Wall clock time and date at job start Tue Mar 31 2020 18:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46858 * 2 1 4 4 C 1.52993 * 109.47366 * 239.99544 * 2 1 3 5 5 N 1.46502 * 109.46974 * 119.99365 * 2 1 3 6 6 C 1.34584 * 125.74791 * 75.02237 * 5 2 1 7 7 N 1.30870 * 107.62933 * 179.73198 * 6 5 2 8 8 C 1.34551 * 107.26231 * 0.36045 * 7 6 5 9 9 C 1.47879 * 126.04467 * 179.89531 * 8 7 6 10 10 O 1.21554 * 120.00092 * 172.88976 * 9 8 7 11 11 N 1.34777 * 119.99922 * 352.88537 * 9 8 7 12 12 C 1.46930 * 120.63185 * 4.03042 * 11 9 8 13 13 C 1.53192 * 108.77514 * 233.58648 * 12 11 9 14 14 C 1.53038 * 109.31033 * 305.36167 * 13 12 11 15 15 C 1.53043 * 109.53821 * 61.36624 * 14 13 12 16 16 C 1.46924 * 120.63153 * 184.00056 * 11 9 8 17 17 H 1.08992 * 109.70788 * 246.27189 * 16 11 9 18 18 C 1.53000 * 109.58495 * 6.63418 * 16 11 9 19 19 N 1.46503 * 109.46846 * 287.44709 * 18 16 11 20 20 C 1.36932 * 120.00175 * 175.63738 * 19 18 16 21 21 H 1.08003 * 120.00270 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00126 * 179.72646 * 20 19 18 23 23 N 1.31616 * 119.99772 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99924 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46868 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47057 * 120.00027 * 24 22 20 27 27 H 1.48495 * 109.46880 * 240.00079 * 24 22 20 28 28 N 1.28848 * 125.74939 * 254.97786 * 5 2 1 29 29 H 1.09000 * 109.47663 * 300.00338 * 1 2 3 30 30 H 1.09000 * 109.47223 * 60.00604 * 1 2 3 31 31 H 1.09009 * 109.46960 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47192 * 179.97438 * 3 2 1 33 33 H 1.09009 * 109.47153 * 299.99354 * 3 2 1 34 34 H 1.08993 * 109.47604 * 59.99971 * 3 2 1 35 35 H 1.08999 * 109.47179 * 300.00155 * 4 2 1 36 36 H 1.09000 * 109.47071 * 59.99758 * 4 2 1 37 37 H 1.09002 * 109.47449 * 180.02562 * 4 2 1 38 38 H 1.08009 * 126.18627 * 359.96252 * 6 5 2 39 39 H 1.09000 * 109.59127 * 113.79340 * 12 11 9 40 40 H 1.09001 * 109.70289 * 353.43924 * 12 11 9 41 41 H 1.08997 * 109.49832 * 185.41203 * 13 12 11 42 42 H 1.09002 * 109.50147 * 65.31103 * 13 12 11 43 43 H 1.09002 * 109.46158 * 301.34670 * 14 13 12 44 44 H 1.08997 * 109.45248 * 181.37887 * 14 13 12 45 45 H 1.09005 * 109.49883 * 178.68483 * 15 14 13 46 46 H 1.08994 * 109.52592 * 58.60226 * 15 14 13 47 47 H 1.08999 * 109.47479 * 167.45595 * 18 16 11 48 48 H 1.08997 * 109.47581 * 47.44492 * 18 16 11 49 49 H 0.97004 * 120.00256 * 355.64544 * 19 18 16 50 50 H 0.97001 * 119.99761 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1963 6 6 2.0142 -2.0220 1.3923 7 7 2.5333 -2.2505 2.5717 8 6 2.8503 -1.0573 3.1065 9 6 3.4624 -0.8336 4.4340 10 8 3.8223 0.2815 4.7572 11 7 3.6211 -1.8662 5.2854 12 6 3.2726 -3.2339 4.8768 13 6 2.3076 -3.8260 5.9088 14 6 2.9331 -3.7265 7.3020 15 6 3.1717 -2.2558 7.6520 16 6 4.1465 -1.6459 6.6397 17 1 5.1214 -2.1232 6.7379 18 6 4.2821 -0.1441 6.8991 19 7 5.4111 0.3843 6.1294 20 6 5.6726 1.7284 6.1326 21 1 5.0469 2.3990 6.7029 22 6 6.7458 2.2285 5.4078 23 7 7.5116 1.4106 4.7172 24 14 7.1029 4.0621 5.4128 25 1 6.1027 4.7588 6.2608 26 1 8.4640 4.2997 5.9570 27 1 7.0263 4.5850 4.0251 28 7 2.5247 -0.1254 2.2376 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2076 -2.1391 37 1 3.1300 -0.7217 -1.2489 38 1 1.6519 -2.7674 0.6998 39 1 4.1756 -3.8425 4.8295 40 1 2.7935 -3.2141 3.8979 41 1 2.1164 -4.8721 5.6698 42 1 1.3697 -3.2709 5.8906 43 1 3.8829 -4.2610 7.3127 44 1 2.2589 -4.1693 8.0350 45 1 3.5956 -2.1843 8.6537 46 1 2.2260 -1.7151 7.6177 47 1 4.4551 0.0269 7.9616 48 1 3.3660 0.3616 6.5940 49 1 5.9733 -0.2179 5.6174 50 1 8.2617 1.7600 4.2110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280451725.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:28 Heat of formation + Delta-G solvation = 120.824386 kcal Electronic energy + Delta-G solvation = -31053.331067 eV Core-core repulsion = 27120.242517 eV Total energy + Delta-G solvation = -3933.088550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.32646 -39.74827 -37.48488 -36.62975 -34.33730 -32.94240 -31.99601 -31.73913 -30.58097 -29.61357 -27.90484 -27.71252 -26.13069 -24.54639 -23.94645 -22.81579 -22.43851 -21.19460 -20.28255 -20.05291 -18.91667 -17.19687 -16.70959 -16.40875 -16.09310 -15.55552 -14.98808 -14.64449 -14.48049 -14.38570 -14.26959 -13.91620 -13.67200 -13.37779 -13.27531 -13.00774 -12.85257 -12.81116 -12.62574 -12.42109 -12.25294 -12.14278 -11.96505 -11.78290 -11.60198 -11.52656 -11.24709 -10.86363 -10.72221 -10.65543 -10.61415 -10.56873 -10.25421 -10.17360 -9.74045 -9.39912 -9.29941 -9.27285 -8.54255 -8.44674 -7.83990 -6.37398 -5.42123 -2.61229 1.78687 2.22554 2.40617 3.44659 3.62541 3.67186 3.69918 4.05758 4.09554 4.26550 4.32411 4.42873 4.76351 4.86814 4.91670 5.01514 5.08924 5.14114 5.19273 5.20038 5.22476 5.33758 5.41608 5.43738 5.51642 5.55148 5.70204 5.76159 5.79742 5.84522 5.93464 6.02803 6.07630 6.13673 6.14925 6.22986 6.27933 6.32804 6.37378 6.53082 6.58685 6.66872 6.79970 7.00036 7.12877 7.46284 8.00310 8.04530 8.33097 8.75431 9.07664 9.87044 10.46416 10.81213 11.82423 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008046 B = 0.005216 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.261251 B = 5367.237744 C = 8260.370473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.168 3.832 3 C -0.150 4.150 4 C -0.159 4.159 5 N -0.296 5.296 6 C 0.177 3.823 7 N -0.488 5.488 8 C 0.163 3.837 9 C 0.563 3.437 10 O -0.415 6.415 11 N -0.596 5.596 12 C 0.065 3.935 13 C -0.129 4.129 14 C -0.119 4.119 15 C -0.126 4.126 16 C 0.144 3.856 17 H 0.070 0.930 18 C 0.159 3.841 19 N -0.695 5.695 20 C -0.194 4.194 21 H 0.064 0.936 22 C -0.024 4.024 23 N -0.941 5.941 24 Si 0.899 3.101 25 H -0.283 1.283 26 H -0.297 1.297 27 H -0.297 1.297 28 N -0.248 5.248 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.215 0.785 39 H 0.052 0.948 40 H 0.151 0.849 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.014 0.986 48 H 0.041 0.959 49 H 0.379 0.621 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.532 -12.571 -10.266 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.086 3.914 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.092 5.092 6 C -0.117 4.117 7 N -0.215 5.215 8 C -0.117 4.117 9 C 0.344 3.656 10 O -0.278 6.278 11 N -0.334 5.334 12 C -0.058 4.058 13 C -0.167 4.167 14 C -0.157 4.157 15 C -0.165 4.165 16 C 0.041 3.959 17 H 0.088 0.912 18 C 0.031 3.969 19 N -0.337 5.337 20 C -0.327 4.327 21 H 0.082 0.918 22 C -0.218 4.218 23 N -0.592 5.592 24 Si 0.732 3.268 25 H -0.209 1.209 26 H -0.225 1.225 27 H -0.225 1.225 28 N -0.085 5.085 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.232 0.768 39 H 0.070 0.930 40 H 0.167 0.833 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.031 0.969 48 H 0.058 0.942 49 H 0.213 0.787 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.184 -11.286 -9.769 22.762 hybrid contribution 0.325 0.411 -0.660 0.843 sum -16.859 -10.876 -10.429 22.611 Atomic orbital electron populations 1.22249 0.92047 1.03322 1.03994 1.21083 0.95010 0.94481 0.80825 1.21996 1.03010 0.92139 1.03590 1.22251 1.02894 1.00880 0.95730 1.47700 1.41889 1.05992 1.13657 1.26367 1.02008 0.86638 0.96671 1.70745 1.18131 1.25728 1.06852 1.24404 1.04293 0.84730 0.98314 1.16627 0.81692 0.86199 0.81125 1.91369 1.41471 1.22305 1.72687 1.47466 1.65966 1.06759 1.13177 1.22828 0.98566 0.81876 1.02509 1.21865 0.99136 1.00376 0.95328 1.21530 1.00716 0.96570 0.96846 1.21901 1.00081 0.95696 0.98788 1.21482 0.95719 0.98409 0.80268 0.91242 1.20900 0.93635 0.88732 0.93639 1.42240 1.30170 1.05518 1.55794 1.19154 1.07338 0.84320 1.21840 0.91752 1.24573 0.99208 0.96888 1.01134 1.69672 1.20136 1.32628 1.36787 0.86178 0.77255 0.86434 0.76884 1.20878 1.22479 1.22456 1.74403 1.13629 1.25291 0.95179 0.91262 0.89814 0.91541 0.90996 0.90596 0.90416 0.91319 0.89540 0.91044 0.76819 0.92952 0.83334 0.91636 0.92224 0.92013 0.92409 0.90956 0.91717 0.96874 0.94178 0.78743 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 8.72 37.16 0.32 -0.73 16 2 C 0.17 1.52 1.23 -131.82 -0.16 1.36 16 3 C -0.15 -1.58 8.04 37.16 0.30 -1.28 16 4 C -0.16 -0.99 8.28 37.15 0.31 -0.68 16 5 N -0.30 -3.88 3.17 -49.84 -0.16 -4.04 16 6 C 0.18 2.07 11.71 -90.48 -1.06 1.01 16 7 N -0.49 -7.47 7.71 -12.36 -0.10 -7.57 16 8 C 0.16 3.14 7.72 -156.35 -1.21 1.93 16 9 C 0.56 12.39 7.44 -12.31 -0.09 12.30 16 10 O -0.42 -11.04 10.48 5.32 0.06 -10.98 16 11 N -0.60 -11.14 2.97 -166.31 -0.49 -11.64 16 12 C 0.07 0.98 6.31 -3.71 -0.02 0.96 16 13 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 14 C -0.12 -1.44 5.88 -26.69 -0.16 -1.60 16 15 C -0.13 -1.81 5.34 -26.61 -0.14 -1.96 16 16 C 0.14 2.68 2.91 -67.60 -0.20 2.49 16 17 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 18 C 0.16 3.63 4.89 -4.04 -0.02 3.61 16 19 N -0.69 -19.53 3.26 -59.91 -0.20 -19.72 16 20 C -0.19 -6.00 9.19 -15.06 -0.14 -6.14 16 21 H 0.06 1.97 7.83 -52.48 -0.41 1.56 16 22 C -0.02 -0.76 5.50 -17.43 -0.10 -0.86 16 23 N -0.94 -31.10 13.06 55.49 0.72 -30.38 16 24 Si 0.90 24.67 29.55 -169.99 -5.02 19.65 16 25 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 27 H -0.30 -8.21 7.11 56.52 0.40 -7.81 16 28 N -0.25 -4.59 11.10 32.08 0.36 -4.23 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.08 0.98 8.02 -51.93 -0.42 0.57 16 35 H 0.07 0.30 7.34 -51.93 -0.38 -0.08 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.22 1.35 7.53 -52.48 -0.40 0.95 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.15 2.25 3.66 -80.20 -0.29 1.95 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.01 0.31 8.10 -51.93 -0.42 -0.12 16 48 H 0.04 1.00 6.38 -51.93 -0.33 0.66 16 49 H 0.38 11.41 7.60 -40.82 -0.31 11.10 16 50 H 0.25 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -38.74 388.76 -9.93 -48.67 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.44 Total: 5.72 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -2.52 Total: 8.68 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: 0.14 Total: -77.58 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.06 Total: -10.98 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.02 Total: 19.65 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.74 -9.93 -48.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280451725.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.492 kcal (2) G-P(sol) polarization free energy of solvation -38.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds