5.928 21 Si 0.953 3.047 22 H -0.265 1.265 23 H -0.295 1.295 24 H -0.295 1.295 25 C 0.195 3.805 26 N -0.234 5.234 27 N -0.093 5.093 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.146 0.854 35 H 0.244 0.756 36 H 0.407 0.593 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.031 0.969 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.008 0.992 47 H 0.051 0.949 48 H 0.245 0.755 49 H -0.017 1.017 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.812 -2.649 -13.650 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.133 5.133 5 C -0.045 4.045 6 C -0.269 4.269 7 C 0.387 3.613 8 O -0.448 6.448 9 N -0.355 5.355 10 C 0.017 3.983 11 C -0.093 4.093 12 C -0.176 4.176 13 C -0.131 4.131 14 C -0.163 4.163 15 C 0.011 3.989 16 N -0.327 5.327 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.240 4.240 20 N -0.574 5.574 21 Si 0.782 3.218 22 H -0.190 1.190 23 H -0.223 1.223 24 H -0.222 1.222 25 C 0.069 3.931 26 N -0.107 5.107 27 N -0.073 5.073 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.164 0.836 35 H 0.260 0.740 36 H 0.243 0.757 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.026 0.974 47 H 0.069 0.931 48 H 0.054 0.946 49 H 0.001 0.999 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.952 -3.012 -12.960 20.772 hybrid contribution -0.230 0.040 1.027 1.054 sum -16.182 -2.973 -11.933 20.324 Atomic orbital electron populations 1.21673 0.92021 1.03107 1.03373 1.21790 0.98360 0.94319 1.02873 1.22684 0.69812 1.00632 1.07741 1.50925 1.10172 1.33596 1.18563 1.23880 0.88693 0.95794 0.96090 1.21598 0.95588 1.09964 0.99774 1.16940 0.82241 0.79262 0.82832 1.90732 1.87194 1.40124 1.26736 1.45991 1.05448 1.52596 1.31498 1.21413 0.82328 0.98523 0.95991 1.21347 0.94289 0.96848 0.96852 1.21641 1.01199 0.93849 1.00943 1.21368 0.92882 0.99912 0.98909 1.21928 0.97867 1.00929 0.95536 1.21112 0.88199 0.96050 0.93535 1.44222 1.00926 1.65724 1.21818 1.19439 1.06592 1.17442 0.94796 0.91773 1.25639 1.00342 0.98371 0.99668 1.70175 1.18970 1.28688 1.39581 0.85421 0.77540 0.79523 0.79322 1.18956 1.22258 1.22160 1.20546 0.89532 0.93765 0.89231 1.74726 1.13922 1.11167 1.10931 1.81913 0.93443 1.18723 1.13220 0.91587 0.90565 0.91859 0.91607 0.92359 0.87161 0.83625 0.73955 0.75656 0.89946 0.92504 0.91526 0.92491 0.94964 0.89924 0.92743 0.89969 0.91832 0.97394 0.93060 0.94558 0.99941 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.91 71.98 0.71 -0.15 16 2 C -0.13 -1.46 6.14 30.60 0.19 -1.27 16 3 C 0.11 1.09 6.54 86.38 0.56 1.65 16 4 N -0.35 -7.24 3.69 -347.11 -1.28 -8.52 16 5 C 0.11 2.47 11.27 83.85 0.95 3.41 16 6 C -0.13 -4.10 6.99 40.82 0.29 -3.82 16 7 C 0.60 21.22 7.82 86.69 0.68 21.90 16 8 O -0.57 -20.87 16.86 -4.01 -0.07 -20.94 16 9 N -0.71 -25.87 4.99 -466.27 -2.33 -28.20 16 10 C 0.14 4.81 4.57 86.38 0.39 5.20 16 11 C -0.09 -3.30 0.53 -52.10 -0.03 -3.33 16 12 C -0.12 -4.16 7.81 71.98 0.56 -3.60 16 13 C -0.09 -2.86 4.71 30.62 0.14 -2.71 16 14 C -0.12 -3.93 5.74 30.67 0.18 -3.75 16 15 C 0.14 5.62 6.52 86.36 0.56 6.18 16 16 N -0.60 -30.08 2.43 -699.10 -1.70 -31.78 16 17 C -0.25 -13.90 9.58 84.03 0.81 -13.09 16 18 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16 19 C -0.04 -2.53 4.92 84.86 0.42 -2.11 16 20 N -0.93 -56.04 11.19 21.65 0.24 -55.80 16 21 Si 0.95 46.44 29.59 68.60 2.03 48.47 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 24 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 25 C 0.20 9.34 3.72 86.36 0.32 9.67 16 26 N -0.23 -8.50 12.04 -49.99 -0.60 -9.11 16 27 N -0.09 -2.91 13.65 37.02 0.51 -2.40 16 28 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.15 0.30 8.08 -2.39 -0.02 0.28 16 35 H 0.24 3.03 8.06 -2.91 -0.02 3.00 16 36 H 0.41 16.37 5.91 -92.71 -0.55 15.83 16 37 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.06 2.17 5.97 -2.39 -0.01 2.15 16 41 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 42 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.06 2.04 6.33 -2.39 -0.02 2.02 16 46 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 47 H 0.05 2.07 7.93 -2.39 -0.02 2.06 16 48 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 49 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 50 H 0.06 3.22 4.97 -2.39 -0.01 3.21 16 Total: -1.00 -75.10 396.84 3.92 -71.19 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.39 Total: 22.91 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 6.73 Total: 14.18 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -5.16 Total: -135.81 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.07 Total: -20.94 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -75.10 3.92 -71.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270998255.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.386 kcal (2) G-P(sol) polarization free energy of solvation -75.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds