Wall clock time and date at job start Tue Mar 31 2020 18:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47057 * 2 1 4 4 C 1.52995 * 109.46948 * 120.00374 * 2 1 3 5 5 C 1.53008 * 109.46968 * 175.00158 * 4 2 1 6 6 N 1.46499 * 109.47292 * 180.02562 * 5 4 2 7 7 C 1.34806 * 126.59580 * 124.99547 * 6 5 4 8 8 C 1.36596 * 106.83749 * 179.75462 * 7 6 5 9 9 C 1.47527 * 125.76990 * 180.26004 * 8 7 6 10 10 O 1.21592 * 120.00232 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00039 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00144 * 180.02562 * 11 9 8 13 13 H 1.09000 * 112.84584 * 23.80961 * 12 11 9 14 14 C 1.53780 * 113.61387 * 155.00364 * 12 11 9 15 15 C 1.53774 * 87.08072 * 89.11884 * 14 12 11 16 16 H 1.09005 * 113.61466 * 270.88224 * 15 14 12 17 17 C 1.53005 * 113.61449 * 140.06766 * 15 14 12 18 18 N 1.46500 * 109.47120 * 174.99942 * 17 15 14 19 19 C 1.36935 * 120.00127 * 179.97438 * 18 17 15 20 20 H 1.08008 * 119.99788 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00402 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00188 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47047 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46915 * 120.00140 * 23 21 19 26 26 H 1.48494 * 109.47291 * 240.00362 * 23 21 19 27 27 C 1.53774 * 113.61436 * 252.50055 * 12 11 9 28 28 N 1.34399 * 108.45911 * 0.24576 * 8 7 6 29 29 N 1.28753 * 109.52471 * 359.97438 * 28 8 7 30 30 H 1.08999 * 109.47410 * 299.99839 * 1 2 3 31 31 H 1.08997 * 109.47198 * 60.00206 * 1 2 3 32 32 H 1.09004 * 109.47205 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46693 * 240.00368 * 2 1 3 34 34 H 1.09003 * 109.47139 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47283 * 300.00550 * 3 2 1 36 36 H 1.08999 * 109.47333 * 60.00117 * 3 2 1 37 37 H 1.08999 * 109.47605 * 55.00283 * 4 2 1 38 38 H 1.08997 * 109.47399 * 294.99463 * 4 2 1 39 39 H 1.08996 * 109.47137 * 59.99222 * 5 4 2 40 40 H 1.09007 * 109.46537 * 299.99866 * 5 4 2 41 41 H 1.08002 * 126.58390 * 0.02761 * 7 6 5 42 42 H 0.96998 * 119.99928 * 0.02562 * 11 9 8 43 43 H 1.09004 * 113.61421 * 203.66862 * 14 12 11 44 44 H 1.09003 * 113.61158 * 334.48428 * 14 12 11 45 45 H 1.08997 * 109.46622 * 294.99854 * 17 15 14 46 46 H 1.08998 * 109.47364 * 54.99792 * 17 15 14 47 47 H 0.96998 * 119.99757 * 359.97438 * 18 17 15 48 48 H 0.96999 * 119.99846 * 180.02562 * 22 21 19 49 49 H 1.08998 * 113.61733 * 25.43703 * 27 12 11 50 50 H 1.09008 * 113.61479 * 156.33449 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 7 4.0532 -1.5223 2.3837 7 6 4.8312 -2.6227 2.4145 8 6 5.0466 -2.9183 3.7306 9 6 5.8517 -4.0443 4.2409 10 8 6.3932 -4.8062 3.4633 11 7 5.9870 -4.2285 5.5692 12 6 6.7870 -5.3463 6.0760 13 1 7.5312 -5.6933 5.3592 14 6 7.3533 -5.1091 7.4859 15 6 6.0523 -5.7254 8.0267 16 1 5.2562 -4.9974 8.1829 17 6 6.2638 -6.6426 9.2330 18 7 4.9639 -7.0826 9.7457 19 6 4.9022 -7.9167 10.8299 20 1 5.8119 -8.2499 11.3073 21 6 3.6705 -8.3332 11.3161 22 7 2.5619 -7.9268 10.7346 23 14 3.5865 -9.4717 12.7947 24 1 4.9623 -9.7804 13.2605 25 1 2.8314 -8.8082 13.8879 26 1 2.8990 -10.7308 12.4115 27 6 5.9455 -6.4776 6.6897 28 7 4.4014 -2.0098 4.4819 29 7 3.7990 -1.1679 3.7163 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -1.7199 1.2951 38 1 1.7517 -0.1584 2.1369 39 1 3.9995 0.1674 1.1419 40 1 3.8532 -1.3940 0.3001 41 1 5.2147 -3.1640 1.5621 42 1 5.5548 -3.6209 6.1895 43 1 8.2414 -5.7018 7.7052 44 1 7.4755 -4.0551 7.7357 45 1 6.8481 -7.5116 8.9305 46 1 6.7972 -6.0996 10.0132 47 1 4.1469 -6.7830 9.3171 48 1 1.7012 -8.2175 11.0745 49 1 4.9299 -6.5285 6.2972 50 1 6.4487 -7.4446 6.6913 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277046666.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:03 Heat of formation + Delta-G solvation = 73.281354 kcal Electronic energy + Delta-G solvation = -27641.107725 eV Core-core repulsion = 23705.957554 eV Total energy + Delta-G solvation = -3935.150170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.47739 -39.99323 -38.19544 -37.74272 -34.72840 -34.43456 -33.04030 -31.33895 -30.77001 -29.78609 -27.77100 -26.82385 -25.42388 -25.11416 -24.24218 -23.02076 -22.17942 -21.36619 -20.92654 -20.40549 -18.97955 -18.32967 -16.99401 -16.72006 -16.50614 -16.01990 -15.70572 -15.14281 -14.90567 -14.77062 -14.64982 -14.49223 -14.32640 -13.92134 -13.70969 -13.55921 -13.25224 -12.91397 -12.71583 -12.67429 -12.41466 -12.29153 -12.11804 -12.06761 -11.71556 -11.58501 -11.49653 -11.39507 -11.23730 -10.98202 -10.80116 -10.59061 -10.43672 -10.27250 -10.14902 -10.01323 -9.75826 -9.56762 -9.54013 -8.93604 -8.78436 -6.83270 -5.69780 -2.97704 0.85744 1.51961 1.67445 3.05535 3.18642 3.47662 3.52950 3.55454 3.78042 3.95565 4.06455 4.24622 4.31077 4.47658 4.54372 4.63748 4.67005 4.69768 4.76852 4.90075 4.92893 5.00243 5.07736 5.19574 5.20088 5.22421 5.27593 5.34892 5.35573 5.49826 5.60753 5.64468 5.68730 5.75947 5.80913 5.95373 6.01310 6.02844 6.09284 6.19651 6.32197 6.38482 6.50302 6.68988 6.86736 7.01947 7.41729 7.73821 7.76567 8.13036 8.49466 9.60349 10.20500 10.54881 11.53291 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.001798 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.441230 B =15566.414274 C =16969.015271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.154 4.154 4 C -0.131 4.131 5 C 0.119 3.881 6 N -0.361 5.361 7 C 0.092 3.908 8 C -0.101 4.101 9 C 0.607 3.393 10 O -0.542 6.542 11 N -0.692 5.692 12 C 0.116 3.884 13 H 0.101 0.899 14 C -0.138 4.138 15 C -0.114 4.114 16 H 0.089 0.911 17 C 0.163 3.837 18 N -0.732 5.732 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.138 4.138 28 N -0.202 5.202 29 N -0.061 5.061 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.204 0.796 42 H 0.410 0.590 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.018 0.982 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.069 0.931 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.812 19.240 -26.811 33.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.211 4.211 4 C -0.169 4.169 5 C -0.001 4.001 6 N -0.146 5.146 7 C -0.065 4.065 8 C -0.240 4.240 9 C 0.392 3.608 10 O -0.419 6.419 11 N -0.342 5.342 12 C 0.011 3.989 13 H 0.119 0.881 14 C -0.176 4.176 15 C -0.133 4.133 16 H 0.107 0.893 17 C 0.035 3.965 18 N -0.376 5.376 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.177 4.177 28 N -0.076 5.076 29 N -0.041 5.041 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.221 0.779 42 H 0.246 0.754 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.063 0.937 49 H 0.087 0.913 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.555 19.598 -26.322 32.916 hybrid contribution -0.283 -0.884 0.234 0.958 sum 2.272 18.713 -26.088 32.186 Atomic orbital electron populations 1.21830 0.94384 1.02158 1.02227 1.21058 0.96580 0.96365 0.97146 1.21958 1.00950 0.95784 1.02452 1.21996 0.92295 1.02505 1.00099 1.22216 0.96667 0.98552 0.82714 1.50581 1.34747 1.20204 1.09035 1.23378 0.93775 0.89257 1.00053 1.21481 1.09755 1.02168 0.90590 1.16717 0.79264 0.82189 0.82669 1.90799 1.48606 1.45881 1.56577 1.45472 1.51693 1.30684 1.06317 1.21989 0.94080 0.87298 0.95567 0.88074 1.23314 0.98729 1.01530 0.94070 1.22769 0.96944 0.98319 0.95240 0.89300 1.20637 0.89653 0.94088 0.92120 1.42364 1.02228 1.57552 1.35443 1.19302 0.92409 1.20217 1.04891 0.91185 1.24743 0.95402 1.01260 0.99811 1.69679 0.96708 1.49173 1.42709 0.86121 0.77269 0.80349 0.82504 1.20580 1.21944 1.21944 1.23414 1.00744 0.97575 0.95945 1.74671 1.05205 1.01063 1.26683 1.81997 1.20484 1.19050 0.82614 0.92314 0.92311 0.92451 0.90773 0.92557 0.92305 0.92160 0.90793 0.89767 0.88119 0.87730 0.77905 0.75424 0.88626 0.91132 0.96214 0.96399 0.78306 0.93655 0.91258 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.19 37.16 0.34 -0.24 16 2 C -0.09 -0.30 2.92 -90.62 -0.26 -0.56 16 3 C -0.15 -0.47 8.95 37.15 0.33 -0.14 16 4 C -0.13 -0.60 4.88 -26.73 -0.13 -0.73 16 5 C 0.12 0.49 6.30 -4.04 -0.03 0.46 16 6 N -0.36 -2.96 3.69 -61.06 -0.23 -3.19 16 7 C 0.09 0.82 11.27 -16.84 -0.19 0.63 16 8 C -0.10 -1.22 6.99 -83.55 -0.58 -1.80 16 9 C 0.61 8.35 7.82 -12.47 -0.10 8.26 16 10 O -0.54 -8.57 16.46 5.28 0.09 -8.48 16 11 N -0.69 -9.10 5.26 -54.06 -0.28 -9.38 16 12 C 0.12 1.54 4.32 -67.12 -0.29 1.25 16 13 H 0.10 1.36 7.46 -51.93 -0.39 0.97 16 14 C -0.14 -1.76 7.39 -25.92 -0.19 -1.95 16 15 C -0.11 -1.86 3.63 -89.81 -0.33 -2.18 16 16 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 17 C 0.16 3.33 6.10 -4.04 -0.02 3.30 16 18 N -0.73 -19.11 5.60 -59.91 -0.34 -19.45 16 19 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 20 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 21 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 22 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 23 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 C -0.14 -2.14 7.43 -25.93 -0.19 -2.33 16 28 N -0.20 -2.65 12.04 32.85 0.40 -2.25 16 29 N -0.06 -0.71 13.64 60.35 0.82 0.11 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.06 0.13 6.57 -51.93 -0.34 -0.21 16 35 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.32 6.56 -51.93 -0.34 -0.02 16 40 H 0.10 0.16 8.08 -51.93 -0.42 -0.26 16 41 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.41 5.13 8.39 -40.82 -0.34 4.79 16 43 H 0.10 1.13 8.10 -51.93 -0.42 0.70 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 48 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.09 1.41 7.90 -51.92 -0.41 1.00 16 LS Contribution 413.80 15.07 6.24 6.24 Total: -1.00 -35.21 413.80 -7.92 -43.13 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.42 Total: 7.24 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.89 Total: -3.59 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 1.10 Total: -62.45 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.21 -7.92 -43.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277046666.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.408 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds