Wall clock time and date at job start Tue Mar 31 2020 19:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47241 * 2 1 4 4 N 1.46504 * 109.47244 * 120.00092 * 2 1 3 5 5 C 1.46506 * 119.99443 * 294.47734 * 4 2 1 6 6 C 1.52999 * 109.46855 * 265.96989 * 5 4 2 7 7 N 1.46497 * 109.47220 * 180.02562 * 6 5 4 8 8 C 1.46505 * 119.99941 * 90.00152 * 7 6 5 9 9 C 1.36936 * 120.00457 * 270.00064 * 7 6 5 10 10 H 1.08001 * 119.99345 * 19.85388 * 9 7 6 11 11 C 1.38810 * 120.00620 * 199.85217 * 9 7 6 12 12 N 1.31617 * 119.99747 * 12.74261 * 11 9 7 13 13 Si 1.86794 * 120.00069 * 192.74843 * 11 9 7 14 14 H 1.48496 * 109.47622 * 59.99908 * 13 11 9 15 15 H 1.48500 * 109.47004 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47038 * 299.99399 * 13 11 9 17 17 C 1.34770 * 120.00122 * 114.47169 * 4 2 1 18 18 O 1.21591 * 120.00164 * 354.97634 * 17 4 2 19 19 C 1.47522 * 119.99708 * 175.24864 * 17 4 2 20 20 C 1.36598 * 125.76865 * 175.69097 * 19 17 4 21 21 N 1.34815 * 106.84293 * 180.02562 * 20 19 17 22 22 C 1.46497 * 126.59925 * 179.97438 * 21 20 19 23 23 C 1.53780 * 113.61273 * 14.13358 * 22 21 20 24 24 C 1.53955 * 87.01997 * 220.04986 * 23 22 21 25 25 C 1.53781 * 113.61153 * 276.52899 * 22 21 20 26 26 N 1.40219 * 106.80736 * 359.97438 * 21 20 19 27 27 N 1.28761 * 108.36539 * 359.73118 * 26 21 20 28 28 H 1.08997 * 109.46805 * 300.00299 * 1 2 3 29 29 H 1.09002 * 109.46864 * 59.99883 * 1 2 3 30 30 H 1.08990 * 109.47106 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47306 * 239.99856 * 2 1 3 32 32 H 1.09003 * 109.47035 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47190 * 299.99893 * 3 2 1 34 34 H 1.08998 * 109.47088 * 59.99723 * 3 2 1 35 35 H 1.08999 * 109.47463 * 25.96918 * 5 4 2 36 36 H 1.09000 * 109.46759 * 145.97730 * 5 4 2 37 37 H 1.09005 * 109.47440 * 300.00316 * 6 5 4 38 38 H 1.09003 * 109.47106 * 60.00068 * 6 5 4 39 39 H 1.08997 * 109.47199 * 93.15016 * 8 7 6 40 40 H 1.08998 * 109.47167 * 213.15407 * 8 7 6 41 41 H 1.09005 * 109.46915 * 333.15367 * 8 7 6 42 42 H 0.96999 * 120.00461 * 180.02562 * 12 11 9 43 43 H 1.07998 * 126.58073 * 0.02562 * 20 19 17 44 44 H 1.08998 * 112.84887 * 145.33261 * 22 21 20 45 45 H 1.08996 * 113.61611 * 334.57061 * 23 22 21 46 46 H 1.09001 * 113.61609 * 105.47254 * 23 22 21 47 47 H 1.09002 * 113.53689 * 270.81324 * 24 23 22 48 48 H 1.08997 * 113.74109 * 139.94615 * 24 23 22 49 49 H 1.09001 * 113.61039 * 254.52701 * 25 22 21 50 50 H 1.08989 * 113.61872 * 25.43208 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7669 -0.1234 2.5234 6 6 2.9631 0.7307 2.9479 7 7 2.7119 1.2974 4.2753 8 6 3.1227 0.5634 5.4748 9 6 2.0933 2.5132 4.3949 10 1 1.5113 2.9059 3.5743 11 6 2.2141 3.2408 5.5709 12 7 3.1123 2.8958 6.4689 13 14 1.1017 4.7095 5.8789 14 1 -0.3156 4.2665 5.8752 15 1 1.4286 5.3102 7.1970 16 1 1.3076 5.7192 4.8096 17 6 2.6988 -1.8477 1.0757 18 8 2.8287 -2.3657 -0.0167 19 6 3.2809 -2.4888 2.2700 20 6 3.9180 -3.6968 2.2972 21 7 4.2937 -3.9116 3.5740 22 6 5.0105 -5.0810 4.0886 23 6 5.6342 -5.9549 2.9876 24 6 5.1890 -7.1744 3.8151 25 6 4.0938 -6.2733 4.4097 26 7 3.8664 -2.8004 4.3148 27 7 3.2795 -1.9804 3.5141 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9564 0.8899 35 1 0.8712 0.4968 2.4897 36 1 1.6233 -0.9303 3.2420 37 1 3.8588 0.1105 2.9816 38 1 3.1067 1.5376 2.2292 39 1 4.1174 0.8903 5.7780 40 1 2.4149 0.7586 6.2804 41 1 3.1415 -0.5048 5.2585 42 1 3.1966 3.4039 7.2908 43 1 4.0881 -4.3538 1.4571 44 1 5.7024 -4.8330 4.8935 45 1 5.1286 -5.8720 2.0255 46 1 6.7163 -5.8513 2.9084 47 1 5.9306 -7.4996 4.5447 48 1 4.7997 -7.9951 3.2126 49 1 3.9343 -6.4263 5.4770 50 1 3.1664 -6.2776 3.8372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278907242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:28 Heat of formation + Delta-G solvation = 107.999679 kcal Electronic energy + Delta-G solvation = -30561.952719 eV Core-core repulsion = 26628.308048 eV Total energy + Delta-G solvation = -3933.644671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.30179 -40.91372 -39.65818 -38.12461 -36.86228 -34.44778 -33.62081 -32.87183 -31.56797 -29.63317 -28.04868 -27.79414 -27.07458 -26.79243 -25.35109 -24.77109 -23.30368 -22.39330 -22.12956 -20.57046 -20.15193 -18.84975 -18.61657 -17.78482 -17.28697 -17.02927 -16.75289 -16.43313 -15.85329 -15.79720 -15.41872 -15.33094 -15.06016 -14.59595 -14.32804 -14.17723 -14.04702 -13.96264 -13.67917 -13.44892 -13.24885 -13.12244 -13.10252 -12.93736 -12.76040 -12.69998 -12.57169 -12.37950 -12.15005 -12.06998 -11.90507 -11.87261 -11.64632 -11.59182 -11.51363 -11.40773 -11.09104 -10.91883 -10.58996 -10.28298 -9.75913 -8.66858 -7.73552 -5.20019 0.18951 0.68921 1.16393 1.48388 1.51846 1.57841 1.96646 2.23581 2.56902 3.06786 3.23949 3.39179 3.40706 3.52461 3.74133 3.77277 3.91645 3.97627 3.99358 4.18575 4.20752 4.21996 4.36730 4.44256 4.59441 4.64601 4.68752 4.74244 4.76825 4.79313 4.81435 4.92428 4.95396 4.96709 4.98458 5.06837 5.09703 5.18668 5.28390 5.32125 5.37115 5.43927 5.55319 5.60858 5.65352 5.70106 5.80420 6.32908 6.40231 6.92486 7.15775 7.23178 7.96665 8.43000 9.29789 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010996 B = 0.003837 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.744389 B = 7295.519024 C = 9449.704116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.130 3.870 3 C -0.157 4.157 4 N -0.587 5.587 5 C 0.110 3.890 6 C 0.158 3.842 7 N -0.609 5.609 8 C 0.188 3.812 9 C -0.257 4.257 10 H 0.075 0.925 11 C -0.059 4.059 12 N -0.943 5.943 13 Si 0.969 3.031 14 H -0.278 1.278 15 H -0.298 1.298 16 H -0.275 1.275 17 C 0.603 3.397 18 O -0.569 6.569 19 C -0.132 4.132 20 C 0.108 3.892 21 N -0.338 5.338 22 C 0.100 3.900 23 C -0.139 4.139 24 C -0.120 4.120 25 C -0.145 4.145 26 N -0.101 5.101 27 N -0.208 5.208 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.031 0.969 38 H 0.041 0.959 39 H -0.018 1.018 40 H 0.012 0.988 41 H 0.044 0.956 42 H 0.245 0.755 43 H 0.233 0.767 44 H 0.137 0.863 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 -21.283 -11.346 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.317 5.317 5 C -0.015 4.015 6 C 0.031 3.969 7 N -0.333 5.333 8 C 0.043 3.957 9 C -0.387 4.387 10 H 0.093 0.907 11 C -0.253 4.253 12 N -0.590 5.590 13 Si 0.797 3.203 14 H -0.204 1.204 15 H -0.224 1.224 16 H -0.200 1.200 17 C 0.390 3.610 18 O -0.449 6.449 19 C -0.272 4.272 20 C -0.050 4.050 21 N -0.122 5.122 22 C 0.000 4.000 23 C -0.178 4.178 24 C -0.158 4.158 25 C -0.184 4.184 26 N -0.080 5.080 27 N -0.081 5.081 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.001 0.999 40 H 0.031 0.969 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.249 0.751 44 H 0.154 0.846 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.122 0.878 48 H 0.114 0.886 49 H 0.103 0.897 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.215 -20.831 -10.326 23.355 hybrid contribution -0.253 0.761 0.075 0.805 sum 1.962 -20.070 -10.251 22.622 Atomic orbital electron populations 1.22087 0.93590 1.02202 1.03244 1.21251 0.95313 0.93228 0.87421 1.22185 1.00952 0.95165 1.03190 1.48013 1.53376 1.21927 1.08421 1.22264 0.99541 0.98080 0.81628 1.21050 0.95130 0.94572 0.86146 1.43993 1.69390 1.18925 1.00952 1.20462 0.95635 0.92065 0.87557 1.19573 1.23036 0.95495 1.00592 0.90689 1.25747 0.99829 1.01234 0.98459 1.70313 1.35866 1.42640 1.10217 0.85314 0.78862 0.79502 0.76612 1.20387 1.22429 1.20028 1.16973 0.77406 0.80453 0.86150 1.90708 1.62520 1.64584 1.27064 1.21610 1.13796 0.98212 0.93577 1.23562 0.94593 0.97022 0.89857 1.50946 1.38189 1.16920 1.06172 1.24016 0.95825 0.79064 1.01089 1.23551 1.03019 0.93837 0.97349 1.22719 0.97495 0.96091 0.99451 1.23455 0.98414 0.93181 1.03335 1.82068 1.16479 0.92442 1.16978 1.75053 1.10910 1.21039 1.01049 0.92841 0.89085 0.92779 0.88407 0.93397 0.88975 0.92954 0.91119 0.90312 0.95069 0.94072 0.99942 0.96918 0.93788 0.94625 0.75080 0.84554 0.88019 0.88242 0.87758 0.88597 0.89650 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 71.98 0.67 -2.94 16 2 C 0.13 3.59 3.21 44.99 0.14 3.74 16 3 C -0.16 -4.24 8.01 71.98 0.58 -3.66 16 4 N -0.59 -19.39 2.39 -801.57 -1.91 -21.30 16 5 C 0.11 4.21 4.46 86.38 0.38 4.59 16 6 C 0.16 7.07 5.13 86.38 0.44 7.52 16 7 N -0.61 -32.67 2.93 -726.93 -2.13 -34.80 16 8 C 0.19 10.36 8.97 127.77 1.15 11.50 16 9 C -0.26 -14.58 9.69 84.03 0.81 -13.76 16 10 H 0.08 4.03 7.86 -2.91 -0.02 4.01 16 11 C -0.06 -3.41 5.10 84.86 0.43 -2.98 16 12 N -0.94 -58.72 10.52 21.65 0.23 -58.49 16 13 Si 0.97 46.51 29.57 68.60 2.03 48.54 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 17 C 0.60 20.24 7.64 86.69 0.66 20.91 16 18 O -0.57 -19.66 16.22 -4.00 -0.06 -19.73 16 19 C -0.13 -4.25 6.49 40.82 0.26 -3.98 16 20 C 0.11 2.53 10.49 83.85 0.88 3.41 16 21 N -0.34 -7.98 3.83 -324.05 -1.24 -9.22 16 22 C 0.10 1.42 5.05 45.52 0.23 1.65 16 23 C -0.14 -1.03 7.47 31.18 0.23 -0.80 16 24 C -0.12 -0.62 8.09 31.18 0.25 -0.37 16 25 C -0.15 -1.57 7.88 31.12 0.25 -1.32 16 26 N -0.10 -3.42 13.51 37.02 0.50 -2.92 16 27 N -0.21 -7.68 5.34 -49.99 -0.27 -7.95 16 28 H 0.05 1.37 6.91 -2.39 -0.02 1.35 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 2.70 6.95 -2.39 -0.02 2.68 16 32 H 0.05 1.39 7.94 -2.39 -0.02 1.37 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.63 6.56 -2.39 -0.02 1.61 16 35 H 0.07 2.72 6.58 -2.39 -0.02 2.70 16 36 H 0.08 3.23 5.70 -2.39 -0.01 3.21 16 37 H 0.03 1.44 6.41 -2.38 -0.02 1.43 16 38 H 0.04 1.83 5.77 -2.39 -0.01 1.82 16 39 H -0.02 -1.08 7.54 -2.39 -0.02 -1.10 16 40 H 0.01 0.72 6.97 -2.39 -0.02 0.71 16 41 H 0.04 2.19 5.83 -2.38 -0.01 2.18 16 42 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.23 3.52 6.78 -2.91 -0.02 3.50 16 44 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.10 0.65 6.39 -2.39 -0.02 0.64 16 46 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.10 0.31 8.14 -2.39 -0.02 0.30 16 48 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 49 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -75.79 388.36 5.46 -70.33 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.94 Total: 12.04 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 7.38 Total: 23.49 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -4.82 Total: -134.68 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.06 Total: -19.73 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -75.79 5.46 -70.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278907242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.331 kcal (2) G-P(sol) polarization free energy of solvation -75.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds