Wall clock time and date at job start Tue Mar 31 2020 18:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47057 * 2 1 4 4 C 1.52995 * 109.46948 * 120.00374 * 2 1 3 5 5 C 1.53008 * 109.46968 * 175.00158 * 4 2 1 6 6 N 1.46499 * 109.47292 * 180.02562 * 5 4 2 7 7 C 1.34806 * 126.59580 * 124.99547 * 6 5 4 8 8 C 1.36596 * 106.83749 * 179.75462 * 7 6 5 9 9 C 1.47527 * 125.76990 * 180.26004 * 8 7 6 10 10 O 1.21592 * 120.00232 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00039 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00144 * 180.02562 * 11 9 8 13 13 H 1.09000 * 112.84584 * 23.80961 * 12 11 9 14 14 C 1.53780 * 113.61387 * 155.00364 * 12 11 9 15 15 C 1.53774 * 87.08072 * 89.11884 * 14 12 11 16 16 H 1.09005 * 113.61466 * 270.88224 * 15 14 12 17 17 C 1.53005 * 113.61449 * 140.06766 * 15 14 12 18 18 N 1.46500 * 109.47120 * 174.99942 * 17 15 14 19 19 C 1.36935 * 120.00127 * 179.97438 * 18 17 15 20 20 H 1.08008 * 119.99788 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00402 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00188 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47047 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46915 * 120.00140 * 23 21 19 26 26 H 1.48494 * 109.47291 * 240.00362 * 23 21 19 27 27 C 1.53774 * 113.61436 * 252.50055 * 12 11 9 28 28 N 1.34399 * 108.45911 * 0.24576 * 8 7 6 29 29 N 1.28753 * 109.52471 * 359.97438 * 28 8 7 30 30 H 1.08999 * 109.47410 * 299.99839 * 1 2 3 31 31 H 1.08997 * 109.47198 * 60.00206 * 1 2 3 32 32 H 1.09004 * 109.47205 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46693 * 240.00368 * 2 1 3 34 34 H 1.09003 * 109.47139 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47283 * 300.00550 * 3 2 1 36 36 H 1.08999 * 109.47333 * 60.00117 * 3 2 1 37 37 H 1.08999 * 109.47605 * 55.00283 * 4 2 1 38 38 H 1.08997 * 109.47399 * 294.99463 * 4 2 1 39 39 H 1.08996 * 109.47137 * 59.99222 * 5 4 2 40 40 H 1.09007 * 109.46537 * 299.99866 * 5 4 2 41 41 H 1.08002 * 126.58390 * 0.02761 * 7 6 5 42 42 H 0.96998 * 119.99928 * 0.02562 * 11 9 8 43 43 H 1.09004 * 113.61421 * 203.66862 * 14 12 11 44 44 H 1.09003 * 113.61158 * 334.48428 * 14 12 11 45 45 H 1.08997 * 109.46622 * 294.99854 * 17 15 14 46 46 H 1.08998 * 109.47364 * 54.99792 * 17 15 14 47 47 H 0.96998 * 119.99757 * 359.97438 * 18 17 15 48 48 H 0.96999 * 119.99846 * 180.02562 * 22 21 19 49 49 H 1.08998 * 113.61733 * 25.43703 * 27 12 11 50 50 H 1.09008 * 113.61479 * 156.33449 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 7 4.0532 -1.5223 2.3837 7 6 4.8312 -2.6227 2.4145 8 6 5.0466 -2.9183 3.7306 9 6 5.8517 -4.0443 4.2409 10 8 6.3932 -4.8062 3.4633 11 7 5.9870 -4.2285 5.5692 12 6 6.7870 -5.3463 6.0760 13 1 7.5312 -5.6933 5.3592 14 6 7.3533 -5.1091 7.4859 15 6 6.0523 -5.7254 8.0267 16 1 5.2562 -4.9974 8.1829 17 6 6.2638 -6.6426 9.2330 18 7 4.9639 -7.0826 9.7457 19 6 4.9022 -7.9167 10.8299 20 1 5.8119 -8.2499 11.3073 21 6 3.6705 -8.3332 11.3161 22 7 2.5619 -7.9268 10.7346 23 14 3.5865 -9.4717 12.7947 24 1 4.9623 -9.7804 13.2605 25 1 2.8314 -8.8082 13.8879 26 1 2.8990 -10.7308 12.4115 27 6 5.9455 -6.4776 6.6897 28 7 4.4014 -2.0098 4.4819 29 7 3.7990 -1.1679 3.7163 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -1.7199 1.2951 38 1 1.7517 -0.1584 2.1369 39 1 3.9995 0.1674 1.1419 40 1 3.8532 -1.3940 0.3001 41 1 5.2147 -3.1640 1.5621 42 1 5.5548 -3.6209 6.1895 43 1 8.2414 -5.7018 7.7052 44 1 7.4755 -4.0551 7.7357 45 1 6.8481 -7.5116 8.9305 46 1 6.7972 -6.0996 10.0132 47 1 4.1469 -6.7830 9.3171 48 1 1.7012 -8.2175 11.0745 49 1 4.9299 -6.5285 6.2972 50 1 6.4487 -7.4446 6.6913 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277046666.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:02 Heat of formation + Delta-G solvation = 49.168871 kcal Electronic energy + Delta-G solvation = -27642.153320 eV Core-core repulsion = 23705.957554 eV Total energy + Delta-G solvation = -3936.195766 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.26129 -41.11923 -39.34921 -38.14387 -36.33389 -35.31691 -34.34731 -32.81730 -32.01591 -30.38929 -28.49941 -28.03533 -26.60577 -25.75030 -25.49819 -24.55629 -22.89269 -22.81084 -21.73122 -20.84209 -20.26977 -19.14273 -19.03771 -17.33890 -17.30358 -17.07108 -16.69430 -16.32219 -15.95717 -15.85364 -15.67274 -15.48708 -15.15936 -15.04144 -14.84529 -14.72549 -14.39723 -14.00801 -13.69967 -13.41715 -13.34447 -13.16320 -13.11032 -12.91047 -12.82318 -12.70927 -12.65917 -12.16828 -12.11473 -12.05768 -11.91966 -11.74864 -11.70787 -11.54739 -11.35245 -11.24916 -11.17287 -11.12750 -10.85254 -10.41362 -10.00358 -8.96848 -7.94145 -5.22631 0.13910 0.58493 1.08634 1.47047 1.48345 1.58599 2.06975 2.20027 2.56813 3.15539 3.31218 3.38905 3.60140 3.62863 3.73535 3.77112 3.91032 3.95746 3.97167 3.98282 4.01006 4.25591 4.33823 4.34925 4.43796 4.54753 4.62331 4.73222 4.77684 4.81289 4.87792 4.88612 4.91660 4.95021 4.97262 5.00782 5.04053 5.06898 5.17869 5.29140 5.29266 5.37020 5.39891 5.45462 5.50060 5.50469 5.67114 6.28530 6.39545 6.88126 7.09951 7.34059 8.12615 8.34746 9.29861 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.001798 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.441230 B =15566.414274 C =16969.015271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 C -0.155 4.155 4 C -0.126 4.126 5 C 0.110 3.890 6 N -0.347 5.347 7 C 0.112 3.888 8 C -0.128 4.128 9 C 0.608 3.392 10 O -0.566 6.566 11 N -0.692 5.692 12 C 0.127 3.873 13 H 0.107 0.893 14 C -0.116 4.116 15 C -0.115 4.115 16 H 0.078 0.922 17 C 0.160 3.840 18 N -0.746 5.746 19 C -0.244 4.244 20 H 0.077 0.923 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.975 3.025 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.294 1.294 27 C -0.141 4.141 28 N -0.228 5.228 29 N -0.087 5.087 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.240 0.760 42 H 0.412 0.588 43 H 0.113 0.887 44 H 0.086 0.914 45 H 0.025 0.975 46 H 0.021 0.979 47 H 0.372 0.628 48 H 0.250 0.750 49 H 0.048 0.952 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 19.674 -28.395 34.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 C -0.212 4.212 4 C -0.164 4.164 5 C -0.008 4.008 6 N -0.131 5.131 7 C -0.046 4.046 8 C -0.268 4.268 9 C 0.394 3.606 10 O -0.444 6.444 11 N -0.341 5.341 12 C 0.022 3.978 13 H 0.125 0.875 14 C -0.155 4.155 15 C -0.134 4.134 16 H 0.096 0.904 17 C 0.034 3.966 18 N -0.388 5.388 19 C -0.376 4.376 20 H 0.095 0.905 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.804 3.196 24 H -0.188 1.188 25 H -0.221 1.221 26 H -0.221 1.221 27 C -0.179 4.179 28 N -0.102 5.102 29 N -0.068 5.068 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.160 0.840 41 H 0.256 0.744 42 H 0.248 0.752 43 H 0.132 0.868 44 H 0.105 0.895 45 H 0.043 0.957 46 H 0.039 0.961 47 H 0.203 0.797 48 H 0.059 0.941 49 H 0.067 0.933 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.202 20.074 -27.909 34.634 hybrid contribution -0.802 -0.968 0.625 1.404 sum 3.400 19.106 -27.284 33.481 Atomic orbital electron populations 1.21858 0.95144 1.01838 1.02057 1.21024 0.95904 0.96537 0.96986 1.21965 1.01660 0.95442 1.02111 1.21925 0.92808 1.01739 0.99976 1.22682 0.96127 0.99789 0.82236 1.50853 1.33587 1.19758 1.08929 1.23886 0.92273 0.88651 0.99831 1.21470 1.10981 1.02373 0.91965 1.16926 0.78927 0.82288 0.82489 1.90774 1.49765 1.46893 1.57011 1.45502 1.51622 1.30520 1.06487 1.21856 0.93465 0.86474 0.96038 0.87492 1.23241 0.97238 1.02525 0.92472 1.22686 0.99050 0.97850 0.93771 0.90416 1.20832 0.87241 0.94902 0.93589 1.42612 1.03818 1.57349 1.35055 1.19736 0.92669 1.19873 1.05301 0.90510 1.25612 0.95150 1.03420 1.03024 1.69844 0.97067 1.50894 1.44494 0.85038 0.77793 0.77917 0.78816 1.18845 1.22060 1.22088 1.23422 1.00131 0.98536 0.95841 1.74639 1.05950 1.01733 1.27831 1.81918 1.21149 1.19422 0.84263 0.93372 0.91626 0.92853 0.88995 0.91425 0.91847 0.93345 0.91777 0.91903 0.86637 0.83974 0.74429 0.75164 0.86843 0.89494 0.95718 0.96083 0.79689 0.94111 0.93288 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 71.98 0.66 -0.42 16 2 C -0.09 -0.41 2.92 -10.80 -0.03 -0.44 16 3 C -0.15 -0.68 8.95 71.98 0.64 -0.04 16 4 C -0.13 -1.01 4.88 30.60 0.15 -0.86 16 5 C 0.11 0.62 6.30 86.38 0.54 1.16 16 6 N -0.35 -5.10 3.69 -347.09 -1.28 -6.38 16 7 C 0.11 1.75 11.27 83.85 0.95 2.69 16 8 C -0.13 -3.01 6.99 40.82 0.29 -2.73 16 9 C 0.61 16.40 7.82 86.69 0.68 17.08 16 10 O -0.57 -17.36 16.46 -4.01 -0.07 -17.43 16 11 N -0.69 -17.93 5.26 -443.22 -2.33 -20.26 16 12 C 0.13 3.25 4.32 45.51 0.20 3.44 16 13 H 0.11 2.70 7.46 -2.39 -0.02 2.68 16 14 C -0.12 -2.74 7.39 31.12 0.23 -2.51 16 15 C -0.11 -3.70 3.63 -10.27 -0.04 -3.73 16 16 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 17 C 0.16 6.51 6.10 86.38 0.53 7.03 16 18 N -0.75 -39.44 5.60 -343.44 -1.92 -41.37 16 19 C -0.24 -14.09 9.99 84.03 0.84 -13.25 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 21 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 22 N -0.97 -61.59 13.06 21.65 0.28 -61.30 16 23 Si 0.98 47.42 29.55 68.60 2.03 49.45 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 27 C -0.14 -4.35 7.43 31.12 0.23 -4.12 16 28 N -0.23 -6.00 12.04 -49.99 -0.60 -6.60 16 29 N -0.09 -2.03 13.64 37.02 0.51 -1.52 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.07 0.15 6.57 -2.39 -0.02 0.13 16 35 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.12 0.39 6.56 -2.39 -0.02 0.37 16 40 H 0.14 -0.20 8.08 -2.38 -0.02 -0.22 16 41 H 0.24 1.83 8.06 -2.91 -0.02 1.81 16 42 H 0.41 10.34 8.39 -92.71 -0.78 9.57 16 43 H 0.11 2.33 8.10 -2.39 -0.02 2.31 16 44 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.02 0.99 7.85 -2.39 -0.02 0.97 16 46 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.37 21.08 7.67 -92.71 -0.71 20.37 16 48 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 49 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.09 2.83 7.90 -2.38 -0.02 2.81 16 Total: -1.00 -77.35 413.80 2.40 -74.95 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.54 Total: 31.46 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 6.33 Total: -0.99 kcal Atomic # 7 Polarization: -132.09 SS G_CDS: -5.35 Total: -137.44 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.07 Total: -17.43 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -77.35 2.40 -74.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277046666.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.117 kcal (2) G-P(sol) polarization free energy of solvation -77.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds